Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

23064474 .. 23065513

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAACTTGAGAACCGCCGAGGATGAATCGGCGAAAAAAGAGATTCATATCCCGGCCGAAATCGACTGGGAAATGCTTGATAAGTCCAAGTTCTTTTTCCTCGGAGCGGCGCTCTTTTCCGGCGTATCGGCGACTCTCTACCCTGTCGTGGTTTTGAAAACCAGGCAACAAGTAGCTCAGTCTCAGCTCTCGTGTATCAAGACGGCGTTTTCGATCGTCAGGCATGAAGGATTTCGGGCATTGTATAGAGGCTTTGGGACTTCTTTGATGGGCACAATACCTGCCCGGGCGCTGTACATGGCGGCGCTTGAGATCACCAAGAGTAATGTGGGCACTGCCACCGTTAGGTTAGGGTTTTCGGAGTCGTCCGCTGCCGCGATTGCCAATGCGGTTGCAGGGTTGAGTGCTGCGATGGCGGCTCAGCTTGTGTGGACTCCAACTGATGTTGTGAGTCAGAGACTGATGGTGCAAGGCGGTGTGAATCCGAATGCCAAGTTTCCTAAAGCGTCATCTTGTAAATATGTTAATGGