Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Forward (+)

27402814 .. 27404674

Gene Structure 1861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAATTTGGGTGCGGCCGAGGAAGAATCGGCTCAGGAGATTCATTTACCAGCTGATATCAATTGGGAGATGCTTGATAAATCCAAGTTTTTCGTTTTAGGCGCTGCTTTGTTTTCAGGGGTATCTGGAGCTCTTTATCCTGCGGTTTTGATGAAAACTCGGCAACAAGTGTGTCATTCGCAAGGTTCTTGTATTAAAACTGCGTTTACTCTTGTGAGACATGAAGGTTTAAGGGGATTGTACAGAGGATTTGGAACTTCTTTGATGGGAACTATCCCTGCTCGTGCTTTGTACATGACTGCCTTGGAGGTTACTAAGAGTAACGTAGGCTCTGCTGCTGTCAGCTTGGGGTTGACAGAGGCTAAAGCTGCTGCTGTTGCTAATGCGGTTGGAGGTTTGAGTGCTGCGATGGCTGCACAGCTTGTTTGGACTCCTGTTGATGTGGTTAGCCAAAGGCTTATGGTTCAAGGAAGTGCTGGTCTTGTTAATGCATCAAGGTGTAATTATGTTAACGGGTTTGATGCATTTAGAAAGATCGTTCGCGCTGATGGACCGAAGGGGTTATACAGAGGGTTTGGGATATCGATTCTGACTTATGCGCCGTCTAATGCTGTTTGGTGGGCGTCTTACTCTGTTGCACAGCGGATGGTTTGGGGTGGAATTGGGTGTTATGTCTGTAAGAAAGACGAAGAAAGCGGGAACAATAGTACCACGATGAAACCAGATTCTAAAACGATAATGGCTGTTCAAGGAGTTAGTGCTGCGATTGCTGGAAGTGTTTCTGCTTTGATTACAATGCCACTCGACACAATCAAGACGAGATTGCAGGTTCTTGATGGGGAAGATAGTAGTAACAACGGGAAGCGTGGACCGAGTATTGGACAGACTGTAAGAAACTTGGTTAGAGAAGGTGGATGGACGGCTTGTTATAGAGGATTGGGACCAAGATGTGCTTCAATGTCAATGTCTGCAACAACTATGATCACTACCTACGAGTTCTTGAAACGGCTTTCTGCTAAGAACCATGACGGGTTTTATTCTAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

349

Amino Acids

37.13

Weight (kDa)

