Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006553

Physical Location & Seq

Genomic Coordinates Reverse (-)

67526270 .. 67531914

Gene Structure 5645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG459300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGCGGAGATTCGTAAGCGGCAGACTCAGAAGCCTCGTCGTCCATTCTTTACAGACCAAACAGCAGATTCGCCCCCAGCAGCAGACACCTCTATTTCTCAGTCGTTTCTTGTCCGCTGCTCCAGCTCTCGACTTCCCATCTTCCATGGCTGACAAATCTCCTTCTCCTCTCACTGTCACTGTTGGGAATATCAATCCCAAGGTTGTGAAGTGTGAATATGCTGTCCGAGGTGAAATTGTCATTCTTGCTGGGAAAATTCAAGAAGAGTTGAAGGCTAATCCAGACTCTCATCCTTTTGATGAGATACTTTACTGCAATATCGGAAATCCTCAGTCTCTTGGCCAGCAACCAATCACTTATTTCCGAGAGGTTCTTGCGTTGTGTGACCATCCATCCATCTTGGACAAGAGTGAAACACAAGGCTTGTTCAGCGCCGATTCAATTGAGCGGGCATGGGAGGTTCTAGATCAAATTCCTGGAAGAGCAACTGGTGCTTACAGTCACAGTCAGGGTATCAAGGGGTTACGTGACACAATTGCTGCTGGAATTGAAGCTCGTGATGGATATCCTGCTGATCCAAATGATCTTTTCTTAACAGATGGTGCAAGCCCTGCGGTCCATATGATGTTGACATTGCTGTTAAGATCAGAAAAGGATGGGATTCTTTGTCCTATTCCTCAATACCCTTTGTATTCCGCTTCAATTGCCCTCCATGGTGGCACACTGGTTCCTTACTATCTTGATGAGGCATCAGGGTGGGGATTGGAAATTTCTGACTTGAAGAAGCAACTAGAGGATGCAAAGTCTAAAGGTGTCAATATAAGAGCCTTGGTTGTTATTAATCCAGGCAACCCAACCGGGCAGGTTCTTGCTGAGGACAACCAACGGCAGATTGTGGAGTTCTGCAAGCAAGAAGGTCTTGTTTTACTGGCAGATGAGGTATATCAAGAGAACATATATGTTCCTGATAAGGAGTTTCATTCATTCAAGAAGGTAGCAAGGTCTATGGGATACGGTGAGACGGATATTCCACTGGTATCTTTTCAATCAGTCTCTAAAGGGTACTACGGGGAGTGTGGAAAAAGAGGTGGATACATGGAAGTCACTGGATTTAGTCCTGAAGTGAGGGAACAAATATACAAAATGGCATCGGTCAATCTTTGTTCTAATATCAGTGGTCAAATTCTTGCAAGCCTAGTCATGAGTCCACCAAAGGTCTTTTTTCTCTCTTTAAGGAAATTTTGTATATCACTCTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006522 GO:0006524 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009078 GO:0009080 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0016740 GO:0016769 GO:0017076 GO:0019481 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036293 GO:0042221 GO:0042851 GO:0042853 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046686 GO:0047635 GO:0050896 GO:0070482 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00710 ko01100 ko01120 ko01200 ko01210 ko01230 map00220 map00250 map00710 map01100 map01120 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

420

Amino Acids

46.31

Weight (kDa)

6.04

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	151 - 406	8.5e-31	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17290 AT1G72330 AT1G72330 AT1G72330
fragaria_vesca	FvH4_6g35810 FvH4_6g35810
malus_domestica	MD09G1173000.v1.1 MD17G1154300.v1.1
prunus_persica	Prupe.3G031100_v2.0.a1 Prupe.3G031100_v2.0.a1
pyrus_communis	pycom09g09040 pycom17g14700
rosa_chinensis	RchiOBHm_Chr2g0147841
rosa_laevigata	RLG00000020283
rosa_multiflora	Rmu_co8135398.1_g000001 Rmu_co8265871.1_g000001 Rmu_co8360303.1_g000001 Rmu_sc0000308.1_g000051 Rmu_sc0042380.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099280
rosa_rugosa	Rorug02G0402300
rosa_samantha	Rh2AG459300 Rh2BG472600 Rh2CG446700 Rh2DG481600
rosa_wichuraiana	Rw2G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	853
AccBSI	CCGCTC	1 cut(s)	448
AciI	CCGC	6 cut(s)	4, 18, 114, 448, 614, 696
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	5 cut(s)	255, 471, 768, 1182, 1238
AcuI	CTGAAG	1 cut(s)	1140
AfaI	GTAC	1 cut(s)	1064
AgsI	TTSAA	8 cut(s)	260, 271, 441, 551, 702, 781, 988, 1046
AjnI	CCWGG	2 cut(s)	475, 844
AluBI	AGCT	2 cut(s)	125, 554
AluI	AGCT	2 cut(s)	125, 554
Alw26I	GTCTC	3 cut(s)	339, 1013, 1057
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	79, 116, 539
ApoI	RAATTY	5 cut(s)	255, 471, 768, 1182, 1238
AseI	ATTAAT	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	616
AsuC2I	CCSGG	1 cut(s)	859
AsuHPI	GGTGA	2 cut(s)	242, 1028
AvaII	GGWCC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	342
BauI	CACGAG	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	3 cut(s)	91, 103, 526
BccI	CCATC	7 cut(s)	145, 396, 400, 404, 554, 593, 650
BceAI	ACGGC	1 cut(s)	902
BciT130I	CCWGG	2 cut(s)	477, 846
BciVI	GTATCC	2 cut(s)	1004, 1085
BcnI	CCSGG	1 cut(s)	859
BcoDI	GTCTC	3 cut(s)	339, 1013, 1057
BfaI	CTAG	3 cut(s)	464, 791, 1196
BfoI	RGCGCY	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	853
BfuI	GTATCC	2 cut(s)	1004, 1085
BisI	GCNGC	4 cut(s)	19, 80, 117, 540
BlsI	GCNGC	4 cut(s)	20, 81, 118, 541
Bme1390I	CCNGG	3 cut(s)	477, 846, 859
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	3 cut(s)	477, 846, 859
BmsI	GCATC	3 cut(s)	758, 787, 1157
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	873
BpuMI	CCSGG	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	5 cut(s)	144, 198, 226, 712, 828
Bse1I	ACTGG	5 cut(s)	493, 729, 933, 1038, 1111
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	477, 846
BseDI	CCNNGG	5 cut(s)	144, 198, 226, 712, 828
BseGI	GGATG	5 cut(s)	289, 388, 392, 661, 802
BseJI	GATNNNNATC	1 cut(s)	564
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	4 cut(s)	40, 112, 344, 864
BseNI	ACTGG	5 cut(s)	493, 729, 933, 1038, 1111
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	91, 103, 526
BseYI	CCCAGC	2 cut(s)	75, 248
BshFI	GGCC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	858
BsmAI	GTCTC	3 cut(s)	339, 1013, 1057
BsmBI	CGTCTC	1 cut(s)	1013
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	466, 574, 583, 644
Bsp19I	CCATGG	2 cut(s)	144, 712
BspACI	CCGC	6 cut(s)	4, 18, 114, 448, 614, 696
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	4 cut(s)	39, 111, 343, 865
