Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006553

Physical Location & Seq

Genomic Coordinates Reverse (-)

51380350 .. 51383463

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0402300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATCACAGGTACATCAACTGCTACTGTGTTATACAACTTACGGCGAAGGCATCCCACACTTGAGCTTCCCATTATTGACTATGATTTGGCTCTTCTCTTCCAACCATTACTGGTGCTGGGGATCAGCATTGGGGTTTCTTTGAATGTGGTTCTTTCTGATTGGATGATCACCATCCTACTATTTGTGGTCCTCTTAGGTGTTTCGGCCAAGTCATTTGTCAAGGGTGTTGAGACATGGAAGAAAGAAACTATGACTGAAAAGTATCTACTGGATACTTCAAGACACTTGCCTTCAAATGGGGAAGGTACCGAAAATGTTGAAGCCAAATGTACTCATGGAGGTCCAAGTAATGACTCTTTAACAGAGGCAAAGAAAGCTAAACTAGTGGAGGTTTCTATTCTCGATAATGTTTGCTGGAAGGAACTTGGAGTTATAGTGGTTGTCTGGCTCATGATACTTGCATTACAAATTGCTAAGAATTATCTGAGAAAATGTTCAATGACATATTGGTTGACAGAACTCTTACAGATTCCGGTGGCTGTGGGAGTAACTTCATATCAGGCAATGAATCTCTACAGAGGGCGTAGTGTGATTGCATCGAAGGGAGAAGCAAACCTGAAATGGTCACTGTACAAGCTAGTTGCCTATTGTGCATGTGGAGTAGCAGCTGGTATGCTTGGTGGATTACTTGGTCTTGGTGGAGCATTTCTGTTGGGTCCGATATTTTTGGAGATGGGAATCCCTCCTCAGGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006522 GO:0006524 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009078 GO:0009080 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0016740 GO:0016769 GO:0017076 GO:0019481 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036293 GO:0042221 GO:0042851 GO:0042853 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046686 GO:0047635 GO:0050896 GO:0070482 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00710 ko01100 ko01120 ko01200 ko01210 ko01230 map00220 map00250 map00710 map01100 map01120 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

253

Amino Acids

27.7

Weight (kDa)

