Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Forward (+)

5487934 .. 5489940

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1069000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAGCTTGAGCGCGGCCGAGGACGATTCGGCTTCGGAAATTCACATCCCGGCTGATATAGATTGGCATATGCTTGACAAGTCCAAGTTTTTCTTTCTGGGTGCTGCTTTGTTTTCTGGTGTTTCAGGTGCTTTGTATCCAATTATAGTGTTAAAAACCCGCCAACAAGTTTCACCCACTCAGATTTCTTGCTTGAAGATGTCTTGTGCAATCATGCGCCACGAAGGTCCTAAAGGGTTTTACAGAGGTTTTGGGACCTCTCTGACGGGAACAATTCCGGCTCGAGCGCTTTACATGGCGGCGCTTGAAGTCACCAAGAGCAATGTTGGAACTGTGACGGTTAGATTAGGATTTTCGGATACTACAGCAATGGCAATAGCGAATGCTGCTGCAGGGTTGAGCTCAGCCATGGCGGCCCAATTAGTTTGGACCCCGGTGGATGTTGTGAGCCAGAGACTCATGGTTCAGGGCTGCACCAGTAGTACCAAACACATCCTCCCCAATGTGAGTTCTTATAAGTATAGAAATGGCCTTGATGCTTTTACGAAAATTGTTCATGCCGATGGATTGAGAGGATTGTACAGGGGATTTGGGATTTCGTCACTGACTTATGCACCTTCAAATGCGGTTTGGTGGACTTCTTACTCTGTTGCACACAGACTCATTTGGAGTAGTTTTGGTGGCTATATGTGTAAGAAAGATGAGAGTGGCTCAGGCAATGGGTCTAATTTGCGCCCCGATTGCAAGGCAATGCTGGCAGTGCAGGCGTTGAGTGCAGGCATGGCAAGTGGGGTTTCTGCTCTGATTACCATGCCGCTGGATACTGTCAAGACGCGGTTGCAAGTTCTGGATGCGGAAGAAAACGGGCATAGAAGACCGCTGACAATAATGCAGACGGTGAGAAATCTGGTGAGGGAAGGAGGGTTTGCTGCTTGTTACAGAGGGCTAGGGCCTAGGTGGGCTTCAATGGCAATGTCTTCCACAACCATGGTTACTACCTATGAGTTTCTCAAAAGAATGTCTGCCAAGAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

346

Amino Acids

37.23

Weight (kDa)

