Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360061.1

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Forward (+)

3 .. 779

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgggcacagtacctgcccgggcgctgtacatggcggcgcttgagatcaccaagagtaatgtgggcgctgccaccgttaggttagggttttcggagtcgtccgctgccgcaattgccaatgcggttgcagggttgagtgctgcgatggctgctcagcttgtgtggactccaattgatgttgtgagtcagagactgatggtgcaaggcggtgtgaatccgaatccgaatgccaagtttcctaaagcgtcttcttgtaaatatgttaatgggtatgatgctttcaggaaaattcttcggagtgatgggccgagggggttgtatagagggttcgggatttcgattttgacatatgcaccatccaatgcggtttggtgggcatcatactctgtggctcagaggatggtttggaggggagttgggtattattcttgtaagagcaatgaggatggggttaacacgtataggcctgattcgaagacaataatggcagttcagggagccagtgcagccatggcgggtggcgtgtcagctttgatcacaatgccactcgacacggtcaagacgaggctgcaagttctggatggggatgacaatggccggcggggaccaggcattgggcagactgttcggaatttggttaaagaaggcgggtggatggcttgttacagaggattggggccaaggtgggcctcaatgtcgatttctgcaaccaccatgatcaccacctatgagtttctgaaacggctctccactaagaatcaagaggttttgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

258

Amino Acids

27.61

Weight (kDa)

