MD09G1173000.v1.1

Alanine aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
14649678 .. 14655055
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1173000.v1.1.491

Sequence Viewer

Length: 1662 bp
ATGCGGAAATTCGGAAGCGGCAGAGTCAGAGCTCTTCTCATCCGTTCCTTTCAGCAAAAGCAGATTCGTTCAACCTCCTCCTCCTCTCTGTTTGCTTCTTCTCACTCGCGTTTCCTGTCCGCCGCTCCAGCTGTAGATTTCCCTCCTTCCTCTCCTCCCATGGCTGATCACTCTGCTTCACGTCCCTCTCCTCCCGTCACTCTCCAGAACATCAATCCCAAGATTGCTGTGTATTTTCATATGTATTTTGGTGTTTTGAAATGTGAATATGCTGTCCGAGGTGAAATCGTCACCCTTGCACAGAGGTTACAAGAAGAGTTAAAGGCGAATCCGGGCTCTCATCCCTTTGATGAGATTCTCTACTGCAATATCGGAAATCCTCAGTCTCTTGGTCAACAACCGATAACATTTTTCCGAGAGATTCTTGCATTATGCGACCATCCAGCTATCTTGGACAAAAGCGAAACACAGGGTTTGTTCAGTGCCGATGCAATAGAGCGGGCATGGGAGATTCTGGATCAAATTCCTGGAAGAGCAACTGGTGCTTACAGTCACAGTCAGGGTATCAAGGGTTTACGTGATACAATTGCTGCTGGAATTGAAGCTCGTGATGGATATCCTGCTAATCCGAATGATATTTTCTTAACTGATGGTGCAAGCCCTGCGGTCCATATGATGATGCAATTACTGATAAGTTCAGAGAAGGATGGGATTCTTTGTCCCATTCCTCAATACCCTTTGTACTCTGCGTCAATAGCCCTCCACGGTGGCACACTGGTTCCTTATTTTCTTGATGAGGCATCAGGGTGGGGATTGGAAACTTCTGAGTTGAAGAAGCAATTGGAGGATGCGAAGTCCAAGGGTATCAATGTAAGGGCCTTGGTTGTGATAAATCCAGGCAACCCAACAGGACAGGTTCTTGCCGAGGACAACCAGCGGCAGATTGTGGACTTCTGCAAGCAAGAAGGTCTTGTTTTGCTGGCAGATGAGGTTTATCAAGAAAATGTTTATGTACCTGATAAGGAGTTTCATTCATTCAAGAAGGTATCCCGGTCTATGGGATATGGCGAGCAGGATATTTCTCTGGTATCATTTCAATCAGTCTCTAAAGGGTACTACGGGGAGTGTGGAAAAAGAGGTGGTTACATGGAAGTCACTGGAATCAGTCCTGAAGTAAGGGAACAAATATACAAAATGGCATCCGTAAATCTTTGTTCTAATATCTCGGGTCAGATTCTTGCAAGCCTTGTCATGAGTCCACCAAAGGTTGGAGATGAATCCTATGAAATGTATTTGGCAGAGAAGGATGGAATTCTGTCATCCCTAGCAAGGCGTGCAAAGGCATTAGAAGAAGCATTGAACAGCTTAGAGGGTGTGACATGCAACAGAGCAGAAGGAGCAATGTATCTCTTTCCCTGCATAAACCTGCCTCAAAAGGCAATTAAAGCAGCGGAGGCTGCAAAGACAGCCCCAGATGCATTCTACTGTCGCCGCCTTCTCAATGCCACAGGAGTTGTTGTCGTTCCTGGTTCTGGTTTTGGGCAGGTTCCGGGCACCTGGCATTTCAGATGCACTATATTGCCGCAAGAGGATAAAATTCCAGCCATTGTCACCCGTCTGACAGACTTCCACAAGTCGTTCATGGACGAGTTCCGCGACTAG

Protein Analysis

554

Amino Acids

60.67

Weight (kDa)

