MD09G1186900.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
16273205 .. 16274273
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1186900.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGAATTTGAGCACCGCCGAGGAGGAATCGGCGCAAGAAGTTCGTATTCCTGCTGAAATTGATTGGCAGATGCTTGATAAATCCAAGTTCTTCGTCCTTGGCGCCGCGCTGTTTTCCGGCGTTTCAGCGACTCTTTACCCTGTTGTGGTGTTGAAAACCCGGCAACAAGTAGCTCAATCCCAAGTCTCGTGCATCAAGACCGCGCTTTCGATTGTTAGGCATGATGGAATTAGGGCGTTGTATAGAGGATTTGGGACTTCTTTGATGGGTACAATACCTGCCCGGGCGCTTTACATGGCGGCGCTTGAGGTCACTAAGAGTAAAGTCGGAACTGCCACAATTAGGTTAGGGTTCTCGGAGTCCACTGCTGCCACCATTGCCAATGCCGCTGCAGGGTTGAGTGCATCAATGGCTTCACAGCTTGTGTGGACTCCAATTGATGTTGTGAGTCAGAGATTGATGGTGCAAGGTGGTGTGAAGTCAAATCCCAAAGTTCCTAGTGCATCTGATTGTAAATATGTTAACGGGATCGATGCATTTAGGAAAATCATGAAGACGGATGGGCCAAGAGGATTGTATAGAGGGTTTGGGATATCGATTGTGACATATGCACCGTCAAGTGCAATTTGGTGGGCATCTTACTCTGTTGCTCAAAGAACAGTTTGGGATGGAGTTGGGTATTACCTTTGTAAAAAAGGTGATTTGAGCAATGAGAATGGAGTCAACACGTATACACCGGGTTCGAAAACAGTCATGGCAGTTCAGGGAGTCAGTGCAGCCATGGCGGGTGGCATGTCAGCCCTGATCACAATGCCCCTCGATACAGTTAAGACAAGGCTGCAAGTTTTGGATGGGGAGGAGAACGGCCGTCGTGGACCAACAATTGGACAGACTATTCGGAATCTGGTTAAGGAAGGTGGGTGGACGGCTTGTTACAGAGGATTGGGGCCGCGTTGGGCTTCAATGTCAGTCTCTGCAACAACAATGATCACCACCTACGAGTTTCTGAAACGGTTCTCCACGAAGAATCAAGAGGTATTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

349

Amino Acids

37.43

Weight (kDa)

9.61

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 35 - 109 1.4e-12 Mitochondrial carrier protein
Mito_carr PF00153 125 - 221 7.1e-21 Mitochondrial carrier protein
Mito_carr PF00153 253 - 342 3.8e-19 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 884
AccI GTMKAC 1 cut(s) 731
AccII CGCG 3 cut(s) 107, 203, 952
AciI CCGC 7 cut(s) 15, 105, 201, 299, 387, 785, 950
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 4 cut(s) 145, 342, 393, 884
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 2 cut(s) 154, 963
AluBI AGCT 2 cut(s) 173, 421
AluI AGCT 2 cut(s) 173, 421
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 190, 976
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 3 cut(s) 563, 865, 947
ApeKI GCWGC 4 cut(s) 368, 389, 776, 838
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 4 cut(s) 190, 222, 879, 911
Asp700I GAANNNNTTC 1 cut(s) 1013
AspLEI GCGC 6 cut(s) 34, 104, 109, 205, 289, 304
AspS9I GGNCC 3 cut(s) 563, 875, 947
AsuC2I CCSGG 4 cut(s) 160, 283, 284, 738
AsuHPI GGTGA 2 cut(s) 710, 982
AsuII TTCGAA 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 875
BanI GGYRCC 1 cut(s) 101
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 355, 376, 788, 825
BccI CCATC 6 cut(s) 218, 259, 454, 554, 662, 845
BceAI ACGGC 3 cut(s) 852, 880, 942
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BclI TGATCA 2 cut(s) 804, 987
BcnI CCSGG 4 cut(s) 160, 283, 284, 738
BcoDI GTCTC 2 cut(s) 190, 976
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 3 cut(s) 105, 290, 305
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 8 cut(s) 105, 300, 369, 387, 390, 777, 839, 950
BlsI GCNGC 8 cut(s) 106, 301, 370, 388, 391, 778, 840, 951
Bme1390I CCNGG 4 cut(s) 160, 283, 284, 738