BspHI	TCATGA	1 cut(s)	1200
BspLI	GGNNCC	1 cut(s)	729
BspMI	ACCTGC	1 cut(s)	853
BspPI	GGATC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	5 cut(s)	493, 729, 933, 1038, 1111
BssECI	CCNNGG	5 cut(s)	144, 198, 226, 712, 828
BssMI	GATC	4 cut(s)	466, 574, 583, 644
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	4 cut(s)	144, 198, 712, 828
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	477, 846
Bst4CI	ACNGT	5 cut(s)	175, 181, 500, 506, 1016
Bst6I	CTCTTC	2 cut(s)	258, 475
BstAPI	GCANNNNNTGC	2 cut(s)	491, 611
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	5 cut(s)	344, 450, 607, 908, 1192
BstDEI	CTNAG	4 cut(s)	26, 98, 330, 873
BstDSI	CCRYGG	2 cut(s)	144, 712
BstF5I	GGATG	5 cut(s)	289, 388, 392, 661, 802
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	4 cut(s)	469, 577, 586, 647
BstMAI	GTCTC	3 cut(s)	339, 1013, 1057
BstMBI	GATC	4 cut(s)	466, 574, 583, 644
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 429, 491, 611, 704
BstNI	CCWGG	2 cut(s)	477, 846
BstSCI	CCNGG	3 cut(s)	475, 844, 857
BstV1I	GCAGC	3 cut(s)	91, 103, 526
BsuI	GTATCC	2 cut(s)	1004, 1085
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	2 cut(s)	144, 712
BtsCI	GGATG	5 cut(s)	289, 388, 392, 661, 802
BtsIMutI	CAGTG	6 cut(s)	171, 177, 722, 1031, 1104, 1180
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	5 cut(s)	344, 450, 607, 908, 1192
CciI	TCATGA	1 cut(s)	1200
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	1063
CviAII	CATG	5 cut(s)	145, 453, 713, 1096, 1201
CviQI	GTAC	1 cut(s)	1063
DdeI	CTNAG	4 cut(s)	26, 98, 330, 873
DpnI	GATC	4 cut(s)	468, 576, 585, 646
DpnII	GATC	4 cut(s)	466, 574, 583, 644
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	258, 475
EarI	CTCTTC	2 cut(s)	258, 475
Eco130I	CCWWGG	4 cut(s)	144, 198, 712, 828
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	1140
EcoRII	CCWGG	2 cut(s)	475, 844
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	4 cut(s)	144, 198, 712, 828
ErhI	CCWWGG	4 cut(s)	144, 198, 712, 828
Esp3I	CGTCTC	1 cut(s)	1013
FaeI	CATG	5 cut(s)	148, 456, 716, 1099, 1204
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	5 cut(s)	144, 452, 712, 1095, 1200
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	19, 80, 117, 540
FokI	GGATG	5 cut(s)	276, 375, 379, 668, 809
Fsp4HI	GCNGC	4 cut(s)	19, 80, 117, 540
FspBI	CTAG	3 cut(s)	464, 791, 1196
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	4 cut(s)	19, 80, 117, 540
GsaI	CCCAGC	2 cut(s)	79, 252
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	858
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	5 cut(s)	148, 456, 716, 1099, 1204
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	7 cut(s)	9, 24, 67, 284, 437, 661, 1204
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	2 cut(s)	242, 1028
Hpy166II	GTNNAC	2 cut(s)	630, 1208
Hpy188I	TCNGA	6 cut(s)	29, 227, 323, 365, 649, 775
Hpy8I	GTNNAC	2 cut(s)	630, 1208
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	171, 265, 908, 985
HpyCH4III	ACNGT	5 cut(s)	175, 181, 500, 506, 1016
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	5 cut(s)	315, 605, 800, 906, 1190
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 429, 491, 611, 704