5.95

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 176 - 531 1.6e-39 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1434, 1534
AccB1I GGYRCC 1 cut(s) 1553
AccB7I CCANNNNNTGG 1 cut(s) 1268
AccBSI CCGCTC 2 cut(s) 125, 499
AccII CGCG 2 cut(s) 109, 1656
AclWI GGATC 1 cut(s) 525
AcsI RAATTY 4 cut(s) 8, 522, 1311, 1596
AcuI CTGAAG 1 cut(s) 1191
AfaI GTAC 3 cut(s) 743, 1014, 1115
AfiI CCNNNNNNNGG 4 cut(s) 1057, 1268, 1329, 1532
AgsI TTSAA 7 cut(s) 72, 259, 602, 832, 1039, 1097, 1360
AjiI CACGTC 1 cut(s) 182
AjnI CCWGG 4 cut(s) 526, 895, 1525, 1556
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 5 cut(s) 32, 131, 446, 605, 1365
AluI AGCT 5 cut(s) 32, 131, 446, 605, 1365
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 390, 1108
AlwI GGATC 1 cut(s) 525
Ama87I CYCGRG 1 cut(s) 1225
AoxI GGCC 1 cut(s) 876
ApeKI GCWGC 3 cut(s) 590, 1448, 1457
ApoI RAATTY 4 cut(s) 8, 522, 1311, 1596
AspS9I GGNCC 2 cut(s) 667, 876
AsuC2I CCSGG 3 cut(s) 333, 1051, 1551
AsuHPI GGTGA 3 cut(s) 283, 293, 1603
AvaI CYCGRG 1 cut(s) 1225
AvaII GGWCC 1 cut(s) 667
BaeGI GKGCMC 1 cut(s) 1556
BanI GGYRCC 1 cut(s) 1553
BanII GRGCYC 2 cut(s) 34, 338
BauI CACGAG 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 577, 1444, 1460
BccI CCATC 5 cut(s) 447, 605, 644, 701, 1301
BciT130I CCWGG 4 cut(s) 528, 897, 1527, 1558
BciVI GTATCC 1 cut(s) 1057
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 3 cut(s) 333, 1051, 1551
BcoDI GTCTC 2 cut(s) 390, 1108
BfaI CTAG 2 cut(s) 1325, 1660
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 2 cut(s) 1434, 1534
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 8 cut(s) 19, 123, 591, 938, 1449, 1458, 1492, 1583
BlsI GCNGC 8 cut(s) 20, 124, 592, 939, 1450, 1459, 1493, 1584
Bme1390I CCNGG 7 cut(s) 333, 528, 897, 1051, 1527, 1551, 1558
Bme18I GGWCC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 1225
BmgBI CACGTC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 667, 876
BmiI GGNNCC 3 cut(s) 780, 1548, 1555
BmrFI CCNGG 7 cut(s) 333, 528, 897, 1051, 1527, 1551, 1558
BmsI GCATC 7 cut(s) 478, 669, 809, 838, 1208, 1465, 1559
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 2 cut(s) 111, 188
BpuMI CCSGG 3 cut(s) 333, 1051, 1551
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 6 cut(s) 159, 277, 763, 858, 879, 924
BsaXI ACNNNNNCTCC 2 cut(s) 1503, 1533
Bsc4I CCNNNNNNNGG 4 cut(s) 1057, 1268, 1329, 1532
Bse1I ACTGG 3 cut(s) 544, 780, 1162
Bse3DI GCAATG 1 cut(s) 1407
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 4 cut(s) 528, 897, 1527, 1558
BseDI CCNNGG 6 cut(s) 159, 277, 763, 858, 879, 924
BseGI GGATG 8 cut(s) 39, 340, 439, 712, 853, 1199, 1312, 1319
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 4 cut(s) 1057, 1268, 1329, 1532
BseMI GCAATG 1 cut(s) 1407
