Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

35712871 .. 35714819

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G406900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGCTTGAGGGCGGCCGAGAAAGATTCGGCTTCAGAAATTCATATCCCAGCCGATATAGATTGGCATATGCTTGACAAGTCCAAGTTTTTCTTTCTGGGTGCTGCTTTGTTTTCGGGTGTTTCAGCTGCTCTTTATCCGATTGTGGTCTTAAAAACCCGTCAACAAGTTTCACCCACTCAAATTTCTTGCCTGAAGATGTCTTGTGCTATGATGCGCCATGAAGGTCCTAGAGGGTTTTACAGAGGTTTTGGTACCTCTCTCATGGGAACCATTCCTGCTAGAGCACTTTACATGACAGCGCTTGAAGTTACCAAGAGTAATGTTGGGACTGTAACTGTTAGATTAGGCTTTTCAGATACTACAGCAATGGCTATAGCTAATGCTGCTGCAGGGTTGAGCTCAGCCATGGCTGCCCAATTAGTTTGGACCCCAATTGATGTTGTGAGCCAGAGACTTATGGTTCAGGGCTGCAGCACCAGCAGCAAAAACATCCTCCCCAATGTGAGTTCCTATAAGTATAGCAATGGTCTTGATGCTTTTAGGAAAATTGTACATGCAGATGGGCTGAGAGGATTGTATAGGGGATTTGGGATATCAACACTGACTTATGCACCGTCGAATGCGGTTTGGTGGGCTTCGTACTCTGTTGCACATAGGCTCATTTGGGGTGGTTTTGGTTGCTATATGTGTAAGAAGGATGAGAGTGGCTCAGCCAATAGGCCTGATTGCAGGGCAATGCTGGCAGTGCAGGGGTTGAGCGCAGCCATGGCTAGTGGGGTTTCTGCTTTGATCACCATGCCACTGGATACCGTCAAGACCCGGCTGCAAGTTTTGGATGCAGAAGAAAATGGGCGAAGAAGACCACTGACCATACTGCAGACTGTGAGGAATTTGGTGAGGGAAGGTGGGTTTGCTGCTTGTTACAGAGGCCTAGGGCCTAGGTGGGCTTCAATGTCAATGTCTGCTACAACCATGGTCACTACCTATGAGTTTCTCAAGCGGATGTCGACTAAGAGCCAAGGGAGCTACCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

347

Amino Acids

37.52

Weight (kDa)

