Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

3627755 .. 3629835

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1053000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAGTTTGAGCGCGGCCGAGGACGATTCGGCTTCGGAAATCCACATCCCAGCTGATATAGATTGGCATATGCTGGACAAGTCCAAGTTTTTCTTTCTGGGTGCTGCTTTGTTTTCTGGTGTATCAGGTGCTCTGTATCCAATTGTGGTGTTAAAAACCCGTCAGCAAGTGTCACCCACTCAGATTTCTTGCTTGAAGATGTCTTTTGCTATCATGCGCTACGAAGGTCCTAAAGGGTTTTACAGAGGTTTTGGGACCTCTCTGATGGGAACAATTCCGGCTCGAGCGCTTTACATGGCGGCGCTTGAAGTTACCAAGAGCAATGTTGGGACTGTGACTGTTAGATTAGGATTTTCGGATACTACAGCTATGGCAATAGCGAATGCTGCTGCAGGGTTGAGCTCAGCCATGGCGGCCCAATTAGTTTGGACCCCGATCGATGTTGTGAGCCAGAGACTCATGGTTCAGGGCTGCACCAGCAGCACCGGACACATCCTCCCCAGTGTGAATTCTTATAAGTACAGAAATGGCCTTGATGCTTTTAGGAAAATTTTACATGCCGATGGATTGAGAGGATTGTACAGGGGATTTGGGATTGCGTCACTGACTTATGCGCCTTCAAATGCGGTTTGGTGGGCTTCTTACTCTGTTGCACACAGACTCATTTGGGATGGTTACGGTTGCTATATGTGTAAGAAAGATGAGAGTGGCTCAGGCAATGGGTCTAATTTGCGTCCTGATTGCAAAGCAATGCTGGCAGTGCAGGCGTTCAGTGCTGGCATGGCAAGTGGGTTTTCTGCTCTGATTACCATGCCGCTGGATACTGTCAAGACGCGCTTGCAAGTTCTGGATGCAGAAGAAAACGGGCAAAGAAGACCGCTGACAATAATGCAGACGGTGAGAAATCTGGTGAGGGAAGGAGGGTTTGCTGCTTGTTACAGAGGGCTAGGGCCTAGGTGGGCTTCAGTGGCAATGTCTTCCACAACCATGGTTACTACCTATGAGTTTCTCAAAAGAATGTCTACCAAGAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

346

Amino Acids

37.41

Weight (kDa)

