Alanine aminotransferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17290 AT1G72330 AT1G72330 AT1G72330 |
| fragaria_vesca | FvH4_6g35810 FvH4_6g35810 |
| malus_domestica | MD09G1173000.v1.1 MD17G1154300.v1.1 |
| prunus_persica | Prupe.3G031100_v2.0.a1 Prupe.3G031100_v2.0.a1 |
| pyrus_communis | pycom09g09040 pycom17g14700 |
| rosa_chinensis | RchiOBHm_Chr2g0147841 |
| rosa_laevigata | RLG00000020283 |
| rosa_multiflora | Rmu_co8135398.1_g000001 Rmu_co8265871.1_g000001 Rmu_co8360303.1_g000001 Rmu_sc0000308.1_g000051 Rmu_sc0042380.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00099280 |
| rosa_rugosa | Rorug02G0402300 |
| rosa_samantha | Rh2AG459300 Rh2BG472600 Rh2CG446700 Rh2DG481600 |
| rosa_wichuraiana | Rw2G037570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1477 |
| AccB1I | GGYRCC | 1 cut(s) | 1496 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1211 |
| AccBSI | CCGCTC | 2 cut(s) | 134, 442 |
| AccI | GTMKAC | 1 cut(s) | 1131 |
| AccII | CGCG | 1 cut(s) | 1599 |
| AciI | CCGC | 8 cut(s) | 4, 18, 132, 442, 880, 1394, 1435, 1597 |
| AclWI | GGATC | 2 cut(s) | 468, 604 |
| AcoI | YGGCCR | 1 cut(s) | 1239 |
| AcsI | RAATTY | 5 cut(s) | 8, 465, 1176, 1254, 1539 |
| AcuI | CTGAAG | 2 cut(s) | 161, 1134 |
| AfaI | GTAC | 2 cut(s) | 686, 957 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1000, 1211, 1272, 1475 |
| AgsI | TTSAA | 5 cut(s) | 202, 545, 696, 775, 982 |
| AjnI | CCWGG | 4 cut(s) | 469, 838, 1468, 1499 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 767, 799 |
| AluBI | AGCT | 4 cut(s) | 78, 140, 548, 1308 |
| AluI | AGCT | 4 cut(s) | 78, 140, 548, 1308 |
| Alw21I | GWGCWC | 1 cut(s) | 1345 |
| Alw26I | GTCTC | 2 cut(s) | 333, 1051 |
| AlwI | GGATC | 2 cut(s) | 468, 604 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 457, 1492 |
| AoxI | GGCC | 2 cut(s) | 819, 1239 |
| ApeKI | GCWGC | 3 cut(s) | 533, 1391, 1400 |
| ApoI | RAATTY | 5 cut(s) | 8, 465, 1176, 1254, 1539 |
| AspS9I | GGNCC | 1 cut(s) | 819 |
| AsuC2I | CCSGG | 2 cut(s) | 276, 994 |
| AsuHPI | GGTGA | 3 cut(s) | 226, 236, 1546 |
| BaeGI | GKGCMC | 1 cut(s) | 1499 |
| BanI | GGYRCC | 1 cut(s) | 1496 |
| BauI | CACGAG | 1 cut(s) | 549 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| Bbv12I | GWGCWC | 1 cut(s) | 1345 |
| BbvI | GCAGC | 3 cut(s) | 520, 1387, 1403 |
| BccI | CCATC | 6 cut(s) | 390, 398, 548, 587, 644, 1244 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1444, 1478 |
| BciT130I | CCWGG | 4 cut(s) | 471, 840, 1470, 1501 |
| BciVI | GTATCC | 1 cut(s) | 1000 |
| BcnI | CCSGG | 2 cut(s) | 276, 994 |
| BcoDI | GTCTC | 2 cut(s) | 333, 1051 |
| BfaI | CTAG | 2 cut(s) | 1268, 1603 |
| BfmI | CTRYAG | 1 cut(s) | 141 |
| BfuAI | ACCTGC | 1 cut(s) | 1477 |
| BfuI | GTATCC | 1 cut(s) | 1000 |
| BisI | GCNGC | 7 cut(s) | 19, 132, 534, 881, 1392, 1401, 1435 |
| BlsI | GCNGC | 7 cut(s) | 20, 133, 535, 882, 1393, 1402, 1436 |
| Bme1390I | CCNGG | 6 cut(s) | 276, 471, 840, 994, 1470, 1501 |
| BmgT120I | GGNCC | 1 cut(s) | 819 |
| BmiI | GGNNCC | 2 cut(s) | 723, 1498 |
| BmrFI | CCNGG | 6 cut(s) | 276, 471, 840, 994, 1470, 1501 |
| BmsI | GCATC | 7 cut(s) | 421, 612, 752, 781, 1151, 1408, 1502 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| BpmI | CTGGAG | 1 cut(s) | 120 |
| BpuEI | CTTGAG | 1 cut(s) | 1512 |
| BpuMI | CCSGG | 2 cut(s) | 276, 994 |
| BsaAI | YACGTR | 1 cut(s) | 521 |
| BsaBI | GATNNNNATC | 1 cut(s) | 558 |
| BsaJI | CCNNGG | 7 cut(s) | 168, 192, 220, 706, 801, 822, 867 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1000, 1211, 1272, 1475 |
| Bse1I | ACTGG | 3 cut(s) | 487, 723, 1105 |
| Bse8I | GATNNNNATC | 1 cut(s) | 558 |
| BseBI | CCWGG | 4 cut(s) | 471, 840, 1470, 1501 |
| BseDI | CCNNGG | 7 cut(s) | 168, 192, 220, 706, 801, 822, 867 |
| BseGI | GGATG | 9 cut(s) | 39, 283, 382, 568, 655, 796, 1142, 1255, 1262 |
| BseJI | GATNNNNATC | 1 cut(s) | 558 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1000, 1211, 1272, 1475 |
| BseMII | CTCAG | 2 cut(s) | 338, 759 |
| BseNI | ACTGG | 3 cut(s) | 487, 723, 1105 |
| BseRI | GAGGAG | 1 cut(s) | 70 |
| BseSI | GKGCMC | 1 cut(s) | 1499 |
| BseXI | GCAGC | 3 cut(s) | 520, 1387, 1403 |
| Bsh1236I | CGCG | 1 cut(s) | 1599 |
| BshFI | GGCC | 2 cut(s) | 821, 1241 |
| BshNI | GGYRCC | 1 cut(s) | 1496 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1345 |
| BsiSI | CCGG | 2 cut(s) | 276, 994 |
| BslFI | GGGAC | 1 cut(s) | 648 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1000, 1211, 1272, 1475 |
| BsmAI | GTCTC | 2 cut(s) | 333, 1051 |
| BsmFI | GGGAC | 1 cut(s) | 648 |
| BsmI | GAATGC | 1 cut(s) | 1421 |
| BsnI | GGCC | 2 cut(s) | 821, 1241 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1345, 1499 |
| Bsp143I | GATC | 2 cut(s) | 460, 609 |
| Bsp19I | CCATGG | 1 cut(s) | 168 |
| BspACI | CCGC | 8 cut(s) | 4, 18, 132, 442, 880, 1394, 1435, 1597 |
| BspANI | GGCC | 2 cut(s) | 821, 1241 |
| BspCNI | CTCAG | 2 cut(s) | 337, 760 |
| BspFNI | CGCG | 1 cut(s) | 1599 |
| BspHI | TCATGA | 1 cut(s) | 1194 |
| BspLI | GGNNCC | 2 cut(s) | 723, 1498 |
| BspMI | ACCTGC | 1 cut(s) | 1477 |
| BspPI | GGATC | 2 cut(s) | 468, 604 |
| BspQI | GCTCTTC | 2 cut(s) | 180, 469 |
| BspT107I | GGYRCC | 1 cut(s) | 1496 |
| BsrBI | CCGCTC | 2 cut(s) | 134, 442 |
| BsrI | ACTGG | 3 cut(s) | 487, 723, 1105 |
| BssECI | CCNNGG | 7 cut(s) | 168, 192, 220, 706, 801, 822, 867 |
| BssMI | GATC | 2 cut(s) | 460, 609 |
| BssNAI | GTATAC | 1 cut(s) | 1132 |
| BssSI | CACGAG | 1 cut(s) | 549 |
| BssT1I | CCWWGG | 4 cut(s) | 168, 192, 801, 822 |
| Bst1107I | GTATAC | 1 cut(s) | 1132 |
| Bst2BI | CACGAG | 1 cut(s) | 549 |
| Bst2UI | CCWGG | 4 cut(s) | 471, 840, 1470, 1501 |
| Bst4CI | ACNGT | 3 cut(s) | 500, 710, 1347 |
