Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

3134500 .. 3136991

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAATTTGAGCACTGCCGAGGAAGAATCGGCGCAAGAAATCCATATTCCCGCTGAAATTGATTGGCAAATGCTTGATAAATCCAAGTTCTTCTTCCTCGGAGCAGCTCTTTTTTCGGGTGTATCGGCGACTCTTTACCCTGTTGTGGTGTTGAAAACCCGCCAACAAGTAGCTCAATCCCAAGTTTCTTGCCTCAAAACTGCGATTTCAATGGTTAGGCACGAGGGTTTTAGGGCATTGTACAGAGGATTTGGGACTTCTTTGATGGGTACAATACCTGCCCGGGCGCTGTACATGGCAGCGCTTGAGGTCACTAAGAGTAAAGTCGGAACTGCCACGATTAGGTTAGGGTTTTCAGAGTCCACAGCAGCCGCCATTGCCAATGCAGCTGCAGGGTTGAGTGCGGCAATGGCTGCACAGATTGTGTGGACTCCAGTTGATGTTGTGAGTCAGAGACTCATGGTGCAAGGTGGTGTGAAATCAAGTTCCAAATATCCTAATGCAGCTGATTGTAAATATGTTAATGGGATCGATGCATTCAGGAAAATTATTAAGACGGATGGACCAAGAGGATTGTATAGAGGGTTTGGGATATCTATTTTGACATATGCACCATCCAATGCAGTTTGGTGGGCATCTTACTCTGTTGCTCAAAGAATGGTTTGGGGTGGAGTTGGGTATCATTTTTGTAAGAAAAGTGATGAAAGCAATGAGGATGGGGTTACCACATATACACCAGATTCGAAAACAATAATGGCAGTTCAGGGAGTCAGTGCAGCCATGGCTGGCGGCATGTCAGCCCTAATCACAATGCCCCTCGATACAGTTAAGACAAGGTTGCAAGTTTTGGATGGGGAGGACAATGGCCGGCGTGGACCAACAATCGGACAGACTGTTCGGAATCTGGTTAGGGAAGGTGGATGGACAGCTTGTTACAGAGGATTGGGGCCGCGGTGGGCTTCAATGTCGATTTCTGCAACCACAATGATCACCACCTATGAGTTTCTCAAACGGCTCTCCACAAAGAACCAAGAGGTTTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

349

Amino Acids

37.58

Weight (kDa)