9.42

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	43 - 109	9.7e-12	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 223	1.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	254 - 343	1.1e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	1022
AccII	CGCG	2 cut(s)	14, 835
AciI	CCGC	6 cut(s)	14, 299, 413, 626, 815, 878
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	508, 549
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	2 cut(s)	521, 581
AfeI	AGCGCT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	196, 308, 621
AluBI	AGCT	3 cut(s)	53, 368, 402
AluI	AGCT	3 cut(s)	53, 368, 402
Alw21I	GWGCWC	2 cut(s)	133, 404
Alw26I	GTCTC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	4 cut(s)	15, 414, 529, 950
ApeKI	GCWGC	6 cut(s)	104, 386, 389, 471, 480, 929
ApoI	RAATTY	2 cut(s)	508, 549
AspA2I	CCTAGG	1 cut(s)	953
AspLEI	GCGC	6 cut(s)	14, 219, 289, 304, 616, 837
AspS9I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
AsuHPI	GGTGA	3 cut(s)	165, 910, 922
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	227, 255, 429
AvrII	CCTAGG	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	880, 969
Bbv12I	GWGCWC	2 cut(s)	133, 404
BbvI	GCAGC	6 cut(s)	91, 373, 376, 458, 492, 916
BccI	CCATC	3 cut(s)	259, 557, 665
BciVI	GTATCC	3 cut(s)	147, 352, 814
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	2 cut(s)	947, 954
BfmI	CTRYAG	2 cut(s)	363, 390
BfoI	RGCGCY	2 cut(s)	290, 305
BfuI	GTATCC	3 cut(s)	147, 352, 814
BglI	GCCNNNNNGGC	1 cut(s)	413
BlnI	CCTAGG	1 cut(s)	953
BlpI	GCTNAGC	1 cut(s)	403
Bme18I	GGWCC	3 cut(s)	227, 255, 429
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
BmiI	GGNNCC	2 cut(s)	256, 431
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	526, 841
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	2 cut(s)	880, 969
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
Bpu10I	CCTNAGC	1 cut(s)	712
Bpu1102I	GCTNAGC	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	18, 408, 953, 987
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	4 cut(s)	328, 724, 756, 978
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	18, 408, 953, 987
BseGI	GGATG	4 cut(s)	45, 492, 676, 856
BseMI	GCAATG	4 cut(s)	328, 724, 756, 978
BseMII	CTCAG	3 cut(s)	194, 417, 726
BseNI	ACTGG	1 cut(s)	501
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	6 cut(s)	91, 373, 376, 458, 492, 916
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	2 cut(s)	457, 782
Bsh1236I	CGCG	2 cut(s)	14, 835
Bsh1285I	CGRYCG	2 cut(s)	18, 438
BshFI	GGCC	4 cut(s)	17, 416, 531, 952
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	2 cut(s)	18, 438
BsiHKAI	GWGCWC	2 cut(s)	133, 404
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	278, 486
BslFI	GGGAC	2 cut(s)	268, 343
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	2 cut(s)	268, 343
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	17, 416, 531, 952
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	133, 404
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	403
Bsp19I	CCATGG	2 cut(s)	408, 987
BspACI	CCGC	6 cut(s)	14, 299, 413, 626, 815, 878
BspANI	GGCC	4 cut(s)	17, 416, 531, 952
BspCNI	CTCAG	3 cut(s)	193, 416, 725
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	2 cut(s)	14, 835
BspLI	GGNNCC	2 cut(s)	256, 431
BspMAI	CTGCAG	1 cut(s)	394
BsrDI	GCAATG	4 cut(s)	328, 724, 756, 978
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	4 cut(s)	18, 408, 953, 987
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	408, 953, 987
Bst4CI	ACNGT	5 cut(s)	334, 340, 680, 826, 898
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	756, 765, 778, 839
BstDEI	CTNAG	3 cut(s)	180, 403, 712
BstDSI	CCRYGG	2 cut(s)	408, 987
BstF5I	GGATG	4 cut(s)	45, 492, 676, 856
BstFNI	CGCG	2 cut(s)	14, 835
BstH2I	RGCGCY	2 cut(s)	290, 305
BstHHI	GCGC	6 cut(s)	14, 219, 289, 304, 616, 837
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	435
BstMCI	CGRYCG	2 cut(s)	18, 438
BstNSI	RCATGY	1 cut(s)	560
BstSFI	CTRYAG	2 cut(s)	363, 390
BstUI	CGCG	2 cut(s)	14, 835
BstV1I	GCAGC	6 cut(s)	91, 373, 376, 458, 492, 916
BstV2I	GAAGAC	2 cut(s)	880, 969
BstXI	CCANNNNNNTGG	2 cut(s)	817, 988
BstZI	CGGCCG	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	3 cut(s)	147, 352, 814
BsuRI	GGCC	4 cut(s)	17, 416, 531, 952
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	2 cut(s)	408, 987
BtsCI	GGATG	4 cut(s)	45, 492, 676, 856
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	5 cut(s)	508, 602, 765, 778, 972
Cac8I	GCNNGC	4 cut(s)	756, 765, 778, 839
CfoI	GCGC	6 cut(s)	14, 219, 289, 304, 616, 837
Cfr13I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	3 cut(s)	588, 722, 841
Csp6I	GTAC	2 cut(s)	520, 580
CviAII	CATG	8 cut(s)	214, 295, 409, 460, 557, 781, 811, 988
