Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Forward (+)

27088605 .. 27089642

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAATTTGAGAGCGGCGGAGAATGAATCGGCGAAGAAGGAGTTTCATATCCCGGCCGAAGTCGACTGGGAAATGCTTGATAAATCAAAGTTCTTTGTCCTTGGAGCGGTGATGTTTTCCGGCGTGTCGGCGTCTCTATACCCTGTGGTGGTTTTGAAAACACGGCAGCAAGTAGCTCTATCGCAACTCTCGTGTATCAAAACGGCGTTTTCGATCGTCAGGCATGAAGGTTTCCGGGCATTGTACAGAGGATTTGGGACCTCTTTGATGGGGACAATTCCTGCCCGGGCGCTCTACATGGCGGCGCTTGAGATCACCAAGAGTAATGTGGGCAATGCCACGGTTAGGTTAGGGTTTTCAGATTCATCTGCTGCCGCCATTGCCAATGCGGTTGGAGGGCTGACTTCTGCGATGGCTGCGCAGCTGGTGTGGACTCCGGTTGATGTTGTGAGTCAGAGGCTGATGGTGCAAGGCCGGGTGGATCCGGATGCCAAGTTCCCGAAAGCGTCTGCTTGTAAATATGCTAATGGATATGATGCGTTTAGGAAGATTCTGCACACTGATGGGCCGAGGGGGTTGTATAGAGGGTTTGGGATTTCGGTTTTGACATATGCACCATCCAATGCGGTGTGGTGGGCATCGTACTCTGTGGCGCAGAGGATGCTGTGGAGTGGAATTGGGAGTTATTGTGGCAAGATAGATGAGAATGGGGTTAACACGTATAGGCCTGATTCGAAGACAATAATGGCAGTTCAGGGAGCGAGTGCAGGCATGGCGGCGAGTGTGTCAGCTTTGATCACAACGCCACTCGACACGGTCAAGACAAGGCTGCAAGTTCTGGATGGGGATGACAATGGGCGGCGAGGACCAACCATTGTGCAGACTGCTCGGAATTTGGTTAAAGAAGGCGGGTGGATGGCTTGTTACAGAGGTTTGGGGCCAAGGTGGGCTTCCATGTCGCTCTCTGCAACCACCATGATCACCACCTATGAGTTAATCAAACGGATGTCCACCAAGAATCAAGAGGTTTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

346

Amino Acids

37.34

Weight (kDa)