9.86

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	9 cut(s)	35, 102, 108, 122, 207, 365, 515, 601, 648
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	2 cut(s)	288, 631
AfaI	GTAC	2 cut(s)	12, 29
AfiI	CCNNNNNNNGG	2 cut(s)	78, 614
AflIII	ACRYGT	1 cut(s)	456
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	2 cut(s)	157, 530
AluI	AGCT	2 cut(s)	157, 530
Alw26I	GTCTC	1 cut(s)	184
AlwNI	CAGNNNCTG	2 cut(s)	14, 193
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	5 cut(s)	305, 464, 595, 677, 687
ApeKI	GCWGC	6 cut(s)	68, 104, 140, 149, 506, 568
ApoI	RAATTY	2 cut(s)	288, 631
AspLEI	GCGC	3 cut(s)	25, 40, 68
AspS9I	GGNCC	4 cut(s)	305, 605, 677, 687
AsuC2I	CCSGG	2 cut(s)	19, 20
AsuHPI	GGTGA	2 cut(s)	40, 712
AsuII	TTCGAA	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	240, 482
BbvI	GCAGC	6 cut(s)	55, 91, 127, 136, 518, 555
BccI	CCATC	8 cut(s)	139, 190, 296, 364, 394, 440, 575, 649
BceAI	ACGGC	1 cut(s)	758
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	2 cut(s)	534, 717
BcnI	CCSGG	2 cut(s)	19, 20
BcoDI	GTCTC	1 cut(s)	184
BfoI	RGCGCY	3 cut(s)	26, 41, 69
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	8 cut(s)	36, 69, 105, 108, 141, 150, 507, 569
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	8 cut(s)	37, 70, 106, 109, 142, 151, 508, 570
Bme1390I	CCNGG	3 cut(s)	19, 20, 609
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	4 cut(s)	305, 605, 677, 687
BmiI	GGNNCC	3 cut(s)	499, 606, 678
BmrFI	CCNGG	3 cut(s)	19, 20, 609
BmsI	GCATC	2 cut(s)	265, 386
BpiI	GAAGAC	2 cut(s)	240, 482
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	19, 20
BsaAI	YACGTR	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	18, 308, 510, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 614
Bse118I	RCCGGY	1 cut(s)	597
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	18, 308, 510, 680
BseGI	GGATG	6 cut(s)	356, 405, 451, 586, 592, 660
BseLI	CCNNNNNNNGG	2 cut(s)	78, 614
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	167, 407
BseNI	ACTGG	1 cut(s)	501
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	6 cut(s)	55, 91, 127, 136, 518, 555
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	5 cut(s)	307, 466, 597, 679, 689
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	19, 598
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	78, 614
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	618
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	5 cut(s)	307, 466, 597, 679, 689
BsoBI	CYCGRG	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	45, 534, 717
Bsp1720I	GCTNAGC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	9 cut(s)	35, 102, 108, 122, 207, 365, 515, 601, 648
BspANI	GGCC	5 cut(s)	307, 466, 597, 679, 689
BspCNI	CTCAG	2 cut(s)	166, 406
BspLI	GGNNCC	3 cut(s)	499, 606, 678
BspMI	ACCTGC	1 cut(s)	22
BspT104I	TTCGAA	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	501
BssAI	RCCGGY	1 cut(s)	597
BssECI	CCNNGG	4 cut(s)	18, 308, 510, 680
BssMI	GATC	3 cut(s)	45, 534, 717
BssT1I	CCWWGG	2 cut(s)	510, 680
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	4 cut(s)	10, 76, 556, 625
BstAUI	TGTACA	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	153, 393, 753
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	6 cut(s)	356, 405, 451, 586, 592, 660
BstH2I	RGCGCY	3 cut(s)	26, 41, 69
BstHHI	GCGC	3 cut(s)	25, 40, 68
BstKTI	GATC	3 cut(s)	48, 537, 720
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	45, 534, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 146, 149, 506, 512
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	3 cut(s)	17, 18, 607
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	6 cut(s)	55, 91, 127, 136, 518, 555
BstV2I	GAAGAC	2 cut(s)	240, 482
BsuRI	GGCC	5 cut(s)	307, 466, 597, 679, 689
BtgI	CCRYGG	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	6 cut(s)	356, 405, 451, 586, 592, 660
BtsIMutI	CAGTG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	599
CaiI	CAGNNNCTG	2 cut(s)	14, 193
CfoI	GCGC	3 cut(s)	25, 40, 68
Cfr10I	RCCGGY	1 cut(s)	597
Cfr13I	GGNCC	4 cut(s)	305, 605, 677, 687
Cfr9I	CCCGGG	1 cut(s)	18
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	11, 28
CviAII	CATG	4 cut(s)	31, 511, 715, 774
CviQI	GTAC	2 cut(s)	11, 28
DdeI	CTNAG	3 cut(s)	153, 393, 753
DpnI	GATC	3 cut(s)	47, 536, 719
DpnII	GATC	3 cut(s)	45, 534, 717
EaeI	YGGCCR	1 cut(s)	595
Eco130I	CCWWGG	2 cut(s)	510, 680
Eco147I	AGGCCT	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	510, 680
ErhI	CCWWGG	2 cut(s)	510, 680
FaeI	CATG	4 cut(s)	34, 514, 718, 777
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	4 cut(s)	30, 510, 714, 773
FauI	CCCGC	3 cut(s)	508, 594, 641