Bme18I GGWCC 1 cut(s) 875
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 3 cut(s) 563, 875, 947
BmiI GGNNCC 2 cut(s) 103, 948
BmrFI CCNGG 4 cut(s) 160, 283, 284, 738
BmsI GCATC 6 cut(s) 60, 201, 413, 512, 523, 644
BpiI GAAGAC 1 cut(s) 560
Bpu14I TTCGAA 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 4 cut(s) 160, 283, 284, 738
Bsa29I ATCGAT 2 cut(s) 531, 596
BsaAI YACGTR 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 18, 97, 282, 780
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 342, 393, 884
Bse3DI GCAATG 2 cut(s) 375, 715
BseCI ATCGAT 2 cut(s) 531, 596
BseDI CCNNGG 4 cut(s) 18, 97, 282, 780
BseGI GGATG 3 cut(s) 565, 673, 856
BseLI CCNNNNNNNGG 4 cut(s) 145, 342, 393, 884
BseMI GCAATG 2 cut(s) 375, 715
BseRI GAGGAG 2 cut(s) 35, 872
BseX3I CGGCCG 1 cut(s) 865
BseXI GCAGC 4 cut(s) 355, 376, 788, 825
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 3 cut(s) 107, 203, 952
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 3 cut(s) 565, 867, 949
BshNI GGYRCC 1 cut(s) 101
BshVI ATCGAT 2 cut(s) 531, 596
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 4 cut(s) 117, 160, 283, 737
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 4 cut(s) 145, 342, 393, 884
BsmAI GTCTC 2 cut(s) 190, 976
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 3 cut(s) 565, 867, 949
BsoBI CYCGRG 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 528, 804, 987
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 7 cut(s) 15, 105, 201, 299, 387, 785, 950
BspANI GGCC 3 cut(s) 565, 867, 949
BspDI ATCGAT 2 cut(s) 531, 596
BspFNI CGCG 3 cut(s) 107, 203, 952
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 103, 948
BspMAI CTGCAG 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 1 cut(s) 536
BspT104I TTCGAA 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 375, 715
BssECI CCNNGG 4 cut(s) 18, 97, 282, 780
BssMI GATC 3 cut(s) 528, 804, 987
BssNAI GTATAC 1 cut(s) 732
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 2 cut(s) 97, 780
Bst1107I GTATAC 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 187
Bst4CI ACNGT 5 cut(s) 615, 661, 751, 826, 1014
BstACI GRCGYC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 729
BstBI TTCGAA 1 cut(s) 743
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 565, 673, 856
BstFNI CGCG 3 cut(s) 107, 203, 952
BstH2I RGCGCY 3 cut(s) 105, 290, 305
BstHHI GCGC 6 cut(s) 34, 104, 109, 205, 289, 304
BstKTI GATC 3 cut(s) 531, 807, 990
BstMAI GTCTC 2 cut(s) 190, 976
BstMBI GATC 3 cut(s) 528, 804, 987
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 4 cut(s) 377, 386, 410, 782
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 4 cut(s) 158, 281, 282, 736
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 3 cut(s) 107, 203, 952
BstV1I GCAGC 4 cut(s) 355, 376, 788, 825
BstV2I GAAGAC 1 cut(s) 560
BstZ17I GTATAC 1 cut(s) 732
BstZI CGGCCG 1 cut(s) 865
Bsu15I ATCGAT 2 cut(s) 531, 596
BsuRI GGCC 3 cut(s) 565, 867, 949
BsuTUI ATCGAT 2 cut(s) 531, 596
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 3 cut(s) 565, 673, 856
