Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000227.1

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

23148 .. 24191

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000227.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgaatttgagagtcgccgaggatgaatcggcgaaaaaagagattcatatcccggccgaaatcgactgggaaatgcttgataaatccaagttctttttcctcggagcggcgctcttttccggcgtatcggcgactctctaccctgttgtggttttgaaaaccaggcaacaagtatctcagtctcagctctcgtgtatcaagacggcgttttccatcgtcaggcatgaaggatttcgggcattgtatagaggcttcgggacttctttgatgggcacagtacctgcccgggcgctgtacatggcggcgcttgagatcaccaagagtaatgtgggcgctgccaccgttaggttagggttttcggagtcgtccgctgccgcaattgccaatgcggttgcagggttgagtgcggcgatggcggctcagcttgtgtggactccaattgatgttgtgagtcagagactgatggtgcaaggcggtgtgaatccgaatccgaatgccaagtttcctaaagcgtcttcttgtaaatatgttaatgggtatgatgctttcaggaaaattcttcggagtgatgggccgagggggttgtatagagggttcgggatttcgattttgacatatgcaccatccaatgcggtttggtgggcatcatactctgtggctcagaggatggtttggaggggagttgggtattattcttgtaagagcaatgaggatggggttaacacgtataggcctgattcgaagacaataatggcagttcagggagccagtgcagccatggcgggtggcgtgtcagctttgatcacaatgccactcgacacggtcaagacaaggctgcaagttctggatggggatgacaatggccggcggggaccaggcattgggcagactgttcggaatttggttaaagaaggcgggtggatggcttgttacagaggattggggccaaggtgggcctcaatgtcgatttctgcaaccaccatgatcaccacctatgagtttctgaaacggctctccactaagaatcaagaggttttgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

347

Amino Acids

37.6

Weight (kDa)