| Bst6I | CTCTTC | 5 cut(s) | 88, 103, 165, 180, 469 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 485, 605, 1277 |
| BstBAI | YACGTR | 1 cut(s) | 521 |
| BstC8I | GCNNGC | 8 cut(s) | 16, 444, 601, 902, 924, 1013, 1186, 1278 |
| BstDEI | CTNAG | 3 cut(s) | 324, 768, 1309 |
| BstDSI | CCRYGG | 2 cut(s) | 168, 706 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstF5I | GGATG | 9 cut(s) | 39, 283, 382, 568, 655, 796, 1142, 1255, 1262 |
| BstFNI | CGCG | 1 cut(s) | 1599 |
| BstKTI | GATC | 2 cut(s) | 463, 612 |
| BstMAI | GTCTC | 2 cut(s) | 333, 1051 |
| BstMBI | GATC | 2 cut(s) | 460, 609 |
| BstNI | CCWGG | 4 cut(s) | 471, 840, 1470, 1501 |
| BstNSI | RCATGY | 1 cut(s) | 1326 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 6 cut(s) | 274, 469, 838, 992, 1468, 1499 |
| BstSFI | CTRYAG | 1 cut(s) | 141 |
| BstSLI | GKGCMC | 1 cut(s) | 1499 |
| BstUI | CGCG | 1 cut(s) | 1599 |
| BstV1I | GCAGC | 3 cut(s) | 520, 1387, 1403 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| BstZ17I | GTATAC | 1 cut(s) | 1132 |
| BsuI | GTATCC | 1 cut(s) | 1000 |
| BsuRI | GGCC | 2 cut(s) | 821, 1241 |
| BtgI | CCRYGG | 2 cut(s) | 168, 706 |
| BtsCI | GGATG | 9 cut(s) | 39, 283, 382, 568, 655, 796, 1142, 1255, 1262 |
| BtsIMutI | CAGTG | 4 cut(s) | 430, 716, 1098, 1343 |
| BveI | ACCTGC | 1 cut(s) | 1477 |
| Cac8I | GCNNGC | 8 cut(s) | 16, 444, 601, 902, 924, 1013, 1186, 1278 |
| CaiI | CAGNNNCTG | 2 cut(s) | 457, 1492 |
| CciI | TCATGA | 1 cut(s) | 1194 |
| Cfr13I | GGNCC | 1 cut(s) | 819 |
| Csp6I | GTAC | 2 cut(s) | 685, 956 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1438, 1473 |
| CviAII | CATG | 7 cut(s) | 169, 447, 1090, 1195, 1299, 1323, 1585 |
| CviQI | GTAC | 2 cut(s) | 685, 956 |
| DdeI | CTNAG | 3 cut(s) | 324, 768, 1309 |
| DpnI | GATC | 2 cut(s) | 462, 611 |
| DpnII | GATC | 2 cut(s) | 460, 609 |
| EaeI | YGGCCR | 1 cut(s) | 1239 |
| Eam1104I | CTCTTC | 5 cut(s) | 88, 103, 165, 180, 469 |
| EarI | CTCTTC | 5 cut(s) | 88, 103, 165, 180, 469 |
| Eco130I | CCWWGG | 4 cut(s) | 168, 192, 801, 822 |
| Eco32I | GATATC | 1 cut(s) | 560 |
| Eco57I | CTGAAG | 2 cut(s) | 161, 1134 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoO109I | RGGNCCY | 1 cut(s) | 819 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRI | GAATTC | 1 cut(s) | 1254 |
| EcoRII | CCWGG | 4 cut(s) | 469, 838, 1468, 1499 |
| EcoRV | GATATC | 1 cut(s) | 560 |
| EcoT14I | CCWWGG | 4 cut(s) | 168, 192, 801, 822 |
| EcoT22I | ATGCAT | 1 cut(s) | 1423 |
| ErhI | CCWWGG | 4 cut(s) | 168, 192, 801, 822 |
| FaeI | CATG | 7 cut(s) | 172, 450, 1093, 1198, 1302, 1326, 1588 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 67, 99, 897, 929 |
| FaqI | GGGAC | 1 cut(s) | 648 |
| FatI | CATG | 7 cut(s) | 168, 446, 1089, 1194, 1298, 1322, 1584 |
| FauI | CCCGC | 1 cut(s) | 435 |
| FauNDI | CATATG | 1 cut(s) | 615 |
