FvH4_6g35810

Alanine aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28243677 .. 28248864
5188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35810.t2

Sequence Viewer

Length: 1626 bp
ATGCGGAGATTCGTGAACGGCAGACTGAGAAGCCTCATCGTCCATTCTTTACAACAGACCAAACAGCACCCGATTCGTCCTCACCAGCACCAAACACCTCCTCTACTTCTAAGTCGTTTCTTGTCCTCCTCCACTTCAGTTGTCGACGTCCCGAATTCCATGGCTGACAAATCTCCTCATCCGGCTACTGTTACTGTTGACAATATCAATCCCAAGGTTGTGAAGTGTGAATATGCTGTCCGAGGTGAAATTGTCATTCTTGCCGGGAAACTTCAAGAACAGTTGAAGGCTAATCCAGGCTCTCTTCCTTTTGATGAGATACTTTACTGCAATATTGGAAATCCTCAGTCTCTTGGTCAGCAACCAATCACTTATTTCCGAGAGGTTCTTGCATTGTGTGACCATCCAGCCATCTTGGACAAGAGTGAAACACAAGGCTTGTTCAGTGCTGATTCAATTGAACGGGCATGGGAGATTCTAGACCAGATTCCTGGAAGAGCAACCGGTGCTTACAGTCACAGTCAGGGTATCAAGGGGTTACGTGACTCAATTGCTGCTGGAATTGAAGCTCGTGATGGCTATCCTTCTGATCCAAATGATCTTTTCTTAACAGATGGTGCAAGCCCTGCGGTCCATACGATGATGACGTTGCTGATAAGATCAGAAAAGGATGGGATTCTTTGTCCCATTCCTCAATACCCTTTGTACTCTGCTTCAATTGCTCTCCATGGTGGCACACTGGTTCCTTACTATCTTGATGAGGCATCAGGGTGGGGATTGGAAATTTCTGATTTAAAGAAGCAATTAGAGGATGCAAGGTCGAAGGGTGTCAGTGTAAGGGCCTTGGTCGTTATAAATCCAGGCAACCCAACTGGTCAGGTTCTTGCCGAGGACAACCAGCGGCAGATTGTGGAATTCTGTAAGCAAGAAGGGCTTGTTTTACTGGCAGACGAGGTGTATCAAGAGAACGTATATGTTCCTGATAAGGAGTTTCATTCATTCAAGAAGGTAACCCGGTCTATGGGTTACGGTGAGAATGATATTGCACTCGTATCTTTCCAATCAGTCTCTAAAGGGTACTATGGGGAGTGTGGAAAAAGAGGTGGATACATGGAGGTCACTGGATTCAGTCCTGAAGTGAGGGAACAAATATACAAAATGGCATCCGTCAATCTTTGTTCTAATATCAGTGGTCAAATTCTTTCAAGCCTTGTGATGAGTCCACCAAAGGTTGGAGATGAATCCTATGAGTTGTATCTTTCAGAGAAAGATGGAATTCTGTCATCTCTTAAAAGGCGTGCAAAGACGTTAGAGGATGCGTTGAATAGCCTGGAGGGTGTGACATGCAACAGAGCTGAGGGGGCAATGTACCTCTTTCCCCGCATAGAACTGCCTCAAAAGGCAATCCATGCAGCAGAAGCTGCAAAGACGGCTCCAGATGCATTCTATTGCAAACGCCTACTGAATGCCACTGGAATTGTAGTTGTTCCTGGTTCTGGTTTCGGACAGGTTCCTGGCACCTGGCATTTCAGATGCACAATCCTGCCTCAAGAGGATAAAATTCCAGCCGTCGTCGACCGTCTAACAGAGTTCCACAAAAAATTCATGGACGAGTTCCGTGACTAG

Protein Analysis

542

Amino Acids

59.67

Weight (kDa)