9.73

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccBSI	CCGCTC	1 cut(s)	107
AcoI	YGGCCR	2 cut(s)	54, 862
AcsI	RAATTY	3 cut(s)	4, 555, 898
AfaI	GTAC	2 cut(s)	279, 296
AfiI	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 881
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	161, 874
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	3 cut(s)	187, 424, 797
AluI	AGCT	3 cut(s)	187, 424, 797
Alw26I	GTCTC	2 cut(s)	186, 451
AlwNI	CAGNNNCTG	2 cut(s)	281, 460
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	6 cut(s)	54, 572, 731, 862, 944, 954
ApeKI	GCWGC	4 cut(s)	335, 371, 773, 835
ApoI	RAATTY	3 cut(s)	4, 555, 898
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	4 cut(s)	112, 292, 307, 335
AspS9I	GGNCC	4 cut(s)	572, 872, 944, 954
AsuC2I	CCSGG	3 cut(s)	53, 286, 287
AsuHPI	GGTGA	2 cut(s)	307, 979
AsuII	TTCGAA	1 cut(s)	740
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	872
BaeGI	GKGCMC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	507, 749
BbvI	GCAGC	4 cut(s)	322, 358, 785, 822
BceAI	ACGGC	2 cut(s)	219, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	2 cut(s)	163, 876
BclI	TGATCA	2 cut(s)	801, 984
BcnI	CCSGG	3 cut(s)	53, 286, 287
BcoDI	GTCTC	2 cut(s)	186, 451
BfoI	RGCGCY	4 cut(s)	113, 293, 308, 336
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 774, 836
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	9 cut(s)	109, 304, 337, 373, 376, 409, 418, 775, 837
Bme1390I	CCNGG	5 cut(s)	53, 163, 286, 287, 876
Bme18I	GGWCC	1 cut(s)	872
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	572, 872, 944, 954
BmiI	GGNNCC	3 cut(s)	766, 873, 945
BmrFI	CCNGG	5 cut(s)	53, 163, 286, 287, 876
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	532, 653
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	2 cut(s)	507, 749
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	3 cut(s)	53, 286, 287
BsaAI	YACGTR	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	6 cut(s)	18, 100, 285, 575, 777, 947
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 881
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	71, 768
Bse3DI	GCAATG	1 cut(s)	712
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	163, 876
BseDI	CCNNGG	6 cut(s)	18, 100, 285, 575, 777, 947
BseGI	GGATG	7 cut(s)	28, 623, 672, 718, 853, 859, 927
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 881
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	4 cut(s)	191, 197, 434, 674
BseNI	ACTGG	2 cut(s)	71, 768
BseSI	GKGCMC	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	322, 358, 785, 822
BsgI	GTGCAG	1 cut(s)	792
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	6 cut(s)	56, 574, 733, 864, 946, 956
BsiEI	CGRYCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	53, 120, 286, 865
BslFI	GGGAC	2 cut(s)	271, 885
BslI	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 881
BsmAI	GTCTC	2 cut(s)	186, 451
BsmFI	GGGAC	2 cut(s)	271, 885
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	6 cut(s)	56, 574, 733, 864, 946, 956
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	312, 801, 984
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	777
BspANI	GGCC	6 cut(s)	56, 574, 733, 864, 946, 956
BspCNI	CTCAG	4 cut(s)	190, 196, 433, 673
BspLI	GGNNCC	3 cut(s)	766, 873, 945
BspMI	ACCTGC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	740
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	864
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	71, 768
BssAI	RCCGGY	1 cut(s)	864
BssECI	CCNNGG	6 cut(s)	18, 100, 285, 575, 777, 947
BssMI	GATC	3 cut(s)	312, 801, 984
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	777, 947
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	163, 876
Bst4CI	ACNGT	4 cut(s)	277, 343, 823, 892
BstAUI	TGTACA	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	726
BstBI	TTCGAA	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	866
BstDEI	CTNAG	5 cut(s)	177, 183, 420, 660, 1020
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	7 cut(s)	28, 623, 672, 718, 853, 859, 927
BstH2I	RGCGCY	4 cut(s)	113, 293, 308, 336
BstHHI	GCGC	4 cut(s)	112, 292, 307, 335
BstKTI	GATC	3 cut(s)	315, 804, 987
BstMAI	GTCTC	2 cut(s)	186, 451
BstMBI	GATC	3 cut(s)	312, 801, 984
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 413, 416, 773, 779
BstNI	CCWGG	2 cut(s)	163, 876
BstSCI	CCNGG	5 cut(s)	51, 161, 284, 285, 874
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	322, 358, 785, 822
BstV2I	GAAGAC	2 cut(s)	507, 749
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	6 cut(s)	56, 574, 733, 864, 946, 956
BtgI	CCRYGG	1 cut(s)	777
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	7 cut(s)	28, 623, 672, 718, 853, 859, 927
BtsIMutI	CAGTG	1 cut(s)	775
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	866
CaiI	CAGNNNCTG	2 cut(s)	281, 460
CfoI	GCGC	4 cut(s)	112, 292, 307, 335
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	4 cut(s)	572, 872, 944, 954
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	278, 295
CviAII	CATG	5 cut(s)	224, 298, 778, 982, 1041
CviQI	GTAC	2 cut(s)	278, 295
DdeI	CTNAG	5 cut(s)	177, 183, 420, 660, 1020
DpnI	GATC	3 cut(s)	314, 803, 986
DpnII	GATC	3 cut(s)	312, 801, 984
EaeI	YGGCCR	2 cut(s)	54, 862
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	777, 947