| FblI | GTMKAC | 1 cut(s) | 1131 |
| Fnu4HI | GCNGC | 7 cut(s) | 19, 132, 534, 881, 1392, 1401, 1435 |
| FokI | GGATG | 9 cut(s) | 26, 270, 369, 555, 662, 803, 1129, 1249, 1262 |
| Fsp4HI | GCNGC | 7 cut(s) | 19, 132, 534, 881, 1392, 1401, 1435 |
| FspBI | CTAG | 2 cut(s) | 1268, 1603 |
| GluI | GCNGC | 7 cut(s) | 19, 132, 534, 881, 1392, 1401, 1435 |
| GsuI | CTGGAG | 1 cut(s) | 120 |
| HaeIII | GGCC | 2 cut(s) | 821, 1241 |
| HapII | CCGG | 2 cut(s) | 276, 994 |
| Hin1II | CATG | 7 cut(s) | 172, 450, 1093, 1198, 1302, 1326, 1588 |
| HinfI | GANTC | 8 cut(s) | 64, 271, 298, 454, 655, 1104, 1198, 1220 |
| HpaII | CCGG | 2 cut(s) | 276, 994 |
| HphI | GGTGA | 3 cut(s) | 226, 236, 1546 |
| Hpy166II | GTNNAC | 4 cut(s) | 518, 892, 1132, 1202 |
| Hpy188I | TCNGA | 9 cut(s) | 180, 221, 317, 359, 573, 643, 769, 1511, 1563 |
| Hpy188III | TCNNGA | 8 cut(s) | 458, 551, 734, 941, 982, 1112, 1195, 1529 |
| Hpy8I | GTNNAC | 4 cut(s) | 518, 892, 1132, 1202 |
| HpyAV | CCTTC | 9 cut(s) | 136, 165, 640, 902, 979, 1240, 1276, 1331, 1448 |
| HpyCH4III | ACNGT | 3 cut(s) | 500, 710, 1347 |
| HpyCH4IV | ACGT | 1 cut(s) | 520 |
| HpyF3I | CTNAG | 3 cut(s) | 324, 768, 1309 |
| HpySE526I | ACGT | 1 cut(s) | 520 |
| Hsp92II | CATG | 7 cut(s) | 172, 450, 1093, 1198, 1302, 1326, 1588 |
| Kzo9I | GATC | 2 cut(s) | 460, 609 |
| LguI | GCTCTTC | 2 cut(s) | 180, 469 |
| LmnI | GCTCC | 3 cut(s) | 83, 139, 1340 |
| Lsp1109I | GCAGC | 3 cut(s) | 520, 1387, 1403 |
| LweI | GCATC | 7 cut(s) | 421, 612, 752, 781, 1151, 1408, 1502 |
| MaeI | CTAG | 2 cut(s) | 1268, 1603 |
| MaeII | ACGT | 1 cut(s) | 520 |
| MaeIII | GTNAC | 9 cut(s) | 108, 232, 249, 377, 494, 1085, 1096, 1318, 1552 |
| MalI | GATC | 2 cut(s) | 462, 611 |
| MbiI | CCGCTC | 2 cut(s) | 134, 442 |
| MboI | GATC | 2 cut(s) | 460, 609 |
| MfeI | CAATTG | 4 cut(s) | 528, 626, 696, 782 |
| MhlI | GDGCHC | 2 cut(s) | 1345, 1499 |
| MlyI | GAGTC | 1 cut(s) | 1207 |
| MmeI | TCCRAC | 2 cut(s) | 95, 1192 |
| Mph1103I | ATGCAT | 1 cut(s) | 1423 |
| MseI | TTAA | 3 cut(s) | 263, 587, 1386 |
| MslI | CAYNNNNRTG | 2 cut(s) | 573, 748 |
| MspA1I | CMGCKG | 3 cut(s) | 140, 880, 1394 |
| MspI | CCGG | 2 cut(s) | 276, 994 |
| MspR9I | CCNGG | 6 cut(s) | 276, 471, 840, 994, 1470, 1501 |
| MunI | CAATTG | 4 cut(s) | 528, 626, 696, 782 |
| Mva1269I | GAATGC | 1 cut(s) | 1421 |
| MvaI | CCWGG | 4 cut(s) | 471, 840, 1470, 1501 |
| MvnI | CGCG | 1 cut(s) | 1599 |
| NciI | CCSGG | 2 cut(s) | 276, 994 |
| NcoI | CCATGG | 1 cut(s) | 168 |
| NdeI | CATATG | 1 cut(s) | 615 |
| NdeII | GATC | 2 cut(s) | 460, 609 |
| NlaIII | CATG | 7 cut(s) | 172, 450, 1093, 1198, 1302, 1326, 1588 |
| NlaIV | GGNNCC | 2 cut(s) | 723, 1498 |
| NmeAIII | GCCGAG | 2 cut(s) | 892, 1267 |
| NmuCI | GTSAC | 7 cut(s) | 108, 232, 377, 494, 1096, 1318, 1552 |
| NsiI | ATGCAT | 1 cut(s) | 1423 |
