Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

1366005 .. 1367057

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGCTTAAGCACGGCCGAGGACGATTCGGCTTCGGAAATTCATATCCCAGCAGACATAGATTGGCATATGCTTGACAAGTCCAAGTTTTTCTTTCTGGGTGCTGCTTTGTTTTCTGGTGTTTCAGCTGCTCTGTATCCAATTGTGGTCTTAAAGACTCGCCAGCAGGTTTCCCCTGCTCAAATCTCTAGCTTCAACATGTCGTATTCCATCATGCGGCATGAGGGTCCTAGAGGGTTTTACCGAGGTTTTGGGACCTCTCTGATGGGTACAATTCCAGCTCGAGCTCTCTACATGACAGCTCTTGAAGTTACCAAGAGCAATGTTGGGACTGTGACTGTGAAATTGGGTTTTTCGGATACTACAGCAATGGCTATAGCTAATGCTGCTGCAGGGTTGAGTTCGGCTATGGCTGCGCAGTTGGTTTGGACCCCAATTGATGTTGTGAGCCAGAGACTCATGGTTCAGGGTTGCAGCTACAGCAACAAAAGCACCATCCCCAGTGCCAGTACATGTTCATATCAGTATAGGAATGGTTTTGATGCGTTTAGGAAAATTGTAGGTTCAGATGGGTTGAGAGGATTGTACAGGGGATTTGGGATTTCAATATTAACTTATGCACCGTCTAACGCGGTTTGGTGGGCATCTTACTCTGTGGCACACAGACTCATTTGGGGGGGTTTTGGTTGCTACATGTGCAAGAAAGATGAGAATGGCTTAGGCAATGGGTCGCCTAATCTAAAGCCTGATTGCAAGTCAATGTTGGCGGTTCAGGGGTTGAGTGCAGGCATGGCTAGTGGGGTTTCTGCTTTGATTACCATGCCTTTGGATACCATCAAGACAAGGATGCAAGTTTTGGATGGAGAAGAAAATGGTCATAGAAGACCATTAACAGTAATGCAGACTGTGAGAAATTTGGTTAGGGAAGGAGGGTTTGGTGCTTGTTACAGAGGACTAGGGCCAAGGTGGGCTTCAATGGCTATGTCTGCCACGACCATGGTCACTACCTATGAGTTCCTCAAACGGATGTCGACTAAGAACCAAGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

351

Amino Acids

37.83

Weight (kDa)

