Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042380.1

Orthogroup ID

OG0006553

Physical Location & Seq

Genomic Coordinates Forward (+)

60 .. 2379

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042380.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgcggagattcgtaagcggcagactcagaagcctcgtcgtccattctttacagaccaaacagcagattcgccctcagcagcagacacctctatttctcagtcgtttcttgtccgctgctccagctctcgacttcccatcttccatggctgacaaatctccttctcctctcactgtcactgttgggaatatcaatcccaaggttgtgaagtgtgaatatgctgtccgaggtgaaattgtcattcttgctgggaaaattcaagaagagttgaaggctaatccagactctcatccttttgatgagatactttactgcaatatcggaaatcctcagtctcttggccagcaaccaatcacttatttccgagaggttcttgcattgtgtgaccatccatccatcttggacaagagtgaaacgcaaggcttgttcagcgccgattcaattgagcgggcatgggaggttctagatcaaattcctggaagagcaactggtgcttacagtcacagtcagggtatcaaggggttacgtgacacaattgctgctggaattgaagctcgtgatggatatccttctgatccaaatgatcttttcttaacagatggtgcaagccctgcggtccatatgatgttgacattgctgttaagatcagaaaaggatgggattctttgtcccattcctcaataccctttgtactccgcttcaattgcgctccatggtggcacactggtatgtctggatttaaccacccaacttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006522 GO:0006524 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009078 GO:0009080 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0016740 GO:0016769 GO:0017076 GO:0019481 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036293 GO:0042221 GO:0042851 GO:0042853 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046686 GO:0047635 GO:0050896 GO:0070482 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00710 ko01100 ko01120 ko01200 ko01210 ko01230 map00220 map00250 map00710 map01100 map01120 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

252

Amino Acids

27.57

Weight (kDa)