9.63

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	38 - 110	3.5e-12	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 223	1.3e-19	Mitochondrial carrier protein
Mito_carr	PF00153	252 - 339	9.5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccBSI	CCGCTC	2 cut(s)	14, 107
AccI	GTMKAC	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	484
AclWI	GGATC	2 cut(s)	476, 489
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	4, 892
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	245, 644
AfiI	CCNNNNNNNGG	3 cut(s)	106, 148, 345
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	934, 966
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
AluBI	AGCT	3 cut(s)	176, 424, 791
AluI	AGCT	3 cut(s)	176, 424, 791
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	476, 489
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	5 cut(s)	54, 472, 566, 725, 938
ApeKI	GCWGC	5 cut(s)	166, 371, 416, 421, 829
ApoI	RAATTY	2 cut(s)	4, 892
AspLEI	GCGC	4 cut(s)	292, 307, 421, 655
AspS9I	GGNCC	4 cut(s)	258, 566, 866, 938
AsuC2I	CCSGG	5 cut(s)	53, 236, 286, 287, 476
AsuHPI	GGTGA	3 cut(s)	121, 307, 973
AsuII	TTCGAA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	258, 866
BamHI	GGATCC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	5 cut(s)	178, 358, 403, 433, 816
BccI	CCATC	7 cut(s)	262, 406, 457, 557, 625, 836, 910
BceAI	ACGGC	2 cut(s)	179, 219
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BclI	TGATCA	2 cut(s)	795, 978
BcnI	CCSGG	5 cut(s)	53, 236, 286, 287, 476
BcoDI	GTCTC	1 cut(s)	138
BfoI	RGCGCY	2 cut(s)	293, 308
Bme1390I	CCNGG	5 cut(s)	53, 236, 286, 287, 476
Bme18I	GGWCC	2 cut(s)	258, 866
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	258, 566, 866, 938
BmiI	GGNNCC	3 cut(s)	259, 483, 939
BmrFI	CCNGG	5 cut(s)	53, 236, 286, 287, 476
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	4 cut(s)	478, 526, 647, 651
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	5 cut(s)	53, 236, 286, 287, 476
BsaAI	YACGTR	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	100, 285, 339, 569, 941
BsaWI	WCCGGW	2 cut(s)	436, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 148, 345
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	2 cut(s)	340, 378
BseAI	TCCGGA	1 cut(s)	484
BseDI	CCNNGG	5 cut(s)	100, 285, 339, 569, 941
BseGI	GGATG	7 cut(s)	493, 617, 666, 847, 853, 921, 1011
BseLI	CCNNNNNNNGG	3 cut(s)	106, 148, 345
BseMI	GCAATG	2 cut(s)	340, 378
BseNI	ACTGG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	5 cut(s)	178, 358, 403, 433, 816
BsgI	GTGCAG	3 cut(s)	539, 786, 899
Bsh1285I	CGRYCG	2 cut(s)	57, 216
BshFI	GGCC	5 cut(s)	56, 474, 568, 727, 940
BsiEI	CGRYCG	2 cut(s)	57, 216
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	7 cut(s)	53, 120, 235, 286, 437, 475, 485
BslFI	GGGAC	2 cut(s)	271, 286
BslI	CCNNNNNNNGG	3 cut(s)	106, 148, 345
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	271, 286
BsnI	GGCC	5 cut(s)	56, 474, 568, 727, 940
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	734
Bsp13I	TCCGGA	1 cut(s)	484
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	213, 312, 481, 795, 978
BspANI	GGCC	5 cut(s)	56, 474, 568, 727, 940
BspEI	TCCGGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	259, 483, 939
BspPI	GGATC	2 cut(s)	476, 489
BspT104I	TTCGAA	1 cut(s)	734
BsrBI	CCGCTC	2 cut(s)	14, 107
BsrDI	GCAATG	2 cut(s)	340, 378
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	5 cut(s)	100, 285, 339, 569, 941
BssMI	GATC	5 cut(s)	213, 312, 481, 795, 978
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	100, 941
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	343, 817
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstAUI	TGTACA	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	769
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	7 cut(s)	493, 617, 666, 847, 853, 921, 1011
BstH2I	RGCGCY	2 cut(s)	293, 308
BstHHI	GCGC	4 cut(s)	292, 307, 421, 655
BstKTI	GATC	5 cut(s)	216, 315, 484, 798, 981
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	5 cut(s)	213, 312, 481, 795, 978
BstMCI	CGRYCG	2 cut(s)	57, 216
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 416, 466, 661, 773
BstSCI	CCNGG	5 cut(s)	51, 234, 284, 285, 474
BstV1I	GCAGC	5 cut(s)	178, 358, 403, 433, 816
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	56, 474, 568, 727, 940
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	7 cut(s)	493, 617, 666, 847, 853, 921, 1011
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	769
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	4 cut(s)	292, 307, 421, 655
Cfr13I	GGNCC	4 cut(s)	258, 566, 866, 938
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	2 cut(s)	120, 495
Csp6I	GTAC	2 cut(s)	244, 643
CviAII	CATG	5 cut(s)	224, 298, 772, 955, 976
CviQI	GTAC	2 cut(s)	244, 643
DpnI	GATC	5 cut(s)	215, 314, 483, 797, 980
DpnII	GATC	5 cut(s)	213, 312, 481, 795, 978
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	32
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	100, 941