9.72

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	1010
AciI	CCGC	3 cut(s)	14, 626, 1003
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	3 cut(s)	39, 183, 892
AcuI	CTGAAG	2 cut(s)	18, 215
AfaI	GTAC	3 cut(s)	256, 555, 644
AfeI	AGCGCT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	308, 954
AluBI	AGCT	5 cut(s)	6, 128, 380, 402, 1029
AluI	AGCT	5 cut(s)	6, 128, 380, 402, 1029
Alw21I	GWGCWC	2 cut(s)	289, 404
Alw26I	GTCTC	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	4 cut(s)	15, 722, 931, 938
ApoI	RAATTY	3 cut(s)	39, 183, 892
Asp718I	GGTACC	1 cut(s)	254
AspA2I	CCTAGG	2 cut(s)	934, 941
AspLEI	GCGC	3 cut(s)	219, 304, 764
AspS9I	GGNCC	3 cut(s)	227, 429, 938
AsuC2I	CCSGG	1 cut(s)	823
AsuHPI	GGTGA	3 cut(s)	165, 787, 910
AvaII	GGWCC	2 cut(s)	227, 429
AvrII	CCTAGG	2 cut(s)	934, 941
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	868
Bbv12I	GWGCWC	2 cut(s)	289, 404
BccI	CCATC	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	802
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	5 cut(s)	231, 282, 774, 935, 942
BfmI	CTRYAG	5 cut(s)	363, 375, 390, 472, 878
BfoI	RGCGCY	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	802
BlnI	CCTAGG	2 cut(s)	934, 941
BlpI	GCTNAGC	2 cut(s)	403, 712
Bme1390I	CCNGG	1 cut(s)	823
Bme18I	GGWCC	2 cut(s)	227, 429
BmgT120I	GGNCC	3 cut(s)	227, 429, 938
BmiI	GGNNCC	3 cut(s)	256, 271, 431
BmrFI	CCNGG	1 cut(s)	823
BmsI	GCATC	3 cut(s)	204, 526, 829
BpiI	GAAGAC	1 cut(s)	868
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
Bpu1102I	GCTNAGC	2 cut(s)	403, 712
BpuEI	CTTGAG	2 cut(s)	28, 983
BpuMI	CCSGG	1 cut(s)	823
BsaJI	CCNNGG	6 cut(s)	408, 768, 934, 941, 975, 1021
Bse1I	ACTGG	1 cut(s)	810
Bse3DI	GCAATG	3 cut(s)	375, 532, 744
BseDI	CCNNGG	6 cut(s)	408, 768, 934, 941, 975, 1021
BseGI	GGATG	4 cut(s)	492, 706, 844, 1011
BseMI	GCAATG	3 cut(s)	375, 532, 744
BseMII	CTCAG	3 cut(s)	417, 560, 726
BseNI	ACTGG	1 cut(s)	810
BseX3I	CGGCCG	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	17, 724, 933, 940
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	289, 404
BsiSI	CCGG	1 cut(s)	823
BslFI	GGGAC	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	4 cut(s)	17, 724, 933, 940
Bsp1286I	GDGCHC	2 cut(s)	289, 404
Bsp1407I	TGTACA	1 cut(s)	553
Bsp143I	GATC	1 cut(s)	792
Bsp1720I	GCTNAGC	2 cut(s)	403, 712
Bsp19I	CCATGG	3 cut(s)	408, 768, 975
BspACI	CCGC	3 cut(s)	14, 626, 1003
BspANI	GGCC	4 cut(s)	17, 724, 933, 940
BspCNI	CTCAG	3 cut(s)	416, 561, 725
BspLI	GGNNCC	3 cut(s)	256, 271, 431
BspMAI	CTGCAG	3 cut(s)	394, 476, 882
BspT107I	GGYRCC	1 cut(s)	254
BsrDI	GCAATG	3 cut(s)	375, 532, 744
BsrGI	TGTACA	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	810
BssECI	CCNNGG	6 cut(s)	408, 768, 934, 941, 975, 1021
BssMI	GATC	1 cut(s)	792
BssT1I	CCWWGG	6 cut(s)	408, 768, 934, 941, 975, 1021
Bst4CI	ACNGT	5 cut(s)	334, 340, 618, 814, 886
BstAUI	TGTACA	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	4 cut(s)	403, 569, 712, 1014
BstDSI	CCRYGG	3 cut(s)	408, 768, 975
BstF5I	GGATG	4 cut(s)	492, 706, 844, 1011
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	3 cut(s)	219, 304, 764
BstKTI	GATC	1 cut(s)	795
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	792
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	8 cut(s)	386, 413, 480, 483, 743, 748, 770, 1026
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	821
BstSFI	CTRYAG	5 cut(s)	363, 375, 390, 472, 878
BstV2I	GAAGAC	1 cut(s)	868
BstXI	CCANNNNNNTGG	1 cut(s)	805
BstZI	CGGCCG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	4 cut(s)	17, 724, 933, 940
BtgI	CCRYGG	3 cut(s)	408, 768, 975
BtsCI	GGATG	4 cut(s)	492, 706, 844, 1011
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	4 cut(s)	602, 753, 803, 866
Cac8I	GCNNGC	1 cut(s)	744
CfoI	GCGC	3 cut(s)	219, 304, 764
Cfr13I	GGNCC	3 cut(s)	227, 429, 938
Csp6I	GTAC	3 cut(s)	255, 554, 643
CviAII	CATG	8 cut(s)	221, 265, 295, 409, 557, 769, 799, 976
CviQI	GTAC	3 cut(s)	255, 554, 643
DdeI	CTNAG	4 cut(s)	403, 569, 712, 1014
DpnI	GATC	1 cut(s)	794
DpnII	GATC	1 cut(s)	792
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	6 cut(s)	408, 768, 934, 941, 975, 1021
Eco147I	AGGCCT	2 cut(s)	724, 933
Eco24I	GRGCYC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	227, 429