| NspI | RCATGY | 1 cut(s) | 1326 |
| PagI | TCATGA | 1 cut(s) | 1194 |
| PciSI | GCTCTTC | 2 cut(s) | 180, 469 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1596 |
| PctI | GAATGC | 1 cut(s) | 1421 |
| PfeI | GAWTC | 7 cut(s) | 64, 271, 298, 454, 655, 1104, 1220 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1211 |
| PfoI | TCCNGGA | 1 cut(s) | 469 |
| PkrI | GCNGC | 7 cut(s) | 20, 133, 535, 882, 1393, 1402, 1436 |
| PleI | GAGTC | 1 cut(s) | 1206 |
| PpsI | GAGTC | 1 cut(s) | 1206 |
| Ppu21I | YACGTR | 1 cut(s) | 521 |
| Psp6I | CCWGG | 4 cut(s) | 469, 838, 1468, 1499 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspGI | CCWGG | 4 cut(s) | 469, 838, 1468, 1499 |
| PspN4I | GGNNCC | 2 cut(s) | 723, 1498 |
| PspPI | GGNCC | 1 cut(s) | 819 |
| PstNI | CAGNNNCTG | 2 cut(s) | 457, 1492 |
| PvuII | CAGCTG | 1 cut(s) | 140 |
| RsaI | GTAC | 2 cut(s) | 686, 957 |
| RsaNI | GTAC | 2 cut(s) | 685, 956 |
| RseI | CAYNNNNRTG | 2 cut(s) | 573, 748 |
| SapI | GCTCTTC | 2 cut(s) | 180, 469 |
| SaqAI | TTAA | 3 cut(s) | 263, 587, 1386 |
| SatI | GCNGC | 7 cut(s) | 19, 132, 534, 881, 1392, 1401, 1435 |
| Sau3AI | GATC | 2 cut(s) | 460, 609 |
| Sau96I | GGNCC | 1 cut(s) | 819 |
| SchI | GAGTC | 1 cut(s) | 1207 |
| ScrFI | CCNGG | 6 cut(s) | 276, 471, 840, 994, 1470, 1501 |
| SduI | GDGCHC | 2 cut(s) | 1345, 1499 |
| SfaNI | GCATC | 7 cut(s) | 421, 612, 752, 781, 1151, 1408, 1502 |
| SfcI | CTRYAG | 1 cut(s) | 141 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 573, 748 |
| SmlI | CTYRAG | 1 cut(s) | 1527 |
| SmoI | CTYRAG | 1 cut(s) | 1527 |
| SsiI | CCGC | 8 cut(s) | 4, 18, 132, 442, 880, 1394, 1435, 1597 |
| SspMI | CTAG | 2 cut(s) | 1268, 1603 |
| StyD4I | CCNGG | 6 cut(s) | 274, 469, 838, 992, 1468, 1499 |
| StyI | CCWWGG | 4 cut(s) | 168, 192, 801, 822 |
| TaaI | ACNGT | 3 cut(s) | 500, 710, 1347 |
| TaiI | ACGT | 1 cut(s) | 523 |
| TaqII | GACCGA | 1 cut(s) | 96 |
| TatI | WGTACW | 1 cut(s) | 684 |
| TauI | GCSGC | 4 cut(s) | 21, 134, 883, 1437 |
| TfiI | GAWTC | 7 cut(s) | 64, 271, 298, 454, 655, 1104, 1220 |
| Tru1I | TTAA | 3 cut(s) | 263, 587, 1386 |
| Tru9I | TTAA | 3 cut(s) | 263, 587, 1386 |
| TscAI | CASTG | 4 cut(s) | 430, 723, 1105, 1350 |
| TseFI | GTSAC | 7 cut(s) | 108, 232, 377, 494, 1096, 1318, 1552 |
| TseI | GCWGC | 3 cut(s) | 533, 1391, 1400 |
| Tsp45I | GTSAC | 7 cut(s) | 108, 232, 377, 494, 1096, 1318, 1552 |
| TspDTI | ATGAA | 5 cut(s) | 962, 966, 1233, 1242, 1573 |
| TspGWI | ACGGA | 2 cut(s) | 32, 1135 |
| TspRI | CASTG | 4 cut(s) | 430, 723, 1105, 1350 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1211 |
| XapI | RAATTY | 5 cut(s) | 8, 465, 1176, 1254, 1539 |
| XceI | RCATGY | 1 cut(s) | 1326 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1456 |
| XmiI | GTMKAC | 1 cut(s) | 1131 |
| XspI | CTAG | 2 cut(s) | 1268, 1603 |
| Zsp2I | ATGCAT | 1 cut(s) | 1423 |