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 363, 778
BveI ACCTGC 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 1 cut(s) 549
CfoI GCGC 6 cut(s) 34, 104, 109, 205, 289, 304
Cfr13I GGNCC 3 cut(s) 563, 875, 947
Cfr9I CCCGGG 1 cut(s) 282
ClaI ATCGAT 2 cut(s) 531, 596
Csp6I GTAC 1 cut(s) 270
CviAII CATG 7 cut(s) 221, 295, 550, 754, 781, 793, 1044
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 315
DinI GGCGCC 1 cut(s) 103
DpnI GATC 3 cut(s) 530, 806, 989
DpnII GATC 3 cut(s) 528, 804, 987
EaeI YGGCCR 1 cut(s) 865
EagI CGGCCG 1 cut(s) 865
EclXI CGGCCG 1 cut(s) 865
Eco130I CCWWGG 2 cut(s) 97, 780
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 875
Eco52I CGGCCG 1 cut(s) 865
Eco88I CYCGRG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 97, 780
EcoT22I ATGCAT 1 cut(s) 538
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 97, 780
FaeI CATG 7 cut(s) 224, 298, 553, 757, 784, 796, 1047
FaqI GGGAC 1 cut(s) 268
FatI CATG 7 cut(s) 220, 294, 549, 753, 780, 792, 1043
FauI CCCGC 1 cut(s) 778
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 2 cut(s) 804, 987
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 8 cut(s) 105, 300, 369, 387, 390, 777, 839, 950
FokI GGATG 3 cut(s) 572, 680, 863
Fsp4HI GCNGC 8 cut(s) 105, 300, 369, 387, 390, 777, 839, 950
FspBI CTAG 1 cut(s) 498
GlaI GCGC 6 cut(s) 33, 103, 108, 204, 288, 303
GluI GCNGC 8 cut(s) 105, 300, 369, 387, 390, 777, 839, 950
HaeII RGCGCY 3 cut(s) 105, 290, 305
HaeIII GGCC 3 cut(s) 565, 867, 949
HapII CCGG 4 cut(s) 117, 160, 283, 737
HhaI GCGC 6 cut(s) 34, 104, 109, 205, 289, 304
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 7 cut(s) 224, 298, 553, 757, 784, 796, 1047
Hin6I GCGC 6 cut(s) 32, 102, 107, 203, 287, 302
HinP1I GCGC 6 cut(s) 32, 102, 107, 203, 287, 302
HincII GTYRAC 2 cut(s) 523, 724
HindII GTYRAC 2 cut(s) 523, 724
HinfI GANTC 9 cut(s) 26, 130, 359, 430, 448, 720, 768, 901, 1027
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 4 cut(s) 117, 160, 283, 737
HphI GGTGA 2 cut(s) 710, 982
Hpy166II GTNNAC 7 cut(s) 363, 429, 523, 724, 732, 875, 924
Hpy188I TCNGA 6 cut(s) 329, 358, 453, 508, 900, 1008
Hpy188III TCNNGA 3 cut(s) 196, 550, 1031
Hpy8I GTNNAC 7 cut(s) 363, 429, 523, 724, 732, 875, 924
Hpy99I CGWCG 1 cut(s) 873
HpyAV CCTTC 1 cut(s) 908
HpyCH4III ACNGT 5 cut(s) 615, 661, 751, 826, 1014
HpyCH4IV ACGT 1 cut(s) 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 386, 410, 782
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 728
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 7 cut(s) 224, 298, 553, 757, 784, 796, 1047
HspAI GCGC 6 cut(s) 32, 102, 107, 203, 287, 302
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 2 cut(s) 804, 987
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 3 cut(s) 528, 804, 987
Lsp1109I GCAGC 4 cut(s) 355, 376, 788, 825
LweI GCATC 6 cut(s) 60, 201, 413, 512, 523, 644
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 3 cut(s) 310, 601, 932
MalI GATC 3 cut(s) 530, 806, 989
MboI GATC 3 cut(s) 528, 804, 987
MboII GAAGA 3 cut(s) 82, 565, 1036
MfeI CAATTG 2 cut(s) 435, 882