5.96

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 165 - 527 1.5e-40 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 854
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 1517
AccB7I CCANNNNNTGG 1 cut(s) 1232
AccI GTMKAC 2 cut(s) 144, 1575
AciI CCGC 4 cut(s) 4, 629, 901, 1381
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 7 cut(s) 154, 783, 914, 1197, 1275, 1560, 1601
AcuI CTGAAG 2 cut(s) 120, 1155
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 3 cut(s) 707, 1079, 1370
AfiI CCNNNNNNNGG 3 cut(s) 1021, 1232, 1496
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 9 cut(s) 275, 286, 456, 461, 566, 717, 1003, 1206, 1324
AjnI CCWGG 7 cut(s) 295, 490, 859, 1329, 1489, 1513, 1520
AluBI AGCT 3 cut(s) 569, 1355, 1421
AluI AGCT 3 cut(s) 569, 1355, 1421
Alw26I GTCTC 2 cut(s) 354, 1072
AlwI GGATC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 1421
AoxI GGCC 1 cut(s) 840
ApeKI GCWGC 3 cut(s) 554, 1412, 1421
ApoI RAATTY 7 cut(s) 154, 783, 914, 1197, 1275, 1560, 1601
AsiGI ACCGGT 1 cut(s) 503
AspS9I GGNCC 2 cut(s) 631, 840
AsuC2I CCSGG 2 cut(s) 265, 1015
AsuHPI GGTGA 3 cut(s) 74, 257, 1043
AvaII GGWCC 1 cut(s) 631
BanI GGYRCC 1 cut(s) 1517
BauI CACGAG 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 1356
BbvI GCAGC 3 cut(s) 541, 1408, 1424
BccI CCATC 6 cut(s) 411, 419, 569, 608, 665, 1265
BceAI ACGGC 3 cut(s) 34, 1446, 1553
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 7 cut(s) 297, 492, 861, 1331, 1491, 1515, 1522
BciVI GTATCC 1 cut(s) 1100
BcnI CCSGG 2 cut(s) 265, 1015
BcoDI GTCTC 2 cut(s) 354, 1072
BfaI CTAG 2 cut(s) 479, 1624
BfuI GTATCC 1 cut(s) 1100
BisI GCNGC 4 cut(s) 555, 902, 1413, 1422
BlsI GCNGC 4 cut(s) 556, 903, 1414, 1423
Bme1390I CCNGG 9 cut(s) 265, 297, 492, 861, 1015, 1331, 1491, 1515, 1522
Bme18I GGWCC 1 cut(s) 631
BmgT120I GGNCC 2 cut(s) 631, 840
BmiI GGNNCC 4 cut(s) 744, 1434, 1512, 1519
BmrFI CCNGG 9 cut(s) 265, 297, 492, 861, 1015, 1331, 1491, 1515, 1522
BmsI GCATC 6 cut(s) 773, 802, 1172, 1306, 1429, 1523
BpmI CTGGAG 2 cut(s) 1352, 1419
Bpu10I CCTNAGC 1 cut(s) 1356
BpuEI CTTGAG 1 cut(s) 1533
BpuMI CCSGG 2 cut(s) 265, 1015
BsaAI YACGTR 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 6 cut(s) 159, 213, 241, 727, 843, 888
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 3 cut(s) 1021, 1232, 1496
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 5 cut(s) 744, 877, 948, 1126, 1477
Bse3DI GCAATG 1 cut(s) 1371
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 7 cut(s) 297, 492, 861, 1331, 1491, 1515, 1522
BseDI CCNNGG 6 cut(s) 159, 213, 241, 727, 843, 888
BseGI GGATG 6 cut(s) 178, 403, 676, 817, 1163, 1321
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 1021, 1232, 1496
BseMI GCAATG 1 cut(s) 1371
