Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0006553

Physical Location & Seq

Genomic Coordinates Reverse (-)

231575 .. 233129

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000308.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgcaggttccttactatcttgatgaggcatcagggtggggattggaaatttctgacttgaagaagcaactagaggatgcaaagtctaagggtgtcagtgtaagagccttggttgttataaatccaggcaacccaactgggcaggttcttgctgaggacaaccaacggcagattgtggagttctgcaagcaagaaggtcttgttttactggcagatgaggtatatcaagagaacatatatgttcctgataaggagtttcattcattcaagaaggtagcaaggtctatgggatacggtgagacggatattccactggtatcttttcaatcagtctctaaagggtactacggggagtgtggaaaaagaggtggatacatggaagtcactggatttagtcctgaagtgagggaacaaatatacaaaatggcatcggtcaatctttgttctaatatcagtggtcaaattcttgcaagcctagtcatgagtccaccaaaggttggagatgaatcctatgaattgtatctttcagagaaagatggaattctgtcatccctaaaaaggcgtgcaaagacactagaggatgcgttgaacagcctggagggtgtgacatgcaacagagctgagggggcaatgtatctgtttcctcgcatagacctgcctcaaaaggcaatcaaagcagcagaggctgaaaagacagctccagatgcattctattgcaaacgtcttctgaatgccactggaattgttgttgttcctggttctggtttcgggcaggttcctggcacctggcattttagatgcacaatcttgcctcaagaggataaaattccagctatcgtcaaccgtctaacagagtttcacaaaaagttcatggacgagtttcgcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006522 GO:0006524 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009078 GO:0009080 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0016740 GO:0016769 GO:0017076 GO:0019481 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036293 GO:0042221 GO:0042851 GO:0042853 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046686 GO:0047635 GO:0050896 GO:0070482 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00710 ko01100 ko01120 ko01200 ko01210 ko01230 map00220 map00250 map00710 map01100 map01120 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

296

Amino Acids

32.94

Weight (kDa)