Eco147I	AGGCCT	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	258, 866
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	100, 941
ErhI	CCWWGG	2 cut(s)	100, 941
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	5 cut(s)	227, 301, 775, 958, 979
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FaqI	GGGAC	2 cut(s)	271, 286
FatI	CATG	5 cut(s)	223, 297, 771, 954, 975
FauI	CCCGC	1 cut(s)	902
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	2 cut(s)	795, 978
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	7 cut(s)	500, 604, 673, 854, 860, 928, 1018
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	4 cut(s)	291, 306, 420, 654
HaeII	RGCGCY	2 cut(s)	293, 308
HaeIII	GGCC	5 cut(s)	56, 474, 568, 727, 940
HapII	CCGG	7 cut(s)	53, 120, 235, 286, 437, 475, 485
HgaI	GACGC	2 cut(s)	120, 495
HhaI	GCGC	4 cut(s)	292, 307, 421, 655
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	227, 301, 775, 958, 979
Hin6I	GCGC	4 cut(s)	290, 305, 419, 653
HinP1I	GCGC	4 cut(s)	290, 305, 419, 653
HincII	GTYRAC	2 cut(s)	64, 715
HindII	GTYRAC	2 cut(s)	64, 715
HinfI	GANTC	7 cut(s)	26, 362, 433, 451, 550, 731, 1018
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	7 cut(s)	53, 120, 235, 286, 437, 475, 485
HphI	GGTGA	3 cut(s)	121, 307, 973
Hpy166II	GTNNAC	4 cut(s)	64, 432, 715, 1011
Hpy188I	TCNGA	3 cut(s)	361, 456, 891
Hpy188III	TCNNGA	5 cut(s)	485, 499, 820, 839, 1022
Hpy8I	GTNNAC	4 cut(s)	64, 432, 715, 1011
HpyAV	CCTTC	3 cut(s)	31, 221, 899
HpyCH4III	ACNGT	2 cut(s)	343, 817
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	7 cut(s)	469, 556, 614, 767, 832, 880, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 416, 466, 661, 773
HpySE526I	ACGT	1 cut(s)	719
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	227, 301, 775, 958, 979
HspAI	GCGC	4 cut(s)	290, 305, 419, 653
Kpn2I	TCCGGA	1 cut(s)	484
Ksp22I	TGATCA	2 cut(s)	795, 978
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	213, 312, 481, 795, 978
LmnI	GCTCC	2 cut(s)	104, 758
Lsp1109I	GCAGC	5 cut(s)	178, 358, 403, 433, 816
LweI	GCATC	4 cut(s)	478, 526, 647, 651
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	5 cut(s)	215, 314, 483, 797, 980
MbiI	CCGCTC	2 cut(s)	14, 107
MboI	GATC	5 cut(s)	213, 312, 481, 795, 978
MboII	GAAGA	3 cut(s)	46, 559, 748
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	4 cut(s)	4, 276, 675, 892
MlyI	GAGTC	2 cut(s)	427, 460
MmeI	TCCRAC	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	3 cut(s)	714, 900, 995
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	7 cut(s)	53, 120, 235, 286, 437, 475, 485
MspR9I	CCNGG	5 cut(s)	53, 236, 286, 287, 476
MwoI	GCNNNNNNNGC	5 cut(s)	380, 416, 466, 661, 773
NciI	CCSGG	5 cut(s)	53, 236, 286, 287, 476
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	5 cut(s)	213, 312, 481, 795, 978
NlaIII	CATG	5 cut(s)	227, 301, 775, 958, 979
NlaIV	GGNNCC	3 cut(s)	259, 483, 939
NmeAIII	GCCGAG	1 cut(s)	594
NsbI	TGCGCA	1 cut(s)	420
NspV	TTCGAA	1 cut(s)	734
PceI	AGGCCT	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 209
PfeI	GAWTC	5 cut(s)	26, 362, 550, 731, 1018
PflFI	GACNNNGTC	1 cut(s)	815
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	2 cut(s)	427, 459
PpsI	GAGTC	2 cut(s)	427, 459
Ppu21I	YACGTR	1 cut(s)	720
PpuMI	RGGWCCY	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	259, 483, 939
PspPI	GGNCC	4 cut(s)	258, 566, 866, 938
PspPPI	RGGWCCY	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	815
PvuI	CGATCG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	245, 644
RsaNI	GTAC	2 cut(s)	244, 643
RseI	CAYNNNNRTG	1 cut(s)	561
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	714, 900, 995
Sau3AI	GATC	5 cut(s)	213, 312, 481, 795, 978
Sau96I	GGNCC	4 cut(s)	258, 566, 866, 938
SchI	GAGTC	2 cut(s)	427, 460
ScrFI	CCNGG	5 cut(s)	53, 236, 286, 287, 476
SfaNI	GCATC	4 cut(s)	478, 526, 647, 651
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	2 cut(s)	258, 866
SmaI	CCCGGG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SrfI	GCCCGGGC	1 cut(s)	287
Sse9I	AATT	4 cut(s)	4, 276, 675, 892
SseBI	AGGCCT	1 cut(s)	727
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	5 cut(s)	51, 234, 284, 285, 474
StyI	CCWWGG	2 cut(s)	100, 941
TaaI	ACNGT	2 cut(s)	343, 817
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	4 cut(s)	63, 212, 734, 810
TasI	AATT	4 cut(s)	4, 276, 675, 892
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	5 cut(s)	17, 305, 377, 779, 862
TfiI	GAWTC	5 cut(s)	26, 362, 550, 731, 1018
Tru1I	TTAA	3 cut(s)	714, 900, 995
Tru9I	TTAA	3 cut(s)	714, 900, 995
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	5 cut(s)	166, 371, 416, 421, 829
TspDTI	ATGAA	5 cut(s)	17, 35, 39, 240, 354
TspGWI	ACGGA	1 cut(s)	1018
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	1 cut(s)	815
VpaK11BI	GGWCC	2 cut(s)	258, 866
XapI	RAATTY	2 cut(s)	4, 892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmaI	CCCGGG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.