BseMII CTCAG 3 cut(s) 17, 359, 1347
BseNI ACTGG 5 cut(s) 744, 877, 948, 1126, 1477
BseRI GAGGAG 3 cut(s) 90, 118, 165
BseXI GCAGC 3 cut(s) 541, 1408, 1424
Bsh1285I CGRYCG 1 cut(s) 1579
BshFI GGCC 1 cut(s) 842
BshNI GGYRCC 1 cut(s) 1517
BshTI ACCGGT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 1579
BsiSI CCGG 4 cut(s) 182, 264, 504, 1015
BslFI GGGAC 2 cut(s) 134, 669
BslI CCNNNNNNNGG 3 cut(s) 1021, 1232, 1496
BsmAI GTCTC 2 cut(s) 354, 1072
BsmFI GGGAC 2 cut(s) 134, 669
BsmI GAATGC 2 cut(s) 1442, 1471
BsnI GGCC 1 cut(s) 842
Bsp143I GATC 3 cut(s) 589, 598, 659
Bsp19I CCATGG 2 cut(s) 159, 727
BspACI CCGC 4 cut(s) 4, 629, 901, 1381
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 3 cut(s) 18, 358, 1348
BspLI GGNNCC 4 cut(s) 744, 1434, 1512, 1519
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 1517
BsrDI GCAATG 1 cut(s) 1371
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 5 cut(s) 744, 877, 948, 1126, 1477
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 6 cut(s) 159, 213, 241, 727, 843, 888
BssMI GATC 3 cut(s) 589, 598, 659
BssNI GRCGYC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 4 cut(s) 159, 213, 727, 843
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 7 cut(s) 297, 492, 861, 1331, 1491, 1515, 1522
Bst4CI ACNGT 7 cut(s) 190, 196, 282, 515, 521, 1031, 1580
Bst6I CTCTTC 2 cut(s) 309, 490
BstACI GRCGYC 1 cut(s) 147
BstAPI GCANNNNNTGC 4 cut(s) 506, 626, 1409, 1421
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 622, 1299
BstDEI CTNAG 4 cut(s) 26, 110, 345, 1356
BstDSI CCRYGG 2 cut(s) 159, 727
BstEII GGTNACC 1 cut(s) 1009
BstF5I GGATG 6 cut(s) 178, 403, 676, 817, 1163, 1321
BstKTI GATC 3 cut(s) 592, 601, 662
BstMAI GTCTC 2 cut(s) 354, 1072
BstMBI GATC 3 cut(s) 589, 598, 659
BstMCI CGRYCG 1 cut(s) 1579
BstNI CCWGG 7 cut(s) 297, 492, 861, 1331, 1491, 1515, 1522
BstNSI RCATGY 1 cut(s) 1347
BstPI GGTNACC 1 cut(s) 1009
BstSCI CCNGG 9 cut(s) 263, 295, 490, 859, 1013, 1329, 1489, 1513, 1520
BstV1I GCAGC 3 cut(s) 541, 1408, 1424
BstXI CCANNNNNNTGG 1 cut(s) 491
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 1 cut(s) 842
BtgI CCRYGG 2 cut(s) 159, 727
BtsCI GGATG 6 cut(s) 178, 403, 676, 817, 1163, 1321
BtsIMutI CAGTG 6 cut(s) 451, 737, 838, 1119, 1195, 1470
Cac8I GCNNGC 2 cut(s) 622, 1299
CaiI CAGNNNCTG 1 cut(s) 1421
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 631, 840
Csp6I GTAC 3 cut(s) 706, 1078, 1369
CspAI ACCGGT 1 cut(s) 503
CspCI CAANNNNNGTGG 4 cut(s) 121, 156, 1459, 1494
CviAII CATG 7 cut(s) 160, 468, 728, 1111, 1344, 1409, 1606
CviQI GTAC 3 cut(s) 706, 1078, 1369
DdeI CTNAG 4 cut(s) 26, 110, 345, 1356
DpnI GATC 3 cut(s) 591, 600, 661
DpnII GATC 3 cut(s) 589, 598, 659