5.86

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17290 AT1G72330 AT1G72330 AT1G72330
fragaria_vesca	FvH4_6g35810 FvH4_6g35810
malus_domestica	MD09G1173000.v1.1 MD17G1154300.v1.1
prunus_persica	Prupe.3G031100_v2.0.a1 Prupe.3G031100_v2.0.a1
pyrus_communis	pycom09g09040 pycom17g14700
rosa_chinensis	RchiOBHm_Chr2g0147841
rosa_laevigata	RLG00000020283
rosa_multiflora	Rmu_co8135398.1_g000001 Rmu_co8265871.1_g000001 Rmu_co8360303.1_g000001 Rmu_sc0000308.1_g000051 Rmu_sc0042380.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099280
rosa_rugosa	Rorug02G0402300
rosa_samantha	Rh2AG459300 Rh2BG472600 Rh2CG446700 Rh2DG481600
rosa_wichuraiana	Rw2G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	448
AciI	CCGC	6 cut(s)	4, 18, 114, 448, 614, 696
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	255, 471
AfaI	GTAC	1 cut(s)	692
AgsI	TTSAA	6 cut(s)	260, 271, 441, 551, 702, 755
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	2 cut(s)	125, 554
AluI	AGCT	2 cut(s)	125, 554
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	79, 116, 539
ApoI	RAATTY	2 cut(s)	255, 471
AspLEI	GCGC	2 cut(s)	434, 709
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	342
BauI	CACGAG	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	91, 103, 526
BccI	CCATC	7 cut(s)	145, 396, 400, 404, 554, 593, 650
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	435
BisI	GCNGC	4 cut(s)	19, 80, 117, 540
BlsI	GCNGC	4 cut(s)	20, 81, 118, 541
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	144, 198, 226, 712
Bse1I	ACTGG	2 cut(s)	493, 729
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	144, 198, 226, 712
BseGI	GGATG	4 cut(s)	289, 388, 392, 661
BseJI	GATNNNNATC	1 cut(s)	564
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	4 cut(s)	40, 89, 112, 344
BseNI	ACTGG	2 cut(s)	493, 729
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	91, 103, 526
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	466, 574, 583, 644
Bsp19I	CCATGG	2 cut(s)	144, 712
BspACI	CCGC	6 cut(s)	4, 18, 114, 448, 614, 696
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	4 cut(s)	39, 88, 111, 343
BspPI	GGATC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	493, 729
BssECI	CCNNGG	4 cut(s)	144, 198, 226, 712
BssMI	GATC	4 cut(s)	466, 574, 583, 644
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	3 cut(s)	144, 198, 712
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	4 cut(s)	175, 181, 500, 506
Bst6I	CTCTTC	2 cut(s)	258, 475
BstAPI	GCANNNNNTGC	2 cut(s)	491, 611
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	344, 450, 607
BstDEI	CTNAG	4 cut(s)	26, 75, 98, 330
BstDSI	CCRYGG	2 cut(s)	144, 712
BstF5I	GGATG	4 cut(s)	289, 388, 392, 661
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	434, 709
BstKTI	GATC	4 cut(s)	469, 577, 586, 647
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	4 cut(s)	466, 574, 583, 644
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 429, 491, 611, 704
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	91, 103, 526
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	2 cut(s)	144, 712
BtsCI	GGATG	4 cut(s)	289, 388, 392, 661
BtsIMutI	CAGTG	3 cut(s)	171, 177, 722
Cac8I	GCNNGC	3 cut(s)	344, 450, 607
CfoI	GCGC	2 cut(s)	434, 709
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	3 cut(s)	145, 453, 713
CviJI	RGCY	8 cut(s)	33, 125, 149, 275, 342, 423, 554, 609
CviKI_1	RGCY	8 cut(s)	33, 125, 149, 275, 342, 423, 554, 609
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	4 cut(s)	26, 75, 98, 330
DpnI	GATC	4 cut(s)	468, 576, 585, 646
DpnII	GATC	4 cut(s)	466, 574, 583, 644
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	258, 475
EarI	CTCTTC	2 cut(s)	258, 475
Eco130I	CCWWGG	3 cut(s)	144, 198, 712
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	144, 198, 712
ErhI	CCWWGG	3 cut(s)	144, 198, 712
FaeI	CATG	3 cut(s)	148, 456, 716
FaiI	YATR	7 cut(s)	146, 219, 454, 621, 623, 714, 730
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	3 cut(s)	144, 452, 712
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	19, 80, 117, 540
FokI	GGATG	4 cut(s)	276, 375, 379, 668
Fsp4HI	GCNGC	4 cut(s)	19, 80, 117, 540
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	2 cut(s)	433, 708
GluI	GCNGC	4 cut(s)	19, 80, 117, 540
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	434, 709
Hin1II	CATG	3 cut(s)	148, 456, 716
Hin6I	GCGC	2 cut(s)	432, 707
HinP1I	GCGC	2 cut(s)	432, 707
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	6 cut(s)	9, 24, 67, 284, 437, 661
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	6 cut(s)	29, 227, 323, 365, 574, 649
Hpy188III	TCNNGA	6 cut(s)	128, 260, 281, 464, 557, 734
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	171, 265, 579
HpyCH4III	ACNGT	4 cut(s)	175, 181, 500, 506
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	3 cut(s)	315, 377, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 429, 491, 611, 704
HpyF3I	CTNAG	4 cut(s)	26, 75, 98, 330
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	3 cut(s)	148, 456, 716
HspAI	GCGC	2 cut(s)	432, 707
Kzo9I	GATC	4 cut(s)	466, 574, 583, 644
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	2 cut(s)	124, 714
Lsp1109I	GCAGC	3 cut(s)	91, 103, 526
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	5 cut(s)	175, 383, 500, 522, 527
MalI	GATC	4 cut(s)	468, 576, 585, 646
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	4 cut(s)	466, 574, 583, 644
MboII	GAAGA	3 cut(s)	132, 275, 492
MfeI	CAATTG	3 cut(s)	441, 534, 702
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	7 cut(s)	234, 255, 441, 471, 534, 546, 702
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	18, 278
MnlI	CCTC	9 cut(s)	44, 84, 99, 177, 221, 339, 361, 451, 687
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	3 cut(s)	593, 641, 740
MslI	CAYNNNNRTG	1 cut(s)	727
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	3 cut(s)	441, 534, 702
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	5 cut(s)	122, 429, 491, 611, 704
NcoI	CCATGG	2 cut(s)	144, 712
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	4 cut(s)	466, 574, 583, 644
NlaIII	CATG	3 cut(s)	148, 456, 716
NmuCI	GTSAC	4 cut(s)	175, 383, 500, 527
PciSI	GCTCTTC	1 cut(s)	475
PfeI	GAWTC	4 cut(s)	9, 67, 437, 661
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	20, 81, 118, 541
PleI	GAGTC	2 cut(s)	18, 278
PpsI	GAGTC	2 cut(s)	18, 278
Ppu21I	YACGTR	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	616
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	727
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	593, 641, 740
SatI	GCNGC	4 cut(s)	19, 80, 117, 540
Sau3AI	GATC	4 cut(s)	466, 574, 583, 644
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	2 cut(s)	18, 278
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	8 cut(s)	91, 127, 204, 232, 372, 462, 529, 556
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	727
Sse9I	AATT	7 cut(s)	234, 255, 441, 471, 534, 546, 702
SsiI	CCGC	6 cut(s)	4, 18, 114, 448, 614, 696
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	3 cut(s)	144, 198, 712
TaaI	ACNGT	4 cut(s)	175, 181, 500, 506
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	1 cut(s)	129
TasI	AATT	7 cut(s)	234, 255, 441, 471, 534, 546, 702
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	9, 67, 437, 661
Tru1I	TTAA	3 cut(s)	593, 641, 740
Tru9I	TTAA	3 cut(s)	593, 641, 740
TscAI	CASTG	3 cut(s)	178, 184, 729
TseFI	GTSAC	4 cut(s)	175, 383, 500, 527
TseI	GCWGC	3 cut(s)	79, 116, 539
Tsp45I	GTSAC	4 cut(s)	175, 383, 500, 527
TspRI	CASTG	3 cut(s)	178, 184, 729
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	2 cut(s)	255, 471
XbaI	TCTAGA	1 cut(s)	463
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.