9.42

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccII	CGCG	1 cut(s)	952
AciI	CCGC	7 cut(s)	51, 160, 372, 404, 789, 950, 952
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	3 cut(s)	242, 271, 293
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	145, 342, 884
AgsI	TTSAA	3 cut(s)	154, 210, 963
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AloI	GAACNNNNNNTCC	2 cut(s)	879, 911
AluBI	AGCT	5 cut(s)	107, 173, 389, 506, 929
AluI	AGCT	5 cut(s)	107, 173, 389, 506, 929
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	2 cut(s)	865, 947
ApeKI	GCWGC	8 cut(s)	104, 299, 368, 386, 389, 413, 503, 776
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	879, 911
AspLEI	GCGC	3 cut(s)	34, 289, 304
AspS9I	GGNCC	3 cut(s)	563, 875, 947
AsuC2I	CCSGG	2 cut(s)	283, 284
AsuHPI	GGTGA	1 cut(s)	982
AsuII	TTCGAA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	2 cut(s)	563, 875
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	8 cut(s)	116, 311, 376, 380, 398, 400, 515, 788
BccI	CCATC	6 cut(s)	259, 554, 622, 710, 845, 915
BceAI	ACGGC	1 cut(s)	1028
BclI	TGATCA	1 cut(s)	987
BcnI	CCSGG	2 cut(s)	283, 284
BcoDI	GTCTC	1 cut(s)	448
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	290, 305
BfuAI	ACCTGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	283, 284
Bme18I	GGWCC	2 cut(s)	563, 875
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	3 cut(s)	563, 875, 947
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	2 cut(s)	283, 284
BmsI	GCATC	2 cut(s)	523, 644
BpmI	CTGGAG	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	283, 284
Bsa29I	ATCGAT	1 cut(s)	531
BsaJI	CCNNGG	5 cut(s)	18, 97, 282, 780, 950
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 342, 884
Bse118I	RCCGGY	1 cut(s)	867
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	3 cut(s)	375, 414, 715
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	5 cut(s)	18, 97, 282, 780, 950
BseGI	GGATG	5 cut(s)	565, 614, 721, 856, 926
BseLI	CCNNNNNNNGG	3 cut(s)	145, 342, 884
BseMI	GCAATG	3 cut(s)	375, 414, 715
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	8 cut(s)	116, 311, 376, 380, 398, 400, 515, 788
BsgI	GTGCAG	2 cut(s)	399, 795
Bsh1236I	CGCG	1 cut(s)	952
BshFI	GGCC	2 cut(s)	867, 949
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	283, 868
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	145, 342, 884
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	867, 949
BsoBI	CYCGRG	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp1407I	TGTACA	2 cut(s)	240, 291
Bsp143I	GATC	2 cut(s)	528, 987
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	7 cut(s)	51, 160, 372, 404, 789, 950, 952
BspANI	GGCC	2 cut(s)	867, 949
BspDI	ATCGAT	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	952
BspLI	GGNNCC	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	536
BspT104I	TTCGAA	1 cut(s)	743
BsrDI	GCAATG	3 cut(s)	375, 414, 715
BsrFI	RCCGGY	1 cut(s)	867
BsrGI	TGTACA	2 cut(s)	240, 291
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	867
BssECI	CCNNGG	5 cut(s)	18, 97, 282, 780, 950
BssMI	GATC	2 cut(s)	528, 987
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	826, 895
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	2 cut(s)	240, 291
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	787, 869
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	2 cut(s)	780, 950
BstEII	GGTNACC	1 cut(s)	721
BstF5I	GGATG	5 cut(s)	565, 614, 721, 856, 926
BstFNI	CGCG	1 cut(s)	952
BstH2I	RGCGCY	2 cut(s)	290, 305
BstHHI	GCGC	3 cut(s)	34, 289, 304
BstKTI	GATC	2 cut(s)	531, 990
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	2 cut(s)	528, 987
BstMWI	GCNNNNNNNGC	5 cut(s)	377, 386, 410, 413, 782
BstNSI	RCATGY	1 cut(s)	796
BstPI	GGTNACC	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	281, 282
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	952
BstV1I	GCAGC	8 cut(s)	116, 311, 376, 380, 398, 400, 515, 788
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	867, 949
BsuTUI	ATCGAT	1 cut(s)	531
BtgI	CCRYGG	2 cut(s)	780, 950
BtsCI	GGATG	5 cut(s)	565, 614, 721, 856, 926
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 778
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	787, 869
CfoI	GCGC	3 cut(s)	34, 289, 304
Cfr10I	RCCGGY	1 cut(s)	867
Cfr13I	GGNCC	3 cut(s)	563, 875, 947
Cfr42I	CCGCGG	1 cut(s)	953
Cfr9I	CCCGGG	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	3 cut(s)	241, 270, 292
CviAII	CATG	5 cut(s)	295, 460, 781, 793, 1044
CviQI	GTAC	3 cut(s)	241, 270, 292