BseMII CTCAG 2 cut(s) 395, 816
BseNI ACTGG 3 cut(s) 544, 780, 1162
BseRI GAGGAG 5 cut(s) 67, 70, 73, 144, 180
BseSI GKGCMC 1 cut(s) 1556
BseXI GCAGC 3 cut(s) 577, 1444, 1460
Bsh1236I CGCG 2 cut(s) 109, 1656
BshFI GGCC 1 cut(s) 878
BshNI GGYRCC 1 cut(s) 1553
BsiHKAI GWGCWC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 1225
BsiSI CCGG 3 cut(s) 332, 1051, 1550
BslFI GGGAC 2 cut(s) 168, 705
BslI CCNNNNNNNGG 4 cut(s) 1057, 1268, 1329, 1532
BsmAI GTCTC 2 cut(s) 390, 1108
BsmFI GGGAC 2 cut(s) 168, 705
BsmI GAATGC 1 cut(s) 1478
BsnI GGCC 1 cut(s) 878
BsoBI CYCGRG 1 cut(s) 1225
Bsp1286I GDGCHC 3 cut(s) 34, 338, 1556
Bsp143I GATC 2 cut(s) 166, 517
Bsp19I CCATGG 1 cut(s) 159
BspANI GGCC 1 cut(s) 878
BspCNI CTCAG 2 cut(s) 394, 817
BspFNI CGCG 2 cut(s) 109, 1656
BspHI TCATGA 1 cut(s) 1251
BspLI GGNNCC 3 cut(s) 780, 1548, 1555
BspMI ACCTGC 2 cut(s) 1434, 1534
BspPI GGATC 1 cut(s) 525
BspQI GCTCTTC 2 cut(s) 39, 526
BspT107I GGYRCC 1 cut(s) 1553
BsrBI CCGCTC 2 cut(s) 125, 499
BsrDI GCAATG 1 cut(s) 1407
BsrI ACTGG 3 cut(s) 544, 780, 1162
BssECI CCNNGG 6 cut(s) 159, 277, 763, 858, 879, 924
BssMI GATC 2 cut(s) 166, 517
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 3 cut(s) 159, 858, 879
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 4 cut(s) 528, 897, 1527, 1558
Bst4CI ACNGT 4 cut(s) 551, 557, 767, 1487
Bst6I CTCTTC 3 cut(s) 39, 309, 526
BstAPI GCANNNNNTGC 3 cut(s) 542, 662, 1334
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 7 cut(s) 501, 658, 959, 981, 1070, 1243, 1335
BstDEI CTNAG 3 cut(s) 381, 825, 1366
BstDSI CCRYGG 2 cut(s) 159, 763
BstF5I GGATG 8 cut(s) 39, 340, 439, 712, 853, 1199, 1312, 1319
BstFNI CGCG 2 cut(s) 109, 1656
BstKTI GATC 2 cut(s) 169, 520
BstMAI GTCTC 2 cut(s) 390, 1108
BstMBI GATC 2 cut(s) 166, 517
BstNI CCWGG 4 cut(s) 528, 897, 1527, 1558
BstNSI RCATGY 1 cut(s) 1383
BstSCI CCNGG 7 cut(s) 331, 526, 895, 1049, 1525, 1549, 1556
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 1556
BstUI CGCG 2 cut(s) 109, 1656
BstV1I GCAGC 3 cut(s) 577, 1444, 1460
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 1 cut(s) 878
BtgI CCRYGG 2 cut(s) 159, 763
BtrI CACGTC 1 cut(s) 182
BtsCI GGATG 8 cut(s) 39, 340, 439, 712, 853, 1199, 1312, 1319
BtsIMutI CAGTG 3 cut(s) 487, 773, 1155
BveI ACCTGC 2 cut(s) 1434, 1534
Cac8I GCNNGC 7 cut(s) 501, 658, 959, 981, 1070, 1243, 1335
CciI TCATGA 1 cut(s) 1251
Cfr13I GGNCC 2 cut(s) 667, 876
CseI GACGC 1 cut(s) 738
Csp6I GTAC 3 cut(s) 742, 1013, 1114
CspCI CAANNNNNGTGG 2 cut(s) 1495, 1530
CviAII CATG 6 cut(s) 160, 504, 1147, 1252, 1380, 1642
CviQI GTAC 3 cut(s) 742, 1013, 1114
DdeI CTNAG 3 cut(s) 381, 825, 1366
DpnI GATC 2 cut(s) 168, 519
DpnII GATC 2 cut(s) 166, 517
Eam1104I CTCTTC 3 cut(s) 39, 309, 526
EarI CTCTTC 3 cut(s) 39, 309, 526