Eco147I	AGGCCT	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	872
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	161, 874
EcoT14I	CCWWGG	2 cut(s)	777, 947
ErhI	CCWWGG	2 cut(s)	777, 947
FaeI	CATG	5 cut(s)	227, 301, 781, 985, 1044
FaqI	GGGAC	2 cut(s)	271, 885
FatI	CATG	5 cut(s)	223, 297, 777, 981, 1040
FauI	CCCGC	3 cut(s)	775, 861, 908
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	2 cut(s)	801, 984
Fnu4HI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 774, 836
FokI	GGATG	7 cut(s)	35, 610, 679, 725, 860, 866, 934
Fsp4HI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 774, 836
GlaI	GCGC	4 cut(s)	111, 291, 306, 334
GluI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 774, 836
HaeII	RGCGCY	4 cut(s)	113, 293, 308, 336
HaeIII	GGCC	6 cut(s)	56, 574, 733, 864, 946, 956
HapII	CCGG	4 cut(s)	53, 120, 286, 865
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	4 cut(s)	112, 292, 307, 335
Hin1II	CATG	5 cut(s)	227, 301, 781, 985, 1044
Hin6I	GCGC	4 cut(s)	110, 290, 305, 333
HinP1I	GCGC	4 cut(s)	110, 290, 305, 333
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HpaI	GTTAAC	1 cut(s)	721
HpaII	CCGG	4 cut(s)	53, 120, 286, 865
HphI	GGTGA	2 cut(s)	307, 979
Hpy166II	GTNNAC	2 cut(s)	432, 721
Hpy188I	TCNGA	9 cut(s)	104, 361, 456, 486, 492, 564, 663, 897, 1005
Hpy188III	TCNNGA	7 cut(s)	199, 256, 550, 598, 826, 845, 1028
Hpy8I	GTNNAC	2 cut(s)	432, 721
HpyAV	CCTTC	2 cut(s)	221, 905
HpyCH4III	ACNGT	4 cut(s)	277, 343, 823, 892
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	6 cut(s)	395, 469, 620, 773, 838, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 413, 416, 773, 779
HpyF3I	CTNAG	5 cut(s)	177, 183, 420, 660, 1020
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	5 cut(s)	227, 301, 781, 985, 1044
HspAI	GCGC	4 cut(s)	110, 290, 305, 333
KroI	GCCGGC	1 cut(s)	864
KroNI	GCCGGC	1 cut(s)	866
Ksp22I	TGATCA	2 cut(s)	801, 984
KspAI	GTTAAC	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	312, 801, 984
LmnI	GCTCC	2 cut(s)	104, 764
Lsp1109I	GCAGC	4 cut(s)	322, 358, 785, 822
LweI	GCATC	2 cut(s)	532, 653
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	929
MalI	GATC	3 cut(s)	314, 803, 986
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	3 cut(s)	312, 801, 984
MboII	GAAGA	3 cut(s)	507, 551, 754
MfeI	CAATTG	2 cut(s)	378, 438
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	5 cut(s)	4, 378, 438, 555, 898
MlyI	GAGTC	5 cut(s)	21, 127, 371, 427, 460
MroNI	GCCGGC	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	531, 720, 906
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	4 cut(s)	53, 120, 286, 865
MspR9I	CCNGG	5 cut(s)	53, 163, 286, 287, 876
MunI	CAATTG	2 cut(s)	378, 438
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	2 cut(s)	163, 876
MwoI	GCNNNNNNNGC	5 cut(s)	380, 413, 416, 773, 779
NaeI	GCCGGC	1 cut(s)	866
NciI	CCSGG	3 cut(s)	53, 286, 287
NcoI	CCATGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	3 cut(s)	312, 801, 984
NgoMIV	GCCGGC	1 cut(s)	864
NlaIII	CATG	5 cut(s)	227, 301, 781, 985, 1044
NlaIV	GGNNCC	3 cut(s)	766, 873, 945
NmeAIII	GCCGAG	2 cut(s)	43, 600
NspV	TTCGAA	1 cut(s)	740
PceI	AGGCCT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	6 cut(s)	26, 43, 481, 487, 737, 1024
PflFI	GACNNNGTC	1 cut(s)	821
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	9 cut(s)	109, 304, 337, 373, 376, 409, 418, 775, 837
PleI	GAGTC	5 cut(s)	20, 127, 370, 427, 459
PpsI	GAGTC	5 cut(s)	20, 127, 370, 427, 459
Ppu21I	YACGTR	1 cut(s)	726
Psp6I	CCWGG	2 cut(s)	161, 874
PspGI	CCWGG	2 cut(s)	161, 874
PspN4I	GGNNCC	3 cut(s)	766, 873, 945
PspPI	GGNCC	4 cut(s)	572, 872, 944, 954
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
PstNI	CAGNNNCTG	2 cut(s)	281, 460
PsyI	GACNNNGTC	1 cut(s)	821
RsaI	GTAC	2 cut(s)	279, 296
RsaNI	GTAC	2 cut(s)	278, 295
SaqAI	TTAA	3 cut(s)	531, 720, 906
SatI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 774, 836
Sau3AI	GATC	3 cut(s)	312, 801, 984
Sau96I	GGNCC	4 cut(s)	572, 872, 944, 954
SchI	GAGTC	5 cut(s)	21, 127, 371, 427, 460
ScrFI	CCNGG	5 cut(s)	53, 163, 286, 287, 876
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	9 cut(s)	189, 283, 350, 426, 728, 799, 953, 995, 1035
SfaNI	GCATC	2 cut(s)	532, 653
SfuI	TTCGAA	1 cut(s)	740
SinI	GGWCC	1 cut(s)	872
SmaI	CCCGGG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SrfI	GCCCGGGC	1 cut(s)	287
Sse9I	AATT	5 cut(s)	4, 378, 438, 555, 898
SseBI	AGGCCT	1 cut(s)	733
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	5 cut(s)	51, 161, 284, 285, 874
StyI	CCWWGG	2 cut(s)	777, 947
TaaI	ACNGT	4 cut(s)	277, 343, 823, 892
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	5 cut(s)	63, 605, 740, 816, 965
TasI	AATT	5 cut(s)	4, 378, 438, 555, 898
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	5 cut(s)	110, 305, 377, 410, 419
TfiI	GAWTC	6 cut(s)	26, 43, 481, 487, 737, 1024
Tru1I	TTAA	3 cut(s)	531, 720, 906
Tru9I	TTAA	3 cut(s)	531, 720, 906
TscAI	CASTG	1 cut(s)	775
TseI	GCWGC	4 cut(s)	335, 371, 773, 835
TspDTI	ATGAA	4 cut(s)	17, 35, 39, 240
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	1 cut(s)	775
Tth111I	GACNNNGTC	1 cut(s)	821
Van91I	CCANNNNNTGG	1 cut(s)	881
VpaK11BI	GGWCC	1 cut(s)	872
XapI	RAATTY	3 cut(s)	4, 555, 898
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 775
XmaI	CCCGGG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.