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	2 cut(s)	534, 717
Fnu4HI	GCNGC	8 cut(s)	36, 69, 105, 108, 141, 150, 507, 569
FokI	GGATG	6 cut(s)	343, 412, 458, 593, 599, 667
Fsp4HI	GCNGC	8 cut(s)	36, 69, 105, 108, 141, 150, 507, 569
GlaI	GCGC	3 cut(s)	24, 39, 67
GluI	GCNGC	8 cut(s)	36, 69, 105, 108, 141, 150, 507, 569
HaeII	RGCGCY	3 cut(s)	26, 41, 69
HaeIII	GGCC	5 cut(s)	307, 466, 597, 679, 689
HapII	CCGG	2 cut(s)	19, 598
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	3 cut(s)	25, 40, 68
Hin1II	CATG	4 cut(s)	34, 514, 718, 777
Hin6I	GCGC	3 cut(s)	23, 38, 66
HinP1I	GCGC	3 cut(s)	23, 38, 66
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	7 cut(s)	95, 166, 184, 214, 220, 470, 757
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	19, 598
HphI	GGTGA	2 cut(s)	40, 712
Hpy166II	GTNNAC	2 cut(s)	165, 454
Hpy188I	TCNGA	8 cut(s)	94, 189, 219, 225, 297, 396, 630, 738
Hpy188III	TCNNGA	5 cut(s)	283, 331, 559, 578, 761
Hpy8I	GTNNAC	2 cut(s)	165, 454
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	4 cut(s)	10, 76, 556, 625
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	6 cut(s)	128, 202, 353, 506, 571, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 146, 149, 506, 512
HpyF3I	CTNAG	3 cut(s)	153, 393, 753
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	4 cut(s)	34, 514, 718, 777
HspAI	GCGC	3 cut(s)	23, 38, 66
KroI	GCCGGC	1 cut(s)	597
KroNI	GCCGGC	1 cut(s)	599
Ksp22I	TGATCA	2 cut(s)	534, 717
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	45, 534, 717
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	6 cut(s)	55, 91, 127, 136, 518, 555
LweI	GCATC	2 cut(s)	265, 386
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	3 cut(s)	47, 536, 719
MboI	GATC	3 cut(s)	45, 534, 717
MboII	GAAGA	3 cut(s)	240, 284, 487
MfeI	CAATTG	2 cut(s)	111, 171
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	111, 171, 288, 631
MlyI	GAGTC	3 cut(s)	104, 160, 193
MnlI	CCTC	9 cut(s)	303, 317, 390, 402, 436, 558, 662, 700, 757
MroNI	GCCGGC	1 cut(s)	597
MseI	TTAA	3 cut(s)	264, 453, 639
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	19, 598
MspR9I	CCNGG	3 cut(s)	19, 20, 609
MunI	CAATTG	2 cut(s)	111, 171
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	5 cut(s)	113, 146, 149, 506, 512
NaeI	GCCGGC	1 cut(s)	599
NciI	CCSGG	2 cut(s)	19, 20
NcoI	CCATGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	45, 534, 717
NgoMIV	GCCGGC	1 cut(s)	597
NlaIII	CATG	4 cut(s)	34, 514, 718, 777
NlaIV	GGNNCC	3 cut(s)	499, 606, 678
NmeAIII	GCCGAG	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	560
PctI	GAATGC	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	599
PfeI	GAWTC	4 cut(s)	214, 220, 470, 757
PflFI	GACNNNGTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	8 cut(s)	37, 70, 106, 109, 142, 151, 508, 570
PleI	GAGTC	3 cut(s)	103, 160, 192
PpsI	GAGTC	3 cut(s)	103, 160, 192
Ppu21I	YACGTR	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	3 cut(s)	499, 606, 678
PspPI	GGNCC	4 cut(s)	305, 605, 677, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	311, 343
PstNI	CAGNNNCTG	2 cut(s)	14, 193
PsyI	GACNNNGTC	1 cut(s)	554
RsaI	GTAC	2 cut(s)	12, 29
RsaNI	GTAC	2 cut(s)	11, 28
SaqAI	TTAA	3 cut(s)	264, 453, 639
SatI	GCNGC	8 cut(s)	36, 69, 105, 108, 141, 150, 507, 569
Sau3AI	GATC	3 cut(s)	45, 534, 717
Sau96I	GGNCC	4 cut(s)	305, 605, 677, 687
SchI	GAGTC	3 cut(s)	104, 160, 193
ScrFI	CCNGG	3 cut(s)	19, 20, 609
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	16, 83, 159, 461, 532, 686, 728, 768
SfaNI	GCATC	2 cut(s)	265, 386
SfuI	TTCGAA	1 cut(s)	473
SinI	GGWCC	1 cut(s)	605
SmaI	CCCGGG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SrfI	GCCCGGGC	1 cut(s)	20
Sse9I	AATT	4 cut(s)	111, 171, 288, 631
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	9 cut(s)	35, 102, 108, 122, 207, 365, 515, 601, 648
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	3 cut(s)	17, 18, 607
StyI	CCWWGG	2 cut(s)	510, 680
TaaI	ACNGT	4 cut(s)	10, 76, 556, 625
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	4 cut(s)	338, 473, 549, 698
TasI	AATT	4 cut(s)	111, 171, 288, 631
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	38, 110
TfiI	GAWTC	4 cut(s)	214, 220, 470, 757
Tru1I	TTAA	3 cut(s)	264, 453, 639
Tru9I	TTAA	3 cut(s)	264, 453, 639
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	6 cut(s)	68, 104, 140, 149, 506, 568
TspMI	CCCGGG	1 cut(s)	18
TspRI	CASTG	1 cut(s)	508
Tth111I	GACNNNGTC	1 cut(s)	554
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	2 cut(s)	288, 631
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 508
XmaI	CCCGGG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.