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 3 cut(s) 159, 858, 879
Eco24I GRGCYC 2 cut(s) 34, 338
Eco32I GATATC 1 cut(s) 617
Eco47I GGWCC 1 cut(s) 667
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 1191
Eco88I CYCGRG 1 cut(s) 1225
EcoICRI GAGCTC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 1311
EcoRII CCWGG 4 cut(s) 526, 895, 1525, 1556
EcoRV GATATC 1 cut(s) 617
EcoT14I CCWWGG 3 cut(s) 159, 858, 879
EcoT22I ATGCAT 1 cut(s) 1480
EcoT38I GRGCYC 2 cut(s) 34, 338
ErhI CCWWGG 3 cut(s) 159, 858, 879
FaeI CATG 6 cut(s) 163, 507, 1150, 1255, 1383, 1645
FalI AAGNNNNNCTT 2 cut(s) 954, 986
FaqI GGGAC 2 cut(s) 168, 705
FatI CATG 6 cut(s) 159, 503, 1146, 1251, 1379, 1641
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 2 cut(s) 240, 672
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 8 cut(s) 19, 123, 591, 938, 1449, 1458, 1492, 1583
FokI GGATG 8 cut(s) 26, 327, 426, 719, 860, 1186, 1306, 1319
FriOI GRGCYC 2 cut(s) 34, 338
Fsp4HI GCNGC 8 cut(s) 19, 123, 591, 938, 1449, 1458, 1492, 1583
FspBI CTAG 2 cut(s) 1325, 1660
GluI GCNGC 8 cut(s) 19, 123, 591, 938, 1449, 1458, 1492, 1583
GsuI CTGGAG 2 cut(s) 111, 188
HaeIII GGCC 1 cut(s) 878
HapII CCGG 3 cut(s) 332, 1051, 1550
HgaI GACGC 1 cut(s) 738
Hin1II CATG 6 cut(s) 163, 507, 1150, 1255, 1383, 1645
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HpaII CCGG 3 cut(s) 332, 1051, 1550
HphI GGTGA 3 cut(s) 283, 293, 1603
Hpy166II GTNNAC 4 cut(s) 395, 575, 949, 1259
Hpy188III TCNNGA 8 cut(s) 205, 515, 608, 791, 998, 1039, 1169, 1252
Hpy8I GTNNAC 4 cut(s) 395, 575, 949, 1259
HpyAV CCTTC 7 cut(s) 156, 697, 959, 1036, 1297, 1388, 1505
HpyCH4III ACNGT 4 cut(s) 551, 557, 767, 1487
HpyCH4IV ACGT 2 cut(s) 181, 577
HpyF3I CTNAG 3 cut(s) 381, 825, 1366
HpySE526I ACGT 2 cut(s) 181, 577
Hsp92II CATG 6 cut(s) 163, 507, 1150, 1255, 1383, 1645
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 166, 517
LguI GCTCTTC 2 cut(s) 39, 526
LmnI GCTCC 2 cut(s) 130, 1397
Lsp1109I GCAGC 3 cut(s) 577, 1444, 1460
LweI GCATC 7 cut(s) 478, 669, 809, 838, 1208, 1465, 1559
MaeI CTAG 2 cut(s) 1325, 1660
MaeII ACGT 2 cut(s) 181, 577
MaeIII GTNAC 8 cut(s) 196, 289, 306, 551, 1142, 1153, 1375, 1609
MalI GATC 2 cut(s) 168, 519
MbiI CCGCTC 2 cut(s) 125, 499
MboI GATC 2 cut(s) 166, 517
MboII GAAGA 6 cut(s) 26, 90, 326, 543, 844, 1361
MfeI CAATTG 2 cut(s) 585, 839
MhlI GDGCHC 3 cut(s) 34, 338, 1556
MluCI AATT 9 cut(s) 8, 522, 585, 597, 683, 839, 1311, 1440, 1596
MlyI GAGTC 2 cut(s) 33, 1264
MmeI TCCRAC 1 cut(s) 1249
Mph1103I ATGCAT 1 cut(s) 1480
MseI TTAA 3 cut(s) 320, 644, 1443
MslI CAYNNNNRTG 1 cut(s) 805
MspA1I CMGCKG 3 cut(s) 131, 937, 1451
MspI CCGG 3 cut(s) 332, 1051, 1550
MspR9I CCNGG 7 cut(s) 333, 528, 897, 1051, 1527, 1551, 1558
