Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006553

Physical Location & Seq

Genomic Coordinates Reverse (-)

14584849 .. 14588781

Gene Structure 3933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1154300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAATCGTGGATCTACGGTTTTGAAATGTGAATATGCTGTCCGAGGTGAAATTGTCGCCCTTGCCCAGAGGTTACAAGAAGAATTAAAGGCGAATCCCAGCTCTCATCCCTTTGATGAGATTCTTTACTGCAATATCGGAAATCCTCAGTCTCTTGGTCAGCAACAGATAACATTTTTCCGAGAGGTACTTGCATTGTGTGACCATCCAGCCATCTTGGACAAAAGCGAAACACAGGGTTTGTTCAGTGCCGATGCAATAGAGCGGGCATGGCAGATTCTGGATCAAATTCCTGGAAGAGCAACTGGTGCTTACAGTCACAGTCAGGGTATCAAGGGTTTGCGTGATACAATTGCTGCTGGAATTGAAGCTCGTGATGGATATCCTGCTGATCCAAATGATATTTTCTTAACCGATGGTGCAAGCCCTGCGGTCCATATGATGATGCAATTGCTGATAAGTTCAGAGAAGGATGGGATTCTTTGTCCCATTCCTCAATACCCTTTGTACTCTGCTTCAATTGCCCTCCACGGTGGCACACTGGTACCCTACTTTCTTGATGAGGCATCGGGGTGGGGATTGGAAACTTCTGAGTTGAAGAAGCAATTGGAGGATGCAAAGTCCAAGGGTATCAATGTAAGGGCCTTGGTTGTGATAAATCCAGGCAACCCAACAGGACAGGTTCTTGCCGAGGACAACCAGCGGCAGATTGTGGACTTCTGCAAGCAAGAAGGTCTTGTTTTGCTGGCAGATGAGGTTTATCAACAAAATGTTTATGTACCTGATAAGGAGTTTCATTCATTCAAGAAGGTATCCCGATCTATGGGATATGGCGAGCAGGATATTTCTCTGGTATCATTTCAATCAGTCTCTAAAGGGTACTACGGGGAGTGTGGAAAAAGAGGTGGTTACATGGAAGTCACTGGAATCAGTCCTGAAGTAAGGGAACAAATATACAAAATGGCATCCGTAAATCTTTGTTCTAATATCTCTGGTCAAATTCTTGCAAGCCTTGTCATGAGTCCACCAAAGAAGGATGGAATTCTGTCATCCCTAGCAAAGCGTGCGAAGGTTAGTAGCATTAGAAGAAGCACATGCAACAGAGCAGAAGGAGCAATGTATCTCTTTCCCTGCATAACCCTGCCTCAAAATGCAATTAAAGCAGCGGAGGCTGCAACGACAGCCCCCGATGCATTCTATTGTCACCGCCTTCTCAATGCCACAGGCATTGTGGTCGTTCCTGGTTCTGGTTTTGGGCAGGTTCCGGGCACCTGGCATTTCAGATGCACTATATTGCCTCAAGAGGATAAAATTCCAGCCATTGTCACCCGTCTGACAGACTTCCACAAGTCGTTCATGGACGAGTTCCACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006522 GO:0006524 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009078 GO:0009080 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0016740 GO:0016769 GO:0017076 GO:0019481 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036293 GO:0042221 GO:0042851 GO:0042853 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046686 GO:0047635 GO:0050896 GO:0070482 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00710 ko01100 ko01120 ko01200 ko01210 ko01230 map00220 map00250 map00710 map01100 map01120 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

459

Amino Acids

50.16

Weight (kDa)