9.51

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	43 - 109	1.3e-11	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 223	1.7e-18	Mitochondrial carrier protein
Mito_carr	PF00153	254 - 343	1.5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccII	CGCG	2 cut(s)	14, 835
AciI	CCGC	9 cut(s)	14, 160, 299, 413, 626, 815, 835, 854, 878
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	39
AfaI	GTAC	2 cut(s)	484, 581
AfeI	AGCGCT	1 cut(s)	288
AgsI	TTSAA	4 cut(s)	196, 308, 621, 966
AluBI	AGCT	2 cut(s)	6, 402
AluI	AGCT	2 cut(s)	6, 402
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	4 cut(s)	15, 414, 529, 950
ApeKI	GCWGC	5 cut(s)	104, 386, 389, 471, 929
ApoI	RAATTY	1 cut(s)	39
AspA2I	CCTAGG	1 cut(s)	953
AspLEI	GCGC	5 cut(s)	14, 219, 289, 304, 735
AspS9I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
AsuC2I	CCSGG	2 cut(s)	50, 434
AsuHPI	GGTGA	4 cut(s)	165, 304, 910, 922
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	227, 255, 429
AvrII	CCTAGG	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	880, 969
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	5 cut(s)	91, 373, 376, 458, 916
BccI	CCATC	1 cut(s)	557
BciVI	GTATCC	3 cut(s)	147, 352, 814
BcnI	CCSGG	2 cut(s)	50, 434
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	2 cut(s)	947, 954
BfmI	CTRYAG	2 cut(s)	363, 390
BfoI	RGCGCY	2 cut(s)	290, 305
BfuI	GTATCC	3 cut(s)	147, 352, 814
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	9 cut(s)	15, 105, 300, 387, 390, 414, 472, 815, 930
BlnI	CCTAGG	1 cut(s)	953
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	9 cut(s)	16, 106, 301, 388, 391, 415, 473, 816, 931
Bme1390I	CCNGG	2 cut(s)	50, 434
Bme18I	GGWCC	3 cut(s)	227, 255, 429
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
BmiI	GGNNCC	2 cut(s)	256, 431
BmrFI	CCNGG	2 cut(s)	50, 434
BmsI	GCATC	2 cut(s)	526, 841
BpiI	GAAGAC	2 cut(s)	880, 969
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
Bpu10I	CCTNAGC	1 cut(s)	712
Bpu1102I	GCTNAGC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	28
BpuMI	CCSGG	2 cut(s)	50, 434
BsaJI	CCNNGG	5 cut(s)	18, 408, 432, 953, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	5 cut(s)	328, 375, 724, 756, 978
BseDI	CCNNGG	5 cut(s)	18, 408, 432, 953, 987
BseGI	GGATG	4 cut(s)	45, 445, 492, 856
BseMI	GCAATG	5 cut(s)	328, 375, 724, 756, 978
BseMII	CTCAG	3 cut(s)	194, 417, 726
BseNI	ACTGG	1 cut(s)	477
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	5 cut(s)	91, 373, 376, 458, 916
BsgI	GTGCAG	3 cut(s)	457, 782, 795
Bsh1236I	CGCG	2 cut(s)	14, 835
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	17, 416, 531, 952
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	50, 278, 434
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	17, 416, 531, 952
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	579
Bsp1720I	GCTNAGC	1 cut(s)	403
Bsp19I	CCATGG	2 cut(s)	408, 987
BspACI	CCGC	9 cut(s)	14, 160, 299, 413, 626, 815, 835, 854, 878
BspANI	GGCC	4 cut(s)	17, 416, 531, 952
BspCNI	CTCAG	3 cut(s)	193, 416, 725
BspFNI	CGCG	2 cut(s)	14, 835
BspLI	GGNNCC	2 cut(s)	256, 431
BspMAI	CTGCAG	1 cut(s)	394
BsrDI	GCAATG	5 cut(s)	328, 375, 724, 756, 978
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	5 cut(s)	18, 408, 432, 953, 987
BssT1I	CCWWGG	3 cut(s)	408, 953, 987
Bst4CI	ACNGT	4 cut(s)	334, 340, 826, 898
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	756, 765, 778
BstDEI	CTNAG	3 cut(s)	180, 403, 712
BstDSI	CCRYGG	2 cut(s)	408, 987
BstF5I	GGATG	4 cut(s)	45, 445, 492, 856
BstFNI	CGCG	2 cut(s)	14, 835
BstH2I	RGCGCY	2 cut(s)	290, 305
BstHHI	GCGC	5 cut(s)	14, 219, 289, 304, 735
BstMAI	GTCTC	1 cut(s)	448
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	9 cut(s)	386, 413, 741, 755, 760, 764, 773, 782, 968
BstSCI	CCNGG	2 cut(s)	48, 432
BstSFI	CTRYAG	2 cut(s)	363, 390
BstUI	CGCG	2 cut(s)	14, 835
BstV1I	GCAGC	5 cut(s)	91, 373, 376, 458, 916
BstV2I	GAAGAC	2 cut(s)	880, 969
BstXI	CCANNNNNNTGG	2 cut(s)	817, 988
BstZI	CGGCCG	1 cut(s)	15
BsuI	GTATCC	3 cut(s)	147, 352, 814
BsuRI	GGCC	4 cut(s)	17, 416, 531, 952
BtgI	CCRYGG	2 cut(s)	408, 987
BtsCI	GGATG	4 cut(s)	45, 445, 492, 856
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	602, 765
Cac8I	GCNNGC	3 cut(s)	756, 765, 778
CfoI	GCGC	5 cut(s)	14, 219, 289, 304, 735
Cfr13I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
CseI	GACGC	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	483, 580
CviAII	CATG	8 cut(s)	214, 295, 409, 460, 557, 781, 811, 988
CviQI	GTAC	2 cut(s)	483, 580
DdeI	CTNAG	3 cut(s)	180, 403, 712
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	408, 953, 987
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	3 cut(s)	227, 255, 429
Eco47III	AGCGCT	1 cut(s)	288