MunI CAATTG 2 cut(s) 585, 839
Mva1269I GAATGC 1 cut(s) 1478
MvaI CCWGG 4 cut(s) 528, 897, 1527, 1558
MvnI CGCG 2 cut(s) 109, 1656
NciI CCSGG 3 cut(s) 333, 1051, 1551
NcoI CCATGG 1 cut(s) 159
NdeI CATATG 2 cut(s) 240, 672
NdeII GATC 2 cut(s) 166, 517
NlaIII CATG 6 cut(s) 163, 507, 1150, 1255, 1383, 1645
NlaIV GGNNCC 3 cut(s) 780, 1548, 1555
NmeAIII GCCGAG 1 cut(s) 949
NmuCI GTSAC 6 cut(s) 196, 289, 551, 1153, 1375, 1609
NsiI ATGCAT 1 cut(s) 1480
NspI RCATGY 1 cut(s) 1383
PagI TCATGA 1 cut(s) 1251
PciSI GCTCTTC 2 cut(s) 39, 526
PcsI WCGNNNNNNNCGW 1 cut(s) 1653
PctI GAATGC 1 cut(s) 1478
PfeI GAWTC 9 cut(s) 64, 328, 355, 421, 511, 712, 1161, 1234, 1277
PflMI CCANNNNNTGG 1 cut(s) 1268
PfoI TCCNGGA 1 cut(s) 526
PkrI GCNGC 8 cut(s) 20, 124, 592, 939, 1450, 1459, 1493, 1584
PleI GAGTC 2 cut(s) 32, 1263
PpsI GAGTC 2 cut(s) 32, 1263
Ppu21I YACGTR 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 4 cut(s) 526, 895, 1525, 1556
PspGI CCWGG 4 cut(s) 526, 895, 1525, 1556
PspN4I GGNNCC 3 cut(s) 780, 1548, 1555
PspPI GGNCC 2 cut(s) 667, 876
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 3 cut(s) 743, 1014, 1115
RsaNI GTAC 3 cut(s) 742, 1013, 1114
RseI CAYNNNNRTG 1 cut(s) 805
SacI GAGCTC 1 cut(s) 34
SapI GCTCTTC 2 cut(s) 39, 526
SaqAI TTAA 3 cut(s) 320, 644, 1443
SatI GCNGC 8 cut(s) 19, 123, 591, 938, 1449, 1458, 1492, 1583
Sau3AI GATC 2 cut(s) 166, 517
Sau96I GGNCC 2 cut(s) 667, 876
SchI GAGTC 2 cut(s) 33, 1264
ScrFI CCNGG 7 cut(s) 333, 528, 897, 1051, 1527, 1551, 1558
SduI GDGCHC 3 cut(s) 34, 338, 1556
SfaNI GCATC 7 cut(s) 478, 669, 809, 838, 1208, 1465, 1559
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 805
Sse9I AATT 9 cut(s) 8, 522, 585, 597, 683, 839, 1311, 1440, 1596
SspMI CTAG 2 cut(s) 1325, 1660
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 7 cut(s) 331, 526, 895, 1049, 1525, 1549, 1556
StyI CCWWGG 3 cut(s) 159, 858, 879
TaaI ACNGT 4 cut(s) 551, 557, 767, 1487
TaiI ACGT 2 cut(s) 184, 580
TasI AATT 9 cut(s) 8, 522, 585, 597, 683, 839, 1311, 1440, 1596
TatI WGTACW 1 cut(s) 741
TauI GCSGC 5 cut(s) 21, 125, 940, 1494, 1585
TfiI GAWTC 9 cut(s) 64, 328, 355, 421, 511, 712, 1161, 1234, 1277
Tru1I TTAA 3 cut(s) 320, 644, 1443
Tru9I TTAA 3 cut(s) 320, 644, 1443
TscAI CASTG 3 cut(s) 487, 780, 1162
TseFI GTSAC 6 cut(s) 196, 289, 551, 1153, 1375, 1609
TseI GCWGC 3 cut(s) 590, 1448, 1457
Tsp45I GTSAC 6 cut(s) 196, 289, 551, 1153, 1375, 1609
TspDTI ATGAA 6 cut(s) 227, 1019, 1023, 1290, 1299, 1630
TspGWI ACGGA 2 cut(s) 32, 1192
TspRI CASTG 3 cut(s) 487, 780, 1162
Van91I CCANNNNNTGG 1 cut(s) 1268
VpaK11BI GGWCC 1 cut(s) 667
XapI RAATTY 4 cut(s) 8, 522, 1311, 1596
XceI RCATGY 1 cut(s) 1383
XspI CTAG 2 cut(s) 1325, 1660
Zsp2I ATGCAT 1 cut(s) 1480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.