5.76

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	97 - 436	1.3e-34	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17290 AT1G72330 AT1G72330 AT1G72330
fragaria_vesca	FvH4_6g35810 FvH4_6g35810
malus_domestica	MD09G1173000.v1.1 MD17G1154300.v1.1
prunus_persica	Prupe.3G031100_v2.0.a1 Prupe.3G031100_v2.0.a1
pyrus_communis	pycom09g09040 pycom17g14700
rosa_chinensis	RchiOBHm_Chr2g0147841
rosa_laevigata	RLG00000020283
rosa_multiflora	Rmu_co8135398.1_g000001 Rmu_co8265871.1_g000001 Rmu_co8360303.1_g000001 Rmu_sc0000308.1_g000051 Rmu_sc0042380.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099280
rosa_rugosa	Rorug02G0402300
rosa_samantha	Rh2AG459300 Rh2BG472600 Rh2CG446700 Rh2DG481600
rosa_wichuraiana	Rw2G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1249
Acc65I	GGTACC	1 cut(s)	544
AccB1I	GGYRCC	2 cut(s)	544, 1268
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	5 cut(s)	265, 431, 703, 1166, 1207
AclWI	GGATC	3 cut(s)	19, 291, 386
AcsI	RAATTY	4 cut(s)	288, 999, 1041, 1311
AcuI	CTGAAG	1 cut(s)	957
AfaI	GTAC	5 cut(s)	189, 509, 546, 780, 881
AfiI	CCNNNNNNNGG	2 cut(s)	823, 1247
AgsI	TTSAA	6 cut(s)	25, 368, 519, 598, 805, 863
AjnI	CCWGG	4 cut(s)	292, 661, 1240, 1271
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	2 cut(s)	102, 371
AluI	AGCT	2 cut(s)	102, 371
Alw26I	GTCTC	2 cut(s)	156, 874
AlwI	GGATC	3 cut(s)	19, 291, 386
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	3 cut(s)	356, 1163, 1172
ApoI	RAATTY	4 cut(s)	288, 999, 1041, 1311
Asp718I	GGTACC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	433, 642
AsuC2I	CCSGG	1 cut(s)	1266
AsuHPI	GGTGA	3 cut(s)	59, 1196, 1318
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	1271
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BanI	GGYRCC	2 cut(s)	544, 1268
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	343, 1159, 1175
BccI	CCATC	6 cut(s)	213, 221, 371, 410, 467, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	1216, 1250
BciT130I	CCWGG	4 cut(s)	294, 663, 1242, 1273
BciVI	GTATCC	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	1266
BcoDI	GTCTC	2 cut(s)	156, 874
BfaI	CTAG	2 cut(s)	1055, 1375
BfuAI	ACCTGC	1 cut(s)	1249
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	4 cut(s)	357, 704, 1164, 1173
BlsI	GCNGC	4 cut(s)	358, 705, 1165, 1174
Bme1390I	CCNGG	5 cut(s)	294, 663, 1242, 1266, 1273
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	433, 642
BmiI	GGNNCC	3 cut(s)	546, 1263, 1270
BmrFI	CCNGG	5 cut(s)	294, 663, 1242, 1266, 1273
BmsI	GCATC	7 cut(s)	244, 435, 575, 604, 974, 1180, 1274
BpuEI	CTTGAG	1 cut(s)	1284
BpuMI	CCSGG	1 cut(s)	1266
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	5 cut(s)	43, 529, 624, 645, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	823, 1247
Bse1I	ACTGG	3 cut(s)	310, 546, 928
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	4 cut(s)	294, 663, 1242, 1273
BseDI	CCNNGG	5 cut(s)	43, 529, 624, 645, 690
BseGI	GGATG	7 cut(s)	106, 205, 478, 619, 965, 1042, 1049
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	823, 1247
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	2 cut(s)	161, 582
BseNI	ACTGG	3 cut(s)	310, 546, 928
BseSI	GKGCMC	1 cut(s)	1271
BseXI	GCAGC	3 cut(s)	343, 1159, 1175
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	644
BshNI	GGYRCC	2 cut(s)	544, 1268
BsiSI	CCGG	1 cut(s)	1265
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	2 cut(s)	823, 1247