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	3 cut(s)	227, 255, 950
EcoT14I	CCWWGG	3 cut(s)	408, 953, 987
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	3 cut(s)	408, 953, 987
FaeI	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	8 cut(s)	213, 294, 408, 459, 556, 780, 810, 987
FauI	CCCGC	1 cut(s)	167
FauNDI	CATATG	1 cut(s)	69
Fnu4HI	GCNGC	9 cut(s)	15, 105, 300, 387, 390, 414, 472, 815, 930
FokI	GGATG	4 cut(s)	32, 452, 479, 863
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	9 cut(s)	15, 105, 300, 387, 390, 414, 472, 815, 930
FspBI	CTAG	2 cut(s)	947, 954
GlaI	GCGC	5 cut(s)	13, 218, 288, 303, 734
GluI	GCNGC	9 cut(s)	15, 105, 300, 387, 390, 414, 472, 815, 930
HaeII	RGCGCY	2 cut(s)	290, 305
HaeIII	GGCC	4 cut(s)	17, 416, 531, 952
HapII	CCGG	3 cut(s)	50, 278, 434
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	5 cut(s)	14, 219, 289, 304, 735
Hin1II	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
Hin6I	GCGC	5 cut(s)	12, 217, 287, 302, 733
HinP1I	GCGC	5 cut(s)	12, 217, 287, 302, 733
HinfI	GANTC	4 cut(s)	26, 456, 660, 1030
HpaII	CCGG	3 cut(s)	50, 278, 434
HphI	GGTGA	4 cut(s)	165, 304, 910, 922
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	5 cut(s)	37, 183, 264, 358, 804
Hpy188III	TCNNGA	2 cut(s)	829, 848
Hpy8I	GTNNAC	1 cut(s)	636
HpyAV	CCTTC	3 cut(s)	218, 627, 911
HpyCH4III	ACNGT	4 cut(s)	334, 340, 826, 898
HpyF10VI	GCNNNNNNNGC	9 cut(s)	386, 413, 741, 755, 760, 764, 773, 782, 968
HpyF3I	CTNAG	3 cut(s)	180, 403, 712
Hsp92II	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
HspAI	GCGC	5 cut(s)	12, 217, 287, 302, 733
Lsp1109I	GCAGC	5 cut(s)	91, 373, 376, 458, 916
LweI	GCATC	2 cut(s)	526, 841
MaeI	CTAG	2 cut(s)	947, 954
MaeIII	GTNAC	5 cut(s)	310, 334, 600, 935, 991
MboII	GAAGA	4 cut(s)	208, 869, 885, 969
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	6 cut(s)	39, 141, 273, 419, 549, 727
MlyI	GAGTC	2 cut(s)	450, 654
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	13, 239, 268, 506, 566, 906, 914, 935
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	2 cut(s)	561, 986
MspA1I	CMGCKG	2 cut(s)	817, 880
MspI	CCGG	3 cut(s)	50, 278, 434
MspR9I	CCNGG	2 cut(s)	50, 434
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	2 cut(s)	14, 835
MwoI	GCNNNNNNNGC	9 cut(s)	386, 413, 741, 755, 760, 764, 773, 782, 968
NciI	CCSGG	2 cut(s)	50, 434
NcoI	CCATGG	2 cut(s)	408, 987
NdeI	CATATG	1 cut(s)	69
NlaIII	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
NlaIV	GGNNCC	2 cut(s)	256, 431
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	3 cut(s)	310, 334, 600
PaeR7I	CTCGAG	1 cut(s)	282
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	26, 1030
PkrI	GCNGC	9 cut(s)	16, 106, 301, 388, 391, 415, 473, 816, 931
PleI	GAGTC	2 cut(s)	450, 654
PpsI	GAGTC	2 cut(s)	450, 654
PpuMI	RGGWCCY	2 cut(s)	227, 255
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	404
Psp5II	RGGWCCY	2 cut(s)	227, 255
PspN4I	GGNNCC	2 cut(s)	256, 431
PspPI	GGNCC	5 cut(s)	227, 255, 415, 429, 950
PspPPI	RGGWCCY	2 cut(s)	227, 255
PspXI	VCTCGAGB	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	484, 581
RsaNI	GTAC	2 cut(s)	483, 580
RseI	CAYNNNNRTG	2 cut(s)	561, 986
SacI	GAGCTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	9 cut(s)	15, 105, 300, 387, 390, 414, 472, 815, 930
Sau96I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
SchI	GAGTC	2 cut(s)	450, 654
ScrFI	CCNGG	2 cut(s)	50, 434
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	9 cut(s)	8, 130, 229, 250, 260, 404, 619, 959, 1001
SfaNI	GCATC	2 cut(s)	526, 841
SfcI	CTRYAG	2 cut(s)	363, 390
Sfr274I	CTCGAG	1 cut(s)	282
SinI	GGWCC	3 cut(s)	227, 255, 429
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	561, 986
SmlI	CTYRAG	2 cut(s)	7, 282
SmoI	CTYRAG	2 cut(s)	7, 282
Sse9I	AATT	6 cut(s)	39, 141, 273, 419, 549, 727
SsiI	CCGC	9 cut(s)	14, 160, 299, 413, 626, 815, 835, 854, 878
SspMI	CTAG	2 cut(s)	947, 954
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	48, 432
StyI	CCWWGG	3 cut(s)	408, 953, 987
TaaI	ACNGT	4 cut(s)	334, 340, 826, 898
TaqI	TCGA	1 cut(s)	283
TasI	AATT	6 cut(s)	39, 141, 273, 419, 549, 727
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	4 cut(s)	17, 302, 416, 817
TfiI	GAWTC	2 cut(s)	26, 1030
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	2 cut(s)	609, 765
TseFI	GTSAC	3 cut(s)	310, 334, 600
TseI	GCWGC	5 cut(s)	104, 386, 389, 471, 929
Tsp45I	GTSAC	3 cut(s)	310, 334, 600
TspDTI	ATGAA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	609, 765
VpaK11BI	GGWCC	3 cut(s)	227, 255, 429
XapI	RAATTY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	282
XmaJI	CCTAGG	1 cut(s)	953
XspI	CTAG	2 cut(s)	947, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.