9.35

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	42 - 108	1.4e-11	Mitochondrial carrier protein
Mito_carr	PF00153	125 - 217	4.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	250 - 340	9.1e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	817
AccII	CGCG	1 cut(s)	543
AciI	CCGC	5 cut(s)	14, 143, 386, 643, 696
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	623
AfaI	GTAC	3 cut(s)	242, 293, 709
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	4 cut(s)	467, 749, 957, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	937, 969
AluBI	AGCT	5 cut(s)	53, 131, 345, 368, 421
AluI	AGCT	5 cut(s)	53, 131, 345, 368, 421
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	7 cut(s)	104, 335, 368, 371, 404, 413, 761
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	778
AspLEI	GCGC	3 cut(s)	104, 545, 601
AspS9I	GGNCC	3 cut(s)	551, 869, 941
AvaII	GGWCC	3 cut(s)	551, 869, 941
BaeI	ACNNNNGTAYC	2 cut(s)	691, 724
BanII	GRGCYC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	7 cut(s)	91, 322, 355, 358, 391, 400, 748
BccI	CCATC	6 cut(s)	259, 403, 542, 640, 830, 909
BceAI	ACGGC	3 cut(s)	586, 936, 1022
BclI	TGATCA	1 cut(s)	981
BcoDI	GTCTC	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	8 cut(s)	15, 105, 336, 369, 372, 405, 414, 762
BlsI	GCNGC	8 cut(s)	16, 106, 337, 370, 373, 406, 415, 763
Bme18I	GGWCC	3 cut(s)	551, 869, 941
BmgT120I	GGNCC	3 cut(s)	551, 869, 941
BmiI	GGNNCC	1 cut(s)	942
BmsI	GCATC	3 cut(s)	60, 500, 511
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	18, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
BseCI	ATCGAT	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	18, 303
BseGI	GGATG	2 cut(s)	651, 920
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	7 cut(s)	91, 322, 355, 358, 391, 400, 748
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	543
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	584
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	954
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	954
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp1407I	TGTACA	2 cut(s)	240, 291
Bsp143I	GATC	2 cut(s)	534, 981
BspACI	CCGC	5 cut(s)	14, 143, 386, 643, 696
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	942
BspMI	ACCTGC	1 cut(s)	817
BsrGI	TGTACA	2 cut(s)	240, 291
BssECI	CCNNGG	2 cut(s)	18, 303
BssMI	GATC	2 cut(s)	534, 981
BssNI	GRCGYC	1 cut(s)	623
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	889
BstACI	GRCGYC	1 cut(s)	623
BstAUI	TGTACA	2 cut(s)	240, 291
BstDEI	CTNAG	3 cut(s)	33, 315, 1017
BstF5I	GGATG	2 cut(s)	651, 920
BstFNI	CGCG	1 cut(s)	543
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	3 cut(s)	104, 545, 601
BstKTI	GATC	2 cut(s)	537, 984
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	534, 981
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	5 cut(s)	368, 377, 410, 413, 767
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	7 cut(s)	91, 322, 355, 358, 391, 400, 748
BstZI	CGGCCG	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	584
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	651, 920
BveI	ACCTGC	1 cut(s)	817
CfoI	GCGC	3 cut(s)	104, 545, 601
Cfr13I	GGNCC	3 cut(s)	551, 869, 941
ClaI	ATCGAT	1 cut(s)	584
CseI	GACGC	1 cut(s)	612
Csp6I	GTAC	3 cut(s)	241, 292, 708
CviAII	CATG	3 cut(s)	221, 295, 1025
CviQI	GTAC	3 cut(s)	241, 292, 708
DdeI	CTNAG	3 cut(s)	33, 315, 1017
DpnI	GATC	2 cut(s)	536, 983
DpnII	GATC	2 cut(s)	534, 981
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	131
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	133
Eco32I	GATATC	2 cut(s)	58, 582
Eco47I	GGWCC	3 cut(s)	551, 869, 941
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoRV	GATATC	2 cut(s)	58, 582
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	2 cut(s)	493, 526
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	224, 298, 1028
FalI	AAGNNNNNCTT	2 cut(s)	937, 969
FaqI	GGGAC	1 cut(s)	954
FatI	CATG	3 cut(s)	220, 294, 1024
FauI	CCCGC	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	8 cut(s)	15, 105, 336, 369, 372, 405, 414, 762
FokI	GGATG	2 cut(s)	658, 927
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	8 cut(s)	15, 105, 336, 369, 372, 405, 414, 762
GlaI	GCGC	3 cut(s)	103, 544, 600
GluI	GCNGC	8 cut(s)	15, 105, 336, 369, 372, 405, 414, 762
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	17
HgaI	GACGC	1 cut(s)	612
HhaI	GCGC	3 cut(s)	104, 545, 601
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	224, 298, 1028
Hin6I	GCGC	3 cut(s)	102, 543, 599
HinP1I	GCGC	3 cut(s)	102, 543, 599
HincII	GTYRAC	2 cut(s)	354, 511
HindII	GTYRAC	2 cut(s)	354, 511
HinfI	GANTC	5 cut(s)	26, 40, 430, 586, 725
HpaI	GTTAAC	1 cut(s)	511
Hpy166II	GTNNAC	4 cut(s)	207, 354, 511, 869
Hpy188I	TCNGA	1 cut(s)	591
Hpy188III	TCNNGA	5 cut(s)	35, 126, 814, 833, 1000
Hpy8I	GTNNAC	4 cut(s)	207, 354, 511, 869
HpyAV	CCTTC	3 cut(s)	218, 550, 902
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	6 cut(s)	416, 491, 524, 638, 826, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	368, 377, 410, 413, 767
HpyF3I	CTNAG	3 cut(s)	33, 315, 1017
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	3 cut(s)	224, 298, 1028
HspAI	GCGC	3 cut(s)	102, 543, 599
Ksp22I	TGATCA	1 cut(s)	981
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	534, 981
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	7 cut(s)	91, 322, 355, 358, 391, 400, 748
LweI	GCATC	3 cut(s)	60, 500, 511
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	310, 320, 851
MalI	GATC	2 cut(s)	536, 983
MboI	GATC	2 cut(s)	534, 981
MboII	GAAGA	3 cut(s)	35, 701, 854
MfeI	CAATTG	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	4 cut(s)	4, 61, 502, 660
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	13, 239, 301, 352, 386, 563, 926
Mph1103I	ATGCAT	2 cut(s)	493, 526
MroXI	GAANNNNTTC	1 cut(s)	778
MseI	TTAA	4 cut(s)	195, 230, 486, 510
MslI	CAYNNNNRTG	1 cut(s)	496
MspA1I	CMGCKG	2 cut(s)	53, 643
MunI	CAATTG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	5 cut(s)	368, 377, 410, 413, 767
NdeII	GATC	2 cut(s)	534, 981
NlaIII	CATG	3 cut(s)	224, 298, 1028
NlaIV	GGNNCC	1 cut(s)	942
NmeAIII	GCCGAG	2 cut(s)	43, 139
NsiI	ATGCAT	2 cut(s)	493, 526
PdmI	GAANNNNTTC	1 cut(s)	778
PfeI	GAWTC	4 cut(s)	26, 40, 586, 725
PkrI	GCNGC	8 cut(s)	16, 106, 337, 370, 373, 406, 415, 763
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	942
PspPI	GGNCC	3 cut(s)	551, 869, 941
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	242, 293, 709
RsaNI	GTAC	3 cut(s)	241, 292, 708
RseI	CAYNNNNRTG	1 cut(s)	496
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	195, 230, 486, 510
SatI	GCNGC	8 cut(s)	15, 105, 336, 369, 372, 405, 414, 762
Sau3AI	GATC	2 cut(s)	534, 981
Sau96I	GGNCC	3 cut(s)	551, 869, 941
SchI	GAGTC	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	60, 500, 511
SinI	GGWCC	3 cut(s)	551, 869, 941
SmiMI	CAYNNNNRTG	1 cut(s)	496
Sse9I	AATT	4 cut(s)	4, 61, 502, 660
SsiI	CCGC	5 cut(s)	14, 143, 386, 643, 696
SstI	GAGCTC	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	889
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	584, 804
TaqII	GACCGA	2 cut(s)	568, 886
TasI	AATT	4 cut(s)	4, 61, 502, 660
TatI	WGTACW	2 cut(s)	240, 291
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	4 cut(s)	26, 40, 586, 725
Tru1I	TTAA	4 cut(s)	195, 230, 486, 510
Tru9I	TTAA	4 cut(s)	195, 230, 486, 510
TseI	GCWGC	7 cut(s)	104, 335, 368, 371, 404, 413, 761
TspDTI	ATGAA	5 cut(s)	17, 32, 167, 237, 731
VpaK11BI	GGWCC	3 cut(s)	551, 869, 941
XapI	RAATTY	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	778
Zsp2I	ATGCAT	2 cut(s)	493, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.