CviQI	GTAC	2 cut(s)	520, 580
DdeI	CTNAG	3 cut(s)	180, 403, 712
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	408, 953, 987
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	3 cut(s)	227, 255, 429
Eco47III	AGCGCT	1 cut(s)	288
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	3 cut(s)	227, 255, 950
EcoRI	GAATTC	1 cut(s)	508
EcoT14I	CCWWGG	3 cut(s)	408, 953, 987
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	3 cut(s)	408, 953, 987
FaeI	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 821, 853
FaqI	GGGAC	2 cut(s)	268, 343
FatI	CATG	8 cut(s)	213, 294, 408, 459, 556, 780, 810, 987
FauNDI	CATATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	1022
FokI	GGATG	4 cut(s)	32, 479, 683, 863
FriOI	GRGCYC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	947, 954
GlaI	GCGC	6 cut(s)	13, 218, 288, 303, 615, 836
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	2 cut(s)	290, 305
HaeIII	GGCC	4 cut(s)	17, 416, 531, 952
HapII	CCGG	2 cut(s)	278, 486
HgaI	GACGC	3 cut(s)	588, 722, 841
HhaI	GCGC	6 cut(s)	14, 219, 289, 304, 616, 837
Hin1II	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
Hin6I	GCGC	6 cut(s)	12, 217, 287, 302, 614, 835
HinP1I	GCGC	6 cut(s)	12, 217, 287, 302, 614, 835
HinfI	GANTC	4 cut(s)	26, 456, 660, 1030
HpaII	CCGG	2 cut(s)	278, 486
HphI	GGTGA	3 cut(s)	165, 910, 922
Hpy166II	GTNNAC	1 cut(s)	1023
Hpy188I	TCNGA	5 cut(s)	37, 183, 264, 358, 804
Hpy188III	TCNNGA	3 cut(s)	737, 829, 848
Hpy8I	GTNNAC	1 cut(s)	1023
HpyAV	CCTTC	3 cut(s)	218, 627, 911
HpyCH4III	ACNGT	5 cut(s)	334, 340, 680, 826, 898
HpyCH4V	TGCA	8 cut(s)	392, 474, 653, 744, 763, 841, 854, 892
HpyF3I	CTNAG	3 cut(s)	180, 403, 712
Hsp92II	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
HspAI	GCGC	6 cut(s)	12, 217, 287, 302, 614, 835
Kzo9I	GATC	1 cut(s)	435
Lsp1109I	GCAGC	6 cut(s)	91, 373, 376, 458, 492, 916
LweI	GCATC	2 cut(s)	526, 841
MaeI	CTAG	2 cut(s)	947, 954
MaeIII	GTNAC	7 cut(s)	171, 310, 334, 600, 674, 935, 991
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	4 cut(s)	208, 869, 885, 969
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	133, 404
MluCI	AATT	6 cut(s)	141, 273, 419, 508, 549, 727
MlyI	GAGTC	2 cut(s)	450, 654
MnlI	CCTC	8 cut(s)	13, 239, 268, 506, 566, 906, 914, 935
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	2 cut(s)	561, 986
MspA1I	CMGCKG	3 cut(s)	53, 817, 880
MspI	CCGG	2 cut(s)	278, 486
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	2 cut(s)	14, 835
NcoI	CCATGG	2 cut(s)	408, 987
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	8 cut(s)	217, 298, 412, 463, 560, 784, 814, 991
NlaIV	GGNNCC	2 cut(s)	256, 431
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	3 cut(s)	171, 334, 600
NspI	RCATGY	1 cut(s)	560
PaeR7I	CTCGAG	1 cut(s)	282
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	26, 1030
Ple19I	CGATCG	1 cut(s)	438
PleI	GAGTC	2 cut(s)	450, 654
PpsI	GAGTC	2 cut(s)	450, 654
PpuMI	RGGWCCY	2 cut(s)	227, 255
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	404
Psp5II	RGGWCCY	2 cut(s)	227, 255
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	256, 431
PspPI	GGNCC	5 cut(s)	227, 255, 415, 429, 950
PspPPI	RGGWCCY	2 cut(s)	227, 255
PspXI	VCTCGAGB	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	394
PvuI	CGATCG	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	521, 581
RsaNI	GTAC	2 cut(s)	520, 580
RseI	CAYNNNNRTG	2 cut(s)	561, 986
SacI	GAGCTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	5 cut(s)	227, 255, 415, 429, 950
SchI	GAGTC	2 cut(s)	450, 654
SduI	GDGCHC	2 cut(s)	133, 404
SetI	ASST	9 cut(s)	55, 130, 229, 250, 260, 370, 404, 959, 1001
SfaNI	GCATC	2 cut(s)	526, 841
SfcI	CTRYAG	2 cut(s)	363, 390
Sfr274I	CTCGAG	1 cut(s)	282
SinI	GGWCC	3 cut(s)	227, 255, 429
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	561, 986
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	6 cut(s)	141, 273, 419, 508, 549, 727
SsiI	CCGC	6 cut(s)	14, 299, 413, 626, 815, 878
SspMI	CTAG	2 cut(s)	947, 954
SstI	GAGCTC	1 cut(s)	404
StyI	CCWWGG	3 cut(s)	408, 953, 987
TaaI	ACNGT	5 cut(s)	334, 340, 680, 826, 898
TaqI	TCGA	2 cut(s)	283, 438
TasI	AATT	6 cut(s)	141, 273, 419, 508, 549, 727
TatI	WGTACW	2 cut(s)	519, 579
TauI	GCSGC	4 cut(s)	17, 302, 416, 817
TfiI	GAWTC	2 cut(s)	26, 1030
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	5 cut(s)	508, 609, 765, 778, 972
TseFI	GTSAC	3 cut(s)	171, 334, 600
TseI	GCWGC	6 cut(s)	104, 386, 389, 471, 480, 929
Tsp45I	GTSAC	3 cut(s)	171, 334, 600
TspRI	CASTG	5 cut(s)	508, 609, 765, 778, 972
VpaK11BI	GGWCC	3 cut(s)	227, 255, 429
XapI	RAATTY	2 cut(s)	508, 549
XceI	RCATGY	1 cut(s)	560
XhoI	CTCGAG	1 cut(s)	282
XmaJI	CCTAGG	1 cut(s)	953
XmiI	GTMKAC	1 cut(s)	1022
XspI	CTAG	2 cut(s)	947, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.