DraI TTTAAA 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 309, 490
EarI CTCTTC 2 cut(s) 309, 490
Eco130I CCWWGG 4 cut(s) 159, 213, 727, 843
Eco47I GGWCC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 120, 1155
Eco91I GGTNACC 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 840
EcoO65I GGTNACC 1 cut(s) 1009
EcoRI GAATTC 3 cut(s) 154, 914, 1275
EcoRII CCWGG 7 cut(s) 295, 490, 859, 1329, 1489, 1513, 1520
EcoT14I CCWWGG 4 cut(s) 159, 213, 727, 843
EcoT22I ATGCAT 1 cut(s) 1444
ErhI CCWWGG 4 cut(s) 159, 213, 727, 843
FaeI CATG 7 cut(s) 163, 471, 731, 1114, 1347, 1412, 1609
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 2 cut(s) 134, 669
FatI CATG 7 cut(s) 159, 467, 727, 1110, 1343, 1408, 1605
FauI CCCGC 1 cut(s) 1388
FblI GTMKAC 2 cut(s) 144, 1575
Fnu4HI GCNGC 4 cut(s) 555, 902, 1413, 1422
FokI GGATG 6 cut(s) 165, 390, 683, 824, 1150, 1328
Fsp4HI GCNGC 4 cut(s) 555, 902, 1413, 1422
FspBI CTAG 2 cut(s) 479, 1624
GluI GCNGC 4 cut(s) 555, 902, 1413, 1422
GsuI CTGGAG 2 cut(s) 1352, 1419
HaeIII GGCC 1 cut(s) 842
HapII CCGG 4 cut(s) 182, 264, 504, 1015
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 7 cut(s) 163, 471, 731, 1114, 1347, 1412, 1609
HincII GTYRAC 3 cut(s) 145, 199, 1576
HindII GTYRAC 3 cut(s) 145, 199, 1576
HpaII CCGG 4 cut(s) 182, 264, 504, 1015
HphI GGTGA 3 cut(s) 74, 257, 1043
Hpy166II GTNNAC 5 cut(s) 16, 145, 199, 1223, 1576
Hpy188I TCNGA 8 cut(s) 242, 380, 589, 664, 790, 1264, 1505, 1532
Hpy8I GTNNAC 5 cut(s) 16, 145, 199, 1223, 1576
Hpy99I CGWCG 3 cut(s) 149, 1574, 1577
HpyAV CCTTC 5 cut(s) 280, 594, 817, 923, 1000
HpyCH4III ACNGT 7 cut(s) 190, 196, 282, 515, 521, 1031, 1580
HpyCH4IV ACGT 5 cut(s) 147, 541, 647, 969, 1307
HpyF3I CTNAG 4 cut(s) 26, 110, 345, 1356
HpySE526I ACGT 5 cut(s) 147, 541, 647, 969, 1307
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 7 cut(s) 163, 471, 731, 1114, 1347, 1412, 1609
Kzo9I GATC 3 cut(s) 589, 598, 659
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 1438
Lsp1109I GCAGC 3 cut(s) 541, 1408, 1424
LweI GCATC 6 cut(s) 773, 802, 1172, 1306, 1429, 1523
MaeI CTAG 2 cut(s) 479, 1624
MaeII ACGT 5 cut(s) 147, 541, 647, 969, 1307
MalI GATC 3 cut(s) 591, 600, 661
MboI GATC 3 cut(s) 589, 598, 659
MboII GAAGA 2 cut(s) 296, 507
MfeI CAATTG 3 cut(s) 456, 549, 717
MlyI GAGTC 2 cut(s) 539, 1228
MmeI TCCRAC 1 cut(s) 1213
Mph1103I ATGCAT 1 cut(s) 1444
MseI TTAA 3 cut(s) 608, 794, 1290
MslI CAYNNNNRTG 1 cut(s) 769
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 4 cut(s) 182, 264, 504, 1015
MspR9I CCNGG 9 cut(s) 265, 297, 492, 861, 1015, 1331, 1491, 1515, 1522
MunI CAATTG 3 cut(s) 456, 549, 717
Mva1269I GAATGC 2 cut(s) 1442, 1471
MvaI CCWGG 7 cut(s) 297, 492, 861, 1331, 1491, 1515, 1522
NciI CCSGG 2 cut(s) 265, 1015
NcoI CCATGG 2 cut(s) 159, 727