8.52

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17290 AT1G72330 AT1G72330 AT1G72330
fragaria_vesca	FvH4_6g35810 FvH4_6g35810
malus_domestica	MD09G1173000.v1.1 MD17G1154300.v1.1
prunus_persica	Prupe.3G031100_v2.0.a1 Prupe.3G031100_v2.0.a1
pyrus_communis	pycom09g09040 pycom17g14700
rosa_chinensis	RchiOBHm_Chr2g0147841
rosa_laevigata	RLG00000020283
rosa_multiflora	Rmu_co8135398.1_g000001 Rmu_co8265871.1_g000001 Rmu_co8360303.1_g000001 Rmu_sc0000308.1_g000051 Rmu_sc0042380.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099280
rosa_rugosa	Rorug02G0402300
rosa_samantha	Rh2AG459300 Rh2BG472600 Rh2CG446700 Rh2DG481600
rosa_wichuraiana	Rw2G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	4 cut(s)	13, 310, 334, 635
AfiI	CCNNNNNNNGG	2 cut(s)	299, 751
AgsI	TTSAA	5 cut(s)	145, 282, 297, 323, 501
AhlI	ACTAGT	1 cut(s)	385
AluBI	AGCT	4 cut(s)	67, 380, 640, 671
AluI	AGCT	4 cut(s)	67, 380, 640, 671
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	668
Asp700I	GAANNNNTTC	1 cut(s)	496
Asp718I	GGTACC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	190, 344, 719
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	3 cut(s)	190, 344, 719
AxyI	CCTNAGG	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	2 cut(s)	182, 730
BceAI	ACGGC	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	268
BclI	TGATCA	2 cut(s)	3, 168
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	2 cut(s)	386, 641
BfmI	CTRYAG	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	268
BisI	GCNGC	1 cut(s)	669
BlsI	GCNGC	1 cut(s)	670
Bme18I	GGWCC	3 cut(s)	190, 344, 719
BmgT120I	GGNCC	3 cut(s)	190, 344, 719
BmiI	GGNNCC	2 cut(s)	310, 720
BmsI	GCATC	2 cut(s)	61, 608
BpuEI	CTTGAG	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	173, 740
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 751
Bse1I	ACTGG	2 cut(s)	117, 276
Bse21I	CCTNAGG	1 cut(s)	750
Bse3DI	GCAATG	1 cut(s)	573
Bse8I	GATNNNNATC	2 cut(s)	173, 740
BseGI	GGATG	3 cut(s)	52, 171, 174
BseJI	GATNNNNATC	2 cut(s)	173, 740
BseLI	CCNNNNNNNGG	2 cut(s)	299, 751
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	117, 276
BseRI	GAGGAG	1 cut(s)	738
BseXI	GCAGC	1 cut(s)	680
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	299, 751
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	3, 123, 168
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	310, 720
BspPI	GGATC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	573
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	117, 276
BssMI	GATC	3 cut(s)	3, 123, 168
Bst4CI	ACNGT	2 cut(s)	28, 633
Bst6I	CTCTTC	2 cut(s)	99, 104
BstAUI	TGTACA	1 cut(s)	633
BstDEI	CTNAG	4 cut(s)	196, 477, 488, 750
BstF5I	GGATG	3 cut(s)	52, 171, 174
BstKTI	GATC	3 cut(s)	6, 126, 171
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	3, 123, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 653
BstNSI	RCATGY	1 cut(s)	660
BstSFI	CTRYAG	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	680
Bsu36I	CCTNAGG	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	52, 171, 174
BtsIMutI	CAGTG	1 cut(s)	629
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	3 cut(s)	190, 344, 719
Csp6I	GTAC	4 cut(s)	12, 309, 333, 634
CviAII	CATG	4 cut(s)	237, 338, 454, 657
CviJI	RGCY	9 cut(s)	67, 92, 209, 326, 380, 451, 542, 640, 671
CviKI_1	RGCY	9 cut(s)	67, 92, 209, 326, 380, 451, 542, 640, 671
CviQI	GTAC	4 cut(s)	12, 309, 333, 634
DdeI	CTNAG	4 cut(s)	196, 477, 488, 750
DpnI	GATC	3 cut(s)	5, 125, 170
DpnII	GATC	3 cut(s)	3, 123, 168
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	99, 104
EarI	CTCTTC	2 cut(s)	99, 104
Eco47I	GGWCC	3 cut(s)	190, 344, 719
Eco81I	CCTNAGG	1 cut(s)	750
FaeI	CATG	4 cut(s)	240, 341, 457, 660
FatI	CATG	4 cut(s)	236, 337, 453, 656
FbaI	TGATCA	2 cut(s)	3, 168
Fnu4HI	GCNGC	1 cut(s)	669
FokI	GGATG	3 cut(s)	39, 161, 178
Fsp4HI	GCNGC	1 cut(s)	669
FspBI	CTAG	2 cut(s)	386, 641
GluI	GCNGC	1 cut(s)	669
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	4 cut(s)	240, 341, 457, 660
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	4 cut(s)	356, 532, 571, 741
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	3 cut(s)	160, 489, 723
Hpy188III	TCNNGA	3 cut(s)	282, 404, 454
Hpy8I	GTNNAC	1 cut(s)	516
HpyAV	CCTTC	5 cut(s)	42, 299, 303, 415, 598
HpyCH4III	ACNGT	2 cut(s)	28, 633
HpyCH4V	TGCA	3 cut(s)	464, 599, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 653
HpyF3I	CTNAG	4 cut(s)	196, 477, 488, 750
Hsp92II	CATG	4 cut(s)	240, 341, 457, 660
KpnI	GGTACC	1 cut(s)	312
Ksp22I	TGATCA	2 cut(s)	3, 168
Kzo9I	GATC	3 cut(s)	3, 123, 168
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	704
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	2 cut(s)	61, 608
MaeI	CTAG	2 cut(s)	386, 641
MaeIII	GTNAC	2 cut(s)	550, 627
MalI	GATC	3 cut(s)	5, 125, 170
MboI	GATC	3 cut(s)	3, 123, 168
MboII	GAAGA	3 cut(s)	86, 91, 253
MluCI	AATT	2 cut(s)	471, 481
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	203, 335, 361, 385, 575, 756, 759
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	2 cut(s)	362, 760
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	377, 653
NdeII	GATC	3 cut(s)	3, 123, 168
NlaIII	CATG	4 cut(s)	240, 341, 457, 660
NlaIV	GGNNCC	2 cut(s)	310, 720
NmuCI	GTSAC	1 cut(s)	627
NspI	RCATGY	1 cut(s)	660
PagI	TCATGA	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	532, 571, 741
PkrI	GCNGC	1 cut(s)	670
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	310, 720
PspPI	GGNCC	3 cut(s)	190, 344, 719
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	4 cut(s)	13, 310, 334, 635
RsaNI	GTAC	4 cut(s)	12, 309, 333, 634
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	362, 760
SatI	GCNGC	1 cut(s)	669
Sau3AI	GATC	3 cut(s)	3, 123, 168
Sau96I	GGNCC	3 cut(s)	190, 344, 719
SchI	GAGTC	1 cut(s)	350
SfaNI	GCATC	2 cut(s)	61, 608
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	3 cut(s)	190, 344, 719
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	2 cut(s)	471, 481
SspMI	CTAG	2 cut(s)	386, 641
TaaI	ACNGT	2 cut(s)	28, 633
TaqI	TCGA	2 cut(s)	405, 602
TasI	AATT	2 cut(s)	471, 481
TatI	WGTACW	2 cut(s)	332, 633
TfiI	GAWTC	3 cut(s)	532, 571, 741
Tru1I	TTAA	2 cut(s)	362, 760
Tru9I	TTAA	2 cut(s)	362, 760
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	1 cut(s)	668
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	2 cut(s)	546, 584
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	3 cut(s)	190, 344, 719
XceI	RCATGY	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	2 cut(s)	386, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.