BsmAI	GTCTC	2 cut(s)	156, 874
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	1193
BsnI	GGCC	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	1271
Bsp143I	GATC	4 cut(s)	11, 283, 391, 818
BspACI	CCGC	5 cut(s)	265, 431, 703, 1166, 1207
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	2 cut(s)	160, 583
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	3 cut(s)	546, 1263, 1270
BspMI	ACCTGC	1 cut(s)	1249
BspPI	GGATC	3 cut(s)	19, 291, 386
BspQI	GCTCTTC	1 cut(s)	292
BspT107I	GGYRCC	2 cut(s)	544, 1268
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	1122
BsrI	ACTGG	3 cut(s)	310, 546, 928
BssECI	CCNNGG	5 cut(s)	43, 529, 624, 645, 690
BssMI	GATC	4 cut(s)	11, 283, 391, 818
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	624, 645
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	294, 663, 1242, 1273
Bst4CI	ACNGT	4 cut(s)	19, 317, 323, 533
Bst6I	CTCTTC	1 cut(s)	292
BstAPI	GCANNNNNTGC	3 cut(s)	308, 428, 1064
BstC8I	GCNNGC	7 cut(s)	267, 424, 725, 747, 836, 1009, 1065
BstDEI	CTNAG	2 cut(s)	147, 591
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	7 cut(s)	106, 205, 478, 619, 965, 1042, 1049
BstKTI	GATC	4 cut(s)	14, 286, 394, 821
BstMAI	GTCTC	2 cut(s)	156, 874
BstMBI	GATC	4 cut(s)	11, 283, 391, 818
BstNI	CCWGG	4 cut(s)	294, 663, 1242, 1273
BstNSI	RCATGY	1 cut(s)	1098
BstSCI	CCNGG	5 cut(s)	292, 661, 1240, 1264, 1271
BstSLI	GKGCMC	1 cut(s)	1271
BstV1I	GCAGC	3 cut(s)	343, 1159, 1175
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	7 cut(s)	106, 205, 478, 619, 965, 1042, 1049
BtsIMutI	CAGTG	3 cut(s)	253, 539, 921
BveI	ACCTGC	1 cut(s)	1249
Cac8I	GCNNGC	7 cut(s)	267, 424, 725, 747, 836, 1009, 1065
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	1017
Cfr13I	GGNCC	2 cut(s)	433, 642
Csp6I	GTAC	5 cut(s)	188, 508, 545, 779, 880
CspCI	CAANNNNNGTGG	2 cut(s)	1210, 1245
CviAII	CATG	5 cut(s)	270, 913, 1018, 1095, 1357
CviJI	RGCY	9 cut(s)	102, 212, 371, 426, 644, 1011, 1172, 1184, 1319
CviKI_1	RGCY	9 cut(s)	102, 212, 371, 426, 644, 1011, 1172, 1184, 1319
CviQI	GTAC	5 cut(s)	188, 508, 545, 779, 880
DdeI	CTNAG	2 cut(s)	147, 591
DpnI	GATC	4 cut(s)	13, 285, 393, 820
DpnII	GATC	4 cut(s)	11, 283, 391, 818
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	624, 645
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRI	GAATTC	1 cut(s)	1041
EcoRII	CCWGG	4 cut(s)	292, 661, 1240, 1271
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	624, 645
EcoT22I	ATGCAT	1 cut(s)	1195
ErhI	CCWWGG	2 cut(s)	624, 645
FaeI	CATG	5 cut(s)	273, 916, 1021, 1098, 1360
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	5 cut(s)	269, 912, 1017, 1094, 1356
FauI	CCCGC	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	357, 704, 1164, 1173
FokI	GGATG	7 cut(s)	93, 192, 485, 626, 952, 1036, 1049
Fsp4HI	GCNGC	4 cut(s)	357, 704, 1164, 1173
FspBI	CTAG	2 cut(s)	1055, 1375
GluI	GCNGC	4 cut(s)	357, 704, 1164, 1173
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	644
HapII	CCGG	1 cut(s)	1265
Hin1II	CATG	5 cut(s)	273, 916, 1021, 1098, 1360
HinfI	GANTC	7 cut(s)	4, 94, 121, 277, 478, 927, 1021
HpaII	CCGG	1 cut(s)	1265
HphI	GGTGA	3 cut(s)	59, 1196, 1318
Hpy166II	GTNNAC	2 cut(s)	715, 1025
Hpy188I	TCNGA	7 cut(s)	44, 140, 182, 466, 592, 1283, 1335
Hpy188III	TCNNGA	8 cut(s)	281, 374, 557, 805, 816, 935, 1018, 1301
Hpy8I	GTNNAC	2 cut(s)	715, 1025