5.48

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17290 AT1G72330 AT1G72330 AT1G72330
fragaria_vesca	FvH4_6g35810 FvH4_6g35810
malus_domestica	MD09G1173000.v1.1 MD17G1154300.v1.1
prunus_persica	Prupe.3G031100_v2.0.a1 Prupe.3G031100_v2.0.a1
pyrus_communis	pycom09g09040 pycom17g14700
rosa_chinensis	RchiOBHm_Chr2g0147841
rosa_laevigata	RLG00000020283
rosa_multiflora	Rmu_co8135398.1_g000001 Rmu_co8265871.1_g000001 Rmu_co8360303.1_g000001 Rmu_sc0000308.1_g000051 Rmu_sc0042380.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099280
rosa_rugosa	Rorug02G0402300
rosa_samantha	Rh2AG459300 Rh2BG472600 Rh2CG446700 Rh2DG481600
rosa_wichuraiana	Rw2G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
Acc36I	ACCTGC	3 cut(s)	133, 663, 763
AccB1I	GGYRCC	1 cut(s)	782
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccII	CGCG	1 cut(s)	885
AcsI	RAATTY	4 cut(s)	48, 462, 540, 825
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	497, 558, 761
AgsI	TTSAA	4 cut(s)	61, 268, 326, 589
AjnI	CCWGG	5 cut(s)	124, 594, 754, 778, 785
AluBI	AGCT	3 cut(s)	620, 698, 833
AluI	AGCT	3 cut(s)	620, 698, 833
Alw26I	GTCTC	2 cut(s)	293, 337
AlwNI	CAGNNNCTG	1 cut(s)	686
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	4 cut(s)	48, 462, 540, 825
AsuHPI	GGTGA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	716
BbvCI	CCTCAGC	2 cut(s)	153, 621
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	5 cut(s)	126, 596, 756, 780, 787
BciVI	GTATCC	2 cut(s)	284, 365
BcoDI	GTCTC	2 cut(s)	293, 337
BfaI	CTAG	4 cut(s)	71, 476, 575, 889
BfuAI	ACCTGC	3 cut(s)	133, 663, 763
BfuI	GTATCC	2 cut(s)	284, 365
BisI	GCNGC	1 cut(s)	678
BlsI	GCNGC	1 cut(s)	679
Bme1390I	CCNGG	5 cut(s)	126, 596, 756, 780, 787
BmiI	GGNNCC	3 cut(s)	9, 777, 784
BmrFI	CCNGG	5 cut(s)	126, 596, 756, 780, 787
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	6 cut(s)	38, 67, 437, 571, 694, 788
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	2 cut(s)	617, 684
Bpu10I	CCTNAGC	2 cut(s)	153, 621
BpuEI	CTTGAG	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 558, 761
Bse1I	ACTGG	5 cut(s)	142, 213, 318, 391, 742
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	5 cut(s)	126, 596, 756, 780, 787
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	82, 548, 586
BseLI	CCNNNNNNNGG	3 cut(s)	497, 558, 761
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	144, 612
BseNI	ACTGG	5 cut(s)	142, 213, 318, 391, 742
BseXI	GCAGC	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	885
BshNI	GGYRCC	1 cut(s)	782
BslI	CCNNNNNNNGG	3 cut(s)	497, 558, 761
BsmAI	GTCTC	2 cut(s)	293, 337
BsmBI	CGTCTC	1 cut(s)	293
BsmI	GAATGC	2 cut(s)	707, 736
Bsp68I	TCGCGA	1 cut(s)	885
BspCNI	CTCAG	2 cut(s)	145, 613
BspFNI	CGCG	1 cut(s)	885
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	9, 777, 784
BspMI	ACCTGC	3 cut(s)	133, 663, 763
BspT107I	GGYRCC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	5 cut(s)	142, 213, 318, 391, 742
BssECI	CCNNGG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	5 cut(s)	126, 596, 756, 780, 787
Bst4CI	ACNGT	2 cut(s)	296, 845
BstC8I	GCNNGC	3 cut(s)	188, 472, 564
BstDEI	CTNAG	3 cut(s)	87, 153, 621
BstF5I	GGATG	3 cut(s)	82, 548, 586
BstFNI	CGCG	1 cut(s)	885
BstMAI	GTCTC	2 cut(s)	293, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	626, 674, 683, 704
BstNI	CCWGG	5 cut(s)	126, 596, 756, 780, 787
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	5 cut(s)	124, 594, 754, 778, 785
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	1 cut(s)	689
BstV2I	GAAGAC	1 cut(s)	716
BsuI	GTATCC	2 cut(s)	284, 365
BtsCI	GGATG	3 cut(s)	82, 548, 586
BtsIMutI	CAGTG	5 cut(s)	103, 311, 384, 460, 735
BtuMI	TCGCGA	1 cut(s)	885
BveI	ACCTGC	3 cut(s)	133, 663, 763
Cac8I	GCNNGC	3 cut(s)	188, 472, 564
CaiI	CAGNNNCTG	1 cut(s)	686
CciI	TCATGA	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	4 cut(s)	376, 481, 609, 871
CviJI	RGCY	7 cut(s)	107, 474, 594, 620, 686, 698, 833
CviKI_1	RGCY	7 cut(s)	107, 474, 594, 620, 686, 698, 833
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	87, 153, 621
Eco130I	CCWWGG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	5 cut(s)	124, 594, 754, 778, 785
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	4 cut(s)	379, 484, 612, 874
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	4 cut(s)	375, 480, 608, 870
Fnu4HI	GCNGC	1 cut(s)	678
FokI	GGATG	3 cut(s)	89, 535, 593
Fsp4HI	GCNGC	1 cut(s)	678
FspBI	CTAG	4 cut(s)	71, 476, 575, 889
GluI	GCNGC	1 cut(s)	678
GsuI	CTGGAG	2 cut(s)	617, 684
Hin1II	CATG	4 cut(s)	379, 484, 612, 874
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	2 cut(s)	484, 506
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	488, 841
Hpy188I	TCNGA	3 cut(s)	55, 529, 729
Hpy188III	TCNNGA	9 cut(s)	20, 227, 245, 268, 398, 481, 701, 815, 884
Hpy8I	GTNNAC	2 cut(s)	488, 841
HpyAV	CCTTC	2 cut(s)	188, 265
HpyCH4III	ACNGT	2 cut(s)	296, 845
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	9 cut(s)	4, 80, 186, 470, 566, 612, 707, 717, 801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	626, 674, 683, 704
HpyF3I	CTNAG	3 cut(s)	87, 153, 621
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	4 cut(s)	379, 484, 612, 874
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	6 cut(s)	38, 67, 437, 571, 694, 788
MaeI	CTAG	4 cut(s)	71, 476, 575, 889
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	2 cut(s)	382, 604
MboII	GAAGA	2 cut(s)	73, 716
MluCI	AATT	6 cut(s)	48, 462, 515, 540, 741, 825
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	478
Mph1103I	ATGCAT	1 cut(s)	709
MslI	CAYNNNNRTG	1 cut(s)	34
MspR9I	CCNGG	5 cut(s)	126, 596, 756, 780, 787
Mva1269I	GAATGC	2 cut(s)	707, 736
MvaI	CCWGG	5 cut(s)	126, 596, 756, 780, 787
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	4 cut(s)	626, 674, 683, 704
NlaIII	CATG	4 cut(s)	379, 484, 612, 874
NlaIV	GGNNCC	3 cut(s)	9, 777, 784
NmuCI	GTSAC	2 cut(s)	382, 604
NruI	TCGCGA	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	612
PagI	TCATGA	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PctI	GAATGC	2 cut(s)	707, 736
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	679
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PsiI	TTATAA	1 cut(s)	119
Psp6I	CCWGG	5 cut(s)	124, 594, 754, 778, 785
PspGI	CCWGG	5 cut(s)	124, 594, 754, 778, 785
PspN4I	GGNNCC	3 cut(s)	9, 777, 784
PstNI	CAGNNNCTG	1 cut(s)	686
RruI	TCGCGA	1 cut(s)	885
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	34
SatI	GCNGC	1 cut(s)	678
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	5 cut(s)	126, 596, 756, 780, 787
SfaNI	GCATC	6 cut(s)	38, 67, 437, 571, 694, 788
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
Sse9I	AATT	6 cut(s)	48, 462, 515, 540, 741, 825
SspMI	CTAG	4 cut(s)	71, 476, 575, 889
StyD4I	CCNGG	5 cut(s)	124, 594, 754, 778, 785
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	296, 845
TaiI	ACGT	1 cut(s)	724
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	6 cut(s)	48, 462, 515, 540, 741, 825
TfiI	GAWTC	1 cut(s)	506
TscAI	CASTG	5 cut(s)	103, 318, 391, 460, 742
TseFI	GTSAC	2 cut(s)	382, 604
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	2 cut(s)	382, 604
TspDTI	ATGAA	5 cut(s)	248, 252, 519, 528, 859
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	5 cut(s)	103, 318, 391, 460, 742
Van91I	CCANNNNNTGG	1 cut(s)	497
XapI	RAATTY	4 cut(s)	48, 462, 540, 825
XceI	RCATGY	1 cut(s)	612
XspI	CTAG	4 cut(s)	71, 476, 575, 889
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.