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	530, 989
DpnII	GATC	2 cut(s)	528, 987
EaeI	YGGCCR	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	2 cut(s)	563, 875
Eco47III	AGCGCT	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	721
EcoO65I	GGTNACC	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	780
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	5 cut(s)	298, 463, 784, 796, 1047
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	5 cut(s)	294, 459, 780, 792, 1043
FauI	CCCGC	2 cut(s)	58, 167
FauNDI	CATATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	987
FokI	GGATG	5 cut(s)	572, 601, 728, 863, 933
GlaI	GCGC	3 cut(s)	33, 288, 303
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	2 cut(s)	290, 305
HaeIII	GGCC	2 cut(s)	867, 949
HapII	CCGG	2 cut(s)	283, 868
HhaI	GCGC	3 cut(s)	34, 289, 304
Hin1II	CATG	5 cut(s)	298, 463, 784, 796, 1047
Hin6I	GCGC	3 cut(s)	32, 287, 302
HinP1I	GCGC	3 cut(s)	32, 287, 302
HinfI	GANTC	9 cut(s)	26, 130, 359, 430, 448, 456, 740, 768, 901
HpaII	CCGG	2 cut(s)	283, 868
HphI	GGTGA	1 cut(s)	982
Hpy166II	GTNNAC	3 cut(s)	363, 429, 875
Hpy188I	TCNGA	6 cut(s)	101, 329, 358, 453, 887, 900
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	3 cut(s)	363, 429, 875
HpyAV	CCTTC	1 cut(s)	908
HpyCH4III	ACNGT	2 cut(s)	826, 895
HpyF10VI	GCNNNNNNNGC	5 cut(s)	377, 386, 410, 413, 782
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	298, 463, 784, 796, 1047
HspAI	GCGC	3 cut(s)	32, 287, 302
KroI	GCCGGC	1 cut(s)	867
KroNI	GCCGGC	1 cut(s)	869
Ksp22I	TGATCA	1 cut(s)	987
KspI	CCGCGG	1 cut(s)	953
Kzo9I	GATC	2 cut(s)	528, 987
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	8 cut(s)	116, 311, 376, 380, 398, 400, 515, 788
LweI	GCATC	2 cut(s)	523, 644
MaeIII	GTNAC	3 cut(s)	310, 721, 932
MalI	GATC	2 cut(s)	530, 989
MboI	GATC	2 cut(s)	528, 987
MboII	GAAGA	3 cut(s)	35, 82, 85
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	4, 57, 546
MlyI	GAGTC	6 cut(s)	124, 368, 424, 450, 457, 777
MmeI	TCCRAC	1 cut(s)	307
Mph1103I	ATGCAT	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	867
MseI	TTAA	3 cut(s)	522, 552, 828
MspA1I	CMGCKG	4 cut(s)	53, 389, 506, 952
MspI	CCGG	2 cut(s)	283, 868
MspR9I	CCNGG	2 cut(s)	283, 284
Mva1269I	GAATGC	1 cut(s)	536
MvnI	CGCG	1 cut(s)	952
MwoI	GCNNNNNNNGC	5 cut(s)	377, 386, 410, 413, 782
NaeI	GCCGGC	1 cut(s)	869
NciI	CCSGG	2 cut(s)	283, 284
NcoI	CCATGG	1 cut(s)	780
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	2 cut(s)	528, 987
NgoMIV	GCCGGC	1 cut(s)	867
NlaIII	CATG	5 cut(s)	298, 463, 784, 796, 1047
NlaIV	GGNNCC	1 cut(s)	948
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	796
NspV	TTCGAA	1 cut(s)	743
PctI	GAATGC	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	869
PfeI	GAWTC	3 cut(s)	26, 740, 901
PleI	GAGTC	6 cut(s)	124, 367, 424, 450, 456, 776
PpsI	GAGTC	6 cut(s)	124, 367, 424, 450, 456, 776
PspEI	GGTNACC	1 cut(s)	721
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	3 cut(s)	563, 875, 947
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	2 cut(s)	389, 506
RsaI	GTAC	3 cut(s)	242, 271, 293
RsaNI	GTAC	3 cut(s)	241, 270, 292
SacII	CCGCGG	1 cut(s)	953
SaqAI	TTAA	3 cut(s)	522, 552, 828
Sau3AI	GATC	2 cut(s)	528, 987
Sau96I	GGNCC	3 cut(s)	563, 875, 947
SchI	GAGTC	6 cut(s)	124, 368, 424, 450, 457, 777
ScrFI	CCNGG	2 cut(s)	283, 284
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	523, 644
SfcI	CTRYAG	1 cut(s)	390
Sfr303I	CCGCGG	1 cut(s)	953
SfuI	TTCGAA	1 cut(s)	743
SgrBI	CCGCGG	1 cut(s)	953
SinI	GGWCC	2 cut(s)	563, 875
SmaI	CCCGGG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SrfI	GCCCGGGC	1 cut(s)	284
Sse9I	AATT	3 cut(s)	4, 57, 546
SsiI	CCGC	7 cut(s)	51, 160, 372, 404, 789, 950, 952
StyD4I	CCNGG	2 cut(s)	281, 282
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	2 cut(s)	826, 895
TaqI	TCGA	4 cut(s)	531, 743, 819, 968
TasI	AATT	3 cut(s)	4, 57, 546
TatI	WGTACW	2 cut(s)	240, 291
TauI	GCSGC	4 cut(s)	374, 407, 792, 952
TfiI	GAWTC	3 cut(s)	26, 740, 901
Tru1I	TTAA	3 cut(s)	522, 552, 828
Tru9I	TTAA	3 cut(s)	522, 552, 828
TscAI	CASTG	2 cut(s)	19, 778
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	8 cut(s)	104, 299, 368, 386, 389, 413, 503, 776
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	17, 717
TspGWI	ACGGA	1 cut(s)	572
TspMI	CCCGGG	1 cut(s)	282
TspRI	CASTG	2 cut(s)	19, 778
VpaK11BI	GGWCC	2 cut(s)	563, 875
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	796
XmaI	CCCGGG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.