HpyAV	CCTTC	7 cut(s)	463, 725, 802, 1027, 1063, 1103, 1220
HpyCH4III	ACNGT	4 cut(s)	19, 317, 323, 533
HpyF3I	CTNAG	2 cut(s)	147, 591
Hsp92II	CATG	5 cut(s)	273, 916, 1021, 1098, 1360
KpnI	GGTACC	1 cut(s)	548
Kzo9I	GATC	4 cut(s)	11, 283, 391, 818
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	1112
Lsp1109I	GCAGC	3 cut(s)	343, 1159, 1175
LweI	GCATC	7 cut(s)	244, 435, 575, 604, 974, 1180, 1274
MaeI	CTAG	2 cut(s)	1055, 1375
MaeIII	GTNAC	7 cut(s)	72, 200, 317, 908, 919, 1202, 1324
MalI	GATC	4 cut(s)	13, 285, 393, 820
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	4 cut(s)	11, 283, 391, 818
MboII	GAAGA	4 cut(s)	92, 309, 610, 1098
MfeI	CAATTG	4 cut(s)	351, 449, 519, 605
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	1271
MlyI	GAGTC	1 cut(s)	1030
Mph1103I	ATGCAT	1 cut(s)	1195
MseI	TTAA	3 cut(s)	86, 410, 1158
MslI	CAYNNNNRTG	1 cut(s)	571
MspA1I	CMGCKG	2 cut(s)	703, 1166
MspI	CCGG	1 cut(s)	1265
MspR9I	CCNGG	5 cut(s)	294, 663, 1242, 1266, 1273
MunI	CAATTG	4 cut(s)	351, 449, 519, 605
Mva1269I	GAATGC	1 cut(s)	1193
MvaI	CCWGG	4 cut(s)	294, 663, 1242, 1273
NciI	CCSGG	1 cut(s)	1266
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	4 cut(s)	11, 283, 391, 818
NlaIII	CATG	5 cut(s)	273, 916, 1021, 1098, 1360
NlaIV	GGNNCC	3 cut(s)	546, 1263, 1270
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	5 cut(s)	200, 317, 919, 1202, 1324
NsiI	ATGCAT	1 cut(s)	1195
NspI	RCATGY	1 cut(s)	1098
PagI	TCATGA	1 cut(s)	1017
PciSI	GCTCTTC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	1368
PctI	GAATGC	1 cut(s)	1193
PfeI	GAWTC	6 cut(s)	4, 94, 121, 277, 478, 927
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	358, 705, 1165, 1174
PleI	GAGTC	1 cut(s)	1029
PpsI	GAGTC	1 cut(s)	1029
Psp6I	CCWGG	4 cut(s)	292, 661, 1240, 1271
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	4 cut(s)	292, 661, 1240, 1271
PspN4I	GGNNCC	3 cut(s)	546, 1263, 1270
PspPI	GGNCC	2 cut(s)	433, 642
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	5 cut(s)	189, 509, 546, 780, 881
RsaNI	GTAC	5 cut(s)	188, 508, 545, 779, 880
RseI	CAYNNNNRTG	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	86, 410, 1158
SatI	GCNGC	4 cut(s)	357, 704, 1164, 1173
Sau3AI	GATC	4 cut(s)	11, 283, 391, 818
Sau96I	GGNCC	2 cut(s)	433, 642
SchI	GAGTC	1 cut(s)	1030
ScrFI	CCNGG	5 cut(s)	294, 663, 1242, 1266, 1273
SduI	GDGCHC	1 cut(s)	1271
SfaNI	GCATC	7 cut(s)	244, 435, 575, 604, 974, 1180, 1274
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	1299
SmoI	CTYRAG	1 cut(s)	1299
SsiI	CCGC	5 cut(s)	265, 431, 703, 1166, 1207
SspMI	CTAG	2 cut(s)	1055, 1375
StyD4I	CCNGG	5 cut(s)	292, 661, 1240, 1264, 1271
StyI	CCWWGG	2 cut(s)	624, 645
TaaI	ACNGT	4 cut(s)	19, 317, 323, 533
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	6 cut(s)	4, 94, 121, 277, 478, 927
Tru1I	TTAA	3 cut(s)	86, 410, 1158
Tru9I	TTAA	3 cut(s)	86, 410, 1158
TscAI	CASTG	3 cut(s)	253, 546, 928
TseFI	GTSAC	5 cut(s)	200, 317, 919, 1202, 1324
TseI	GCWGC	3 cut(s)	356, 1163, 1172
Tsp45I	GTSAC	5 cut(s)	200, 317, 919, 1202, 1324
TspDTI	ATGAA	4 cut(s)	17, 785, 789, 1345
TspGWI	ACGGA	1 cut(s)	958
TspRI	CASTG	3 cut(s)	253, 546, 928
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	4 cut(s)	288, 999, 1041, 1311
XceI	RCATGY	1 cut(s)	1098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1228
XspI	CTAG	2 cut(s)	1055, 1375
Zsp2I	ATGCAT	1 cut(s)	1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.