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 7 cut(s) 4, 57, 228, 339, 435, 624, 882
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 6 cut(s) 124, 368, 424, 457, 729, 777
MmeI TCCRAC 1 cut(s) 307
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 3 cut(s) 522, 828, 909
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 4 cut(s) 117, 160, 283, 737
MspR9I CCNGG 4 cut(s) 160, 283, 284, 738
MteI GCGCNGCGC 1 cut(s) 105
MunI CAATTG 2 cut(s) 435, 882
MvnI CGCG 3 cut(s) 107, 203, 952
MwoI GCNNNNNNNGC 4 cut(s) 377, 386, 410, 782
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 4 cut(s) 160, 283, 284, 738
NcoI CCATGG 1 cut(s) 780
NdeI CATATG 1 cut(s) 607
NdeII GATC 3 cut(s) 528, 804, 987
NlaIII CATG 7 cut(s) 224, 298, 553, 757, 784, 796, 1047
NlaIV GGNNCC 2 cut(s) 103, 948
NmeAIII GCCGAG 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 310, 601
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 743
PagI TCATGA 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 3 cut(s) 26, 901, 1027
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 8 cut(s) 106, 301, 370, 388, 391, 778, 840, 951
PleI GAGTC 6 cut(s) 124, 367, 424, 456, 728, 776
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 6 cut(s) 124, 367, 424, 456, 728, 776
Ppu21I YACGTR 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 103, 948
PspPI GGNCC 3 cut(s) 563, 875, 947
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 974
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 3 cut(s) 522, 828, 909
SatI GCNGC 8 cut(s) 105, 300, 369, 387, 390, 777, 839, 950
Sau3AI GATC 3 cut(s) 528, 804, 987
Sau96I GGNCC 3 cut(s) 563, 875, 947
SchI GAGTC 6 cut(s) 124, 368, 424, 457, 729, 777
ScrFI CCNGG 4 cut(s) 160, 283, 284, 738
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 6 cut(s) 60, 201, 413, 512, 523, 644
SfcI CTRYAG 1 cut(s) 390
SfoI GGCGCC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 743
SinI GGWCC 1 cut(s) 875
SmaI CCCGGG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SrfI GCCCGGGC 1 cut(s) 284
Sse9I AATT 7 cut(s) 4, 57, 228, 339, 435, 624, 882
SsiI CCGC 7 cut(s) 15, 105, 201, 299, 387, 785, 950
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 4 cut(s) 158, 281, 282, 736
StyI CCWWGG 2 cut(s) 97, 780
TaaI ACNGT 5 cut(s) 615, 661, 751, 826, 1014
TaiI ACGT 1 cut(s) 731
TaqI TCGA 5 cut(s) 209, 531, 596, 743, 819
TasI AATT 7 cut(s) 4, 57, 228, 339, 435, 624, 882
TauI GCSGC 4 cut(s) 107, 302, 389, 952
TfiI GAWTC 3 cut(s) 26, 901, 1027
Tru1I TTAA 3 cut(s) 522, 828, 909
Tru9I TTAA 3 cut(s) 522, 828, 909
TscAI CASTG 2 cut(s) 370, 778
TseFI GTSAC 2 cut(s) 310, 601
TseI GCWGC 4 cut(s) 368, 389, 776, 838
Tsp45I GTSAC 2 cut(s) 310, 601
TspDTI ATGAA 2 cut(s) 17, 566
TspGWI ACGGA 1 cut(s) 572
TspMI CCCGGG 1 cut(s) 282
TspRI CASTG 2 cut(s) 370, 778
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 875
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 796
XmaI CCCGGG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 1013
XspI CTAG 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.