Eco47III	AGCGCT	1 cut(s)	303
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	402
Eco57I	CTGAAG	2 cut(s)	18, 215
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	2 cut(s)	227, 938
EcoRV	GATATC	1 cut(s)	597
EcoT14I	CCWWGG	6 cut(s)	408, 768, 934, 941, 975, 1021
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	6 cut(s)	408, 768, 934, 941, 975, 1021
FaeI	CATG	8 cut(s)	224, 268, 298, 412, 560, 772, 802, 979
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	8 cut(s)	220, 264, 294, 408, 556, 768, 798, 975
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	1010
FokI	GGATG	4 cut(s)	479, 713, 851, 1018
FriOI	GRGCYC	1 cut(s)	404
FspBI	CTAG	5 cut(s)	231, 282, 774, 935, 942
GlaI	GCGC	3 cut(s)	218, 303, 763
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	17, 724, 933, 940
HapII	CCGG	1 cut(s)	823
HhaI	GCGC	3 cut(s)	219, 304, 764
Hin1II	CATG	8 cut(s)	224, 268, 298, 412, 560, 772, 802, 979
Hin6I	GCGC	3 cut(s)	217, 302, 762
HinP1I	GCGC	3 cut(s)	217, 302, 762
HincII	GTYRAC	2 cut(s)	164, 1011
HindII	GTYRAC	2 cut(s)	164, 1011
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	3 cut(s)	165, 787, 910
Hpy166II	GTNNAC	2 cut(s)	164, 1011
Hpy188I	TCNGA	3 cut(s)	37, 141, 358
Hpy188III	TCNNGA	3 cut(s)	533, 817, 1038
Hpy8I	GTNNAC	2 cut(s)	164, 1011
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	3 cut(s)	218, 691, 899
HpyCH4III	ACNGT	5 cut(s)	334, 340, 618, 814, 886
HpyF10VI	GCNNNNNNNGC	8 cut(s)	386, 413, 480, 483, 743, 748, 770, 1026
HpyF3I	CTNAG	4 cut(s)	403, 569, 712, 1014
Hsp92II	CATG	8 cut(s)	224, 268, 298, 412, 560, 772, 802, 979
HspAI	GCGC	3 cut(s)	217, 302, 762
KpnI	GGTACC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	1 cut(s)	792
LmnI	GCTCC	1 cut(s)	1026
LweI	GCATC	3 cut(s)	204, 526, 829
MaeI	CTAG	5 cut(s)	231, 282, 774, 935, 942
MaeIII	GTNAC	4 cut(s)	310, 334, 923, 979
MalI	GATC	1 cut(s)	794
MboI	GATC	1 cut(s)	792
MboII	GAAGA	4 cut(s)	208, 857, 870, 873
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	289, 404
MluCI	AATT	6 cut(s)	39, 183, 419, 435, 549, 892
MnlI	CCTC	9 cut(s)	3, 227, 239, 268, 506, 566, 882, 894, 923
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	1 cut(s)	823
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	628
MwoI	GCNNNNNNNGC	8 cut(s)	386, 413, 480, 483, 743, 748, 770, 1026
NciI	CCSGG	1 cut(s)	823
NcoI	CCATGG	3 cut(s)	408, 768, 975
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	1 cut(s)	792
NlaIII	CATG	8 cut(s)	224, 268, 298, 412, 560, 772, 802, 979
NlaIV	GGNNCC	3 cut(s)	256, 271, 431
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	979
NspI	RCATGY	1 cut(s)	560
PceI	AGGCCT	2 cut(s)	724, 933
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	256, 271, 431
PspPI	GGNCC	3 cut(s)	227, 429, 938
PspPPI	RGGWCCY	1 cut(s)	227
PstI	CTGCAG	3 cut(s)	394, 476, 882
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	256, 555, 644
RsaNI	GTAC	3 cut(s)	255, 554, 643
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	1009
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	792
Sau96I	GGNCC	3 cut(s)	227, 429, 938
ScrFI	CCNGG	1 cut(s)	823
SduI	GDGCHC	2 cut(s)	289, 404
SfaNI	GCATC	3 cut(s)	204, 526, 829
SfcI	CTRYAG	5 cut(s)	363, 375, 390, 472, 878
SinI	GGWCC	2 cut(s)	227, 429
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	2 cut(s)	7, 998
SmoI	CTYRAG	2 cut(s)	7, 998
Sse9I	AATT	6 cut(s)	39, 183, 419, 435, 549, 892
SseBI	AGGCCT	2 cut(s)	724, 933
SsiI	CCGC	3 cut(s)	14, 626, 1003
SspMI	CTAG	5 cut(s)	231, 282, 774, 935, 942
SstI	GAGCTC	1 cut(s)	404
StuI	AGGCCT	2 cut(s)	724, 933
StyD4I	CCNGG	1 cut(s)	821
StyI	CCWWGG	6 cut(s)	408, 768, 934, 941, 975, 1021
TaaI	ACNGT	5 cut(s)	334, 340, 618, 814, 886
TaqI	TCGA	2 cut(s)	620, 1010
TasI	AATT	6 cut(s)	39, 183, 419, 435, 549, 892
TatI	WGTACW	1 cut(s)	553
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	4 cut(s)	609, 753, 810, 873
TseFI	GTSAC	1 cut(s)	979
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	2 cut(s)	32, 237
TspRI	CASTG	4 cut(s)	609, 753, 810, 873
VpaK11BI	GGWCC	2 cut(s)	227, 429
XapI	RAATTY	3 cut(s)	39, 183, 892
XceI	RCATGY	1 cut(s)	560
XmaJI	CCTAGG	2 cut(s)	934, 941
XmiI	GTMKAC	1 cut(s)	1010
XspI	CTAG	5 cut(s)	231, 282, 774, 935, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.