9.42

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 109	6.8e-14	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 225	1.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	258 - 346	2.8e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	1031
AccII	CGCG	1 cut(s)	632
AciI	CCGC	3 cut(s)	217, 632, 767
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	39, 913
AfaI	GTAC	3 cut(s)	271, 511, 587
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflII	CTTAAG	1 cut(s)	7
AflIII	ACRYGT	3 cut(s)	198, 512, 693
AgsI	TTSAA	4 cut(s)	196, 308, 606, 975
AjuI	GAANNNNNNNTTGG	4 cut(s)	918, 950, 955, 987
AluBI	AGCT	9 cut(s)	6, 128, 192, 281, 287, 302, 380, 477, 1050
AluI	AGCT	9 cut(s)	6, 128, 192, 281, 287, 302, 380, 477, 1050
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	2 cut(s)	15, 959
ApeKI	GCWGC	6 cut(s)	104, 128, 386, 389, 413, 474
ApoI	RAATTY	2 cut(s)	39, 913
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	4 cut(s)	227, 255, 429, 959
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	227, 255, 429
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	889
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	6 cut(s)	91, 115, 373, 376, 400, 486
BccI	CCATC	6 cut(s)	218, 259, 503, 563, 842, 854
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	3 cut(s)	147, 352, 823
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	4 cut(s)	189, 231, 795, 956
BfmI	CTRYAG	4 cut(s)	363, 375, 390, 478
BfrI	CTTAAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	3 cut(s)	147, 352, 823
BisI	GCNGC	7 cut(s)	105, 129, 218, 387, 390, 414, 475
BlsI	GCNGC	7 cut(s)	106, 130, 219, 388, 391, 415, 476
Bme18I	GGWCC	3 cut(s)	227, 255, 429
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	4 cut(s)	227, 255, 429, 959
BmiI	GGNNCC	3 cut(s)	228, 256, 431
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	532, 653, 837
BmuI	ACTGGG	1 cut(s)	495
BoxI	GACNNNNGTC	1 cut(s)	998
BpiI	GAAGAC	1 cut(s)	889
Bpu10I	CCTNAGC	1 cut(s)	718
BsaJI	CCNNGG	5 cut(s)	18, 244, 962, 996, 1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	501, 507
Bse3DI	GCAATG	3 cut(s)	328, 375, 730
BseDI	CCNNGG	5 cut(s)	18, 244, 962, 996, 1042
BseGI	GGATG	4 cut(s)	495, 852, 865, 1032
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	3 cut(s)	328, 375, 730
BseNI	ACTGG	2 cut(s)	501, 507
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	6 cut(s)	91, 115, 373, 376, 400, 486
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	632
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	17, 961
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	268, 343
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	2 cut(s)	268, 343
BsnI	GGCC	2 cut(s)	17, 961
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	585
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	3 cut(s)	217, 632, 767
BspANI	GGCC	2 cut(s)	17, 961
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	3 cut(s)	228, 256, 431
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	7
BsrDI	GCAATG	3 cut(s)	328, 375, 730
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	501, 507
BssECI	CCNNGG	5 cut(s)	18, 244, 962, 996, 1042
BssT1I	CCWWGG	3 cut(s)	962, 996, 1042
Bst4CI	ACNGT	5 cut(s)	334, 340, 624, 895, 907
BstAFI	CTTAAG	1 cut(s)	7
BstAUI	TGTACA	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	164, 787
BstDEI	CTNAG	2 cut(s)	718, 1035
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	4 cut(s)	495, 852, 865, 1032
BstFNI	CGCG	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	448
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	8 cut(s)	386, 413, 480, 489, 696, 791, 977, 986
BstNSI	RCATGY	3 cut(s)	202, 516, 697
BstPAI	GACNNNNGTC	1 cut(s)	998
BstSFI	CTRYAG	4 cut(s)	363, 375, 390, 478
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	6 cut(s)	91, 115, 373, 376, 400, 486
BstV2I	GAAGAC	1 cut(s)	889
BstXI	CCANNNNNNTGG	2 cut(s)	826, 997
BstZI	CGGCCG	1 cut(s)	15
BsuI	GTATCC	3 cut(s)	147, 352, 823
BsuRI	GGCC	2 cut(s)	17, 961
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	4 cut(s)	495, 852, 865, 1032
BtsIMutI	CAGTG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	164, 787
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	4 cut(s)	227, 255, 429, 959
Csp6I	GTAC	3 cut(s)	270, 510, 586
CviQI	GTAC	3 cut(s)	270, 510, 586
DdeI	CTNAG	2 cut(s)	718, 1035
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	287
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	962, 996, 1042
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	227, 255, 429