NdeII GATC 3 cut(s) 589, 598, 659
NlaIII CATG 7 cut(s) 163, 471, 731, 1114, 1347, 1412, 1609
NlaIV GGNNCC 4 cut(s) 744, 1434, 1512, 1519
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 6 cut(s) 398, 515, 542, 1117, 1339, 1619
NsiI ATGCAT 1 cut(s) 1444
NspI RCATGY 1 cut(s) 1347
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PctI GAATGC 2 cut(s) 1442, 1471
PfeI GAWTC 8 cut(s) 9, 73, 452, 475, 487, 676, 1125, 1241
PflMI CCANNNNNTGG 1 cut(s) 1232
PfoI TCCNGGA 1 cut(s) 490
PinAI ACCGGT 1 cut(s) 503
PkrI GCNGC 4 cut(s) 556, 903, 1414, 1423
PleI GAGTC 2 cut(s) 539, 1227
PpsI GAGTC 2 cut(s) 539, 1227
Ppu21I YACGTR 1 cut(s) 542
PsiI TTATAA 1 cut(s) 854
Psp6I CCWGG 7 cut(s) 295, 490, 859, 1329, 1489, 1513, 1520
PspEI GGTNACC 1 cut(s) 1009
PspGI CCWGG 7 cut(s) 295, 490, 859, 1329, 1489, 1513, 1520
PspN4I GGNNCC 4 cut(s) 744, 1434, 1512, 1519
PspPI GGNCC 2 cut(s) 631, 840
PstNI CAGNNNCTG 1 cut(s) 1421
RsaI GTAC 3 cut(s) 707, 1079, 1370
RsaNI GTAC 3 cut(s) 706, 1078, 1369
RseI CAYNNNNRTG 1 cut(s) 769
SalI GTCGAC 2 cut(s) 143, 1574
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 608, 794, 1290
SatI GCNGC 4 cut(s) 555, 902, 1413, 1422
Sau3AI GATC 3 cut(s) 589, 598, 659
Sau96I GGNCC 2 cut(s) 631, 840
SchI GAGTC 2 cut(s) 539, 1228
ScrFI CCNGG 9 cut(s) 265, 297, 492, 861, 1015, 1331, 1491, 1515, 1522
SfaNI GCATC 6 cut(s) 773, 802, 1172, 1306, 1429, 1523
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 769
SmlI CTYRAG 1 cut(s) 1548
SmoI CTYRAG 1 cut(s) 1548
SsiI CCGC 4 cut(s) 4, 629, 901, 1381
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 479, 1624
StyD4I CCNGG 9 cut(s) 263, 295, 490, 859, 1013, 1329, 1489, 1513, 1520
StyI CCWWGG 4 cut(s) 159, 213, 727, 843
TaaI ACNGT 7 cut(s) 190, 196, 282, 515, 521, 1031, 1580
TaiI ACGT 5 cut(s) 150, 544, 650, 972, 1310
TaqI TCGA 3 cut(s) 144, 821, 1575
TatI WGTACW 1 cut(s) 705
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 8 cut(s) 9, 73, 452, 475, 487, 676, 1125, 1241
Tru1I TTAA 3 cut(s) 608, 794, 1290
Tru9I TTAA 3 cut(s) 608, 794, 1290
TscAI CASTG 6 cut(s) 451, 744, 838, 1126, 1195, 1477
TseFI GTSAC 6 cut(s) 398, 515, 542, 1117, 1339, 1619
TseI GCWGC 3 cut(s) 554, 1412, 1421
Tsp45I GTSAC 6 cut(s) 398, 515, 542, 1117, 1339, 1619
TspDTI ATGAA 4 cut(s) 983, 987, 1254, 1594
TspGWI ACGGA 2 cut(s) 1156, 1607
TspRI CASTG 6 cut(s) 451, 744, 838, 1126, 1195, 1477
Van91I CCANNNNNTGG 1 cut(s) 1232
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 7 cut(s) 154, 783, 914, 1197, 1275, 1560, 1601
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 1347
XmiI GTMKAC 2 cut(s) 144, 1575
XspI CTAG 2 cut(s) 479, 1624
ZraI GACGTC 1 cut(s) 148
Zsp2I ATGCAT 1 cut(s) 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.