HpyF3I	CTNAG	4 cut(s)	26, 98, 330, 873
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	5 cut(s)	148, 456, 716, 1099, 1204
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	466, 574, 583, 644
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	3 cut(s)	91, 103, 526
LweI	GCATC	3 cut(s)	758, 787, 1157
MaeI	CTAG	3 cut(s)	464, 791, 1196
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	6 cut(s)	175, 383, 500, 522, 527, 1102
MalI	GATC	4 cut(s)	468, 576, 585, 646
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	4 cut(s)	466, 574, 583, 644
MboII	GAAGA	4 cut(s)	132, 275, 492, 793
MfeI	CAATTG	3 cut(s)	441, 534, 702
MlsI	TGGCCA	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	18, 278, 1213
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	5 cut(s)	593, 641, 840, 1232, 1257
MslI	CAYNNNNRTG	1 cut(s)	754
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	3 cut(s)	477, 846, 859
MunI	CAATTG	3 cut(s)	441, 534, 702
MvaI	CCWGG	2 cut(s)	477, 846
MwoI	GCNNNNNNNGC	5 cut(s)	122, 429, 491, 611, 704
NciI	CCSGG	1 cut(s)	859
NcoI	CCATGG	2 cut(s)	144, 712
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	4 cut(s)	466, 574, 583, 644
NlaIII	CATG	5 cut(s)	148, 456, 716, 1099, 1204
NlaIV	GGNNCC	1 cut(s)	729
NmuCI	GTSAC	5 cut(s)	175, 383, 500, 527, 1102
PagI	TCATGA	1 cut(s)	1200
PciSI	GCTCTTC	1 cut(s)	475
PfeI	GAWTC	4 cut(s)	9, 67, 437, 661
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	20, 81, 118, 541
PleI	GAGTC	3 cut(s)	18, 278, 1212
PpsI	GAGTC	3 cut(s)	18, 278, 1212
Ppu21I	YACGTR	1 cut(s)	527
PshBI	ATTAAT	1 cut(s)	840
Psp6I	CCWGG	2 cut(s)	475, 844
PspFI	CCCAGC	2 cut(s)	75, 248
PspGI	CCWGG	2 cut(s)	475, 844
PspN4I	GGNNCC	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	616
RsaI	GTAC	1 cut(s)	1064
RsaNI	GTAC	1 cut(s)	1063
RseI	CAYNNNNRTG	1 cut(s)	754
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	5 cut(s)	593, 641, 840, 1232, 1257
SatI	GCNGC	4 cut(s)	19, 80, 117, 540
Sau3AI	GATC	4 cut(s)	466, 574, 583, 644
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	3 cut(s)	18, 278, 1213
ScrFI	CCNGG	3 cut(s)	477, 846, 859
SfaNI	GCATC	3 cut(s)	758, 787, 1157
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	754
SsiI	CCGC	6 cut(s)	4, 18, 114, 448, 614, 696
SspMI	CTAG	3 cut(s)	464, 791, 1196
StyD4I	CCNGG	3 cut(s)	475, 844, 857
StyI	CCWWGG	4 cut(s)	144, 198, 712, 828
TaaI	ACNGT	5 cut(s)	175, 181, 500, 506, 1016
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	1141
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	9, 67, 437, 661
Tru1I	TTAA	5 cut(s)	593, 641, 840, 1232, 1257
Tru9I	TTAA	5 cut(s)	593, 641, 840, 1232, 1257
TscAI	CASTG	6 cut(s)	178, 184, 729, 1038, 1111, 1180
TseFI	GTSAC	5 cut(s)	175, 383, 500, 527, 1102
TseI	GCWGC	3 cut(s)	79, 116, 539
Tsp45I	GTSAC	5 cut(s)	175, 383, 500, 527, 1102
TspDTI	ATGAA	2 cut(s)	968, 972
TspGWI	ACGGA	1 cut(s)	1037
TspRI	CASTG	6 cut(s)	178, 184, 729, 1038, 1111, 1180
VpaK11BI	GGWCC	1 cut(s)	616
VspI	ATTAAT	1 cut(s)	840
XapI	RAATTY	5 cut(s)	255, 471, 768, 1182, 1238
XbaI	TCTAGA	1 cut(s)	463
XspI	CTAG	3 cut(s)	464, 791, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.