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	227, 255
EcoT14I	CCWWGG	3 cut(s)	962, 996, 1042
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	3 cut(s)	962, 996, 1042
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 955, 987
FaqI	GGGAC	2 cut(s)	268, 343
FauNDI	CATATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	1031
Fnu4HI	GCNGC	7 cut(s)	105, 129, 218, 387, 390, 414, 475
FokI	GGATG	4 cut(s)	482, 859, 872, 1039
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	7 cut(s)	105, 129, 218, 387, 390, 414, 475
FspBI	CTAG	4 cut(s)	189, 231, 795, 956
FspI	TGCGCA	1 cut(s)	417
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	7 cut(s)	105, 129, 218, 387, 390, 414, 475
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	17, 961
HhaI	GCGC	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	1032
HindII	GTYRAC	1 cut(s)	1032
HinfI	GANTC	4 cut(s)	26, 157, 456, 666
Hpy166II	GTNNAC	1 cut(s)	1032
Hpy188I	TCNGA	4 cut(s)	37, 264, 358, 568
Hpy188III	TCNNGA	2 cut(s)	305, 838
Hpy8I	GTNNAC	1 cut(s)	1032
HpyAV	CCTTC	1 cut(s)	920
HpyCH4III	ACNGT	5 cut(s)	334, 340, 624, 895, 907
HpyCH4V	TGCA	8 cut(s)	392, 474, 620, 699, 753, 785, 850, 901
HpyF10VI	GCNNNNNNNGC	8 cut(s)	386, 413, 480, 489, 696, 791, 977, 986
HpyF3I	CTNAG	2 cut(s)	718, 1035
HspAI	GCGC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	1047
Lsp1109I	GCAGC	6 cut(s)	91, 115, 373, 376, 400, 486
LweI	GCATC	3 cut(s)	532, 653, 837
MaeI	CTAG	4 cut(s)	189, 231, 795, 956
MaeIII	GTNAC	4 cut(s)	310, 334, 944, 1000
MboII	GAAGA	2 cut(s)	878, 894
MfeI	CAATTG	2 cut(s)	141, 435
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	7 cut(s)	39, 141, 273, 344, 435, 555, 913
MlyI	GAGTC	3 cut(s)	151, 450, 660
MnlI	CCTC	9 cut(s)	13, 217, 227, 239, 268, 572, 923, 944, 1028
MseI	TTAA	4 cut(s)	8, 152, 611, 890
MslI	CAYNNNNRTG	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	7
MunI	CAATTG	2 cut(s)	141, 435
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	8 cut(s)	386, 413, 480, 489, 696, 791, 977, 986
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	1 cut(s)	69
NlaIV	GGNNCC	3 cut(s)	228, 256, 431
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	334, 1000
NsbI	TGCGCA	1 cut(s)	417
NspI	RCATGY	3 cut(s)	202, 516, 697
PaeR7I	CTCGAG	1 cut(s)	282
PciI	ACATGT	3 cut(s)	198, 512, 693
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	7 cut(s)	106, 130, 219, 388, 391, 415, 476
PleI	GAGTC	3 cut(s)	151, 450, 660
PpsI	GAGTC	3 cut(s)	151, 450, 660
PpuMI	RGGWCCY	2 cut(s)	227, 255
PscI	ACATGT	3 cut(s)	198, 512, 693
PshAI	GACNNNNGTC	1 cut(s)	998
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	2 cut(s)	227, 255
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	228, 256, 431
PspPI	GGNCC	4 cut(s)	227, 255, 429, 959
PspPPI	RGGWCCY	2 cut(s)	227, 255
PspXI	VCTCGAGB	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	271, 511, 587
RsaNI	GTAC	3 cut(s)	270, 510, 586
RseI	CAYNNNNRTG	1 cut(s)	995
SacI	GAGCTC	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	1030
SaqAI	TTAA	4 cut(s)	8, 152, 611, 890
SatI	GCNGC	7 cut(s)	105, 129, 218, 387, 390, 414, 475
Sau96I	GGNCC	4 cut(s)	227, 255, 429, 959
SchI	GAGTC	3 cut(s)	151, 450, 660
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	3 cut(s)	532, 653, 837
SfcI	CTRYAG	4 cut(s)	363, 375, 390, 478
Sfr274I	CTCGAG	1 cut(s)	282
SinI	GGWCC	3 cut(s)	227, 255, 429
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	995
SmlI	CTYRAG	2 cut(s)	7, 282
SmoI	CTYRAG	2 cut(s)	7, 282
Sse9I	AATT	7 cut(s)	39, 141, 273, 344, 435, 555, 913
SsiI	CCGC	3 cut(s)	217, 632, 767
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	4 cut(s)	189, 231, 795, 956
SstI	GAGCTC	1 cut(s)	289
StyI	CCWWGG	3 cut(s)	962, 996, 1042
TaaI	ACNGT	5 cut(s)	334, 340, 624, 895, 907
TaqI	TCGA	2 cut(s)	283, 1031
TasI	AATT	7 cut(s)	39, 141, 273, 344, 435, 555, 913
TatI	WGTACW	2 cut(s)	509, 585
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	4 cut(s)	8, 152, 611, 890
Tru9I	TTAA	4 cut(s)	8, 152, 611, 890
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	2 cut(s)	334, 1000
TseI	GCWGC	6 cut(s)	104, 128, 386, 389, 413, 474
Tsp45I	GTSAC	2 cut(s)	334, 1000
TspDTI	ATGAA	2 cut(s)	32, 507
TspGWI	ACGGA	1 cut(s)	1039
TspRI	CASTG	1 cut(s)	508
Vha464I	CTTAAG	1 cut(s)	7
VpaK11BI	GGWCC	3 cut(s)	227, 255, 429
XapI	RAATTY	2 cut(s)	39, 913
XceI	RCATGY	3 cut(s)	202, 516, 697
XhoI	CTCGAG	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	1031
XspI	CTAG	4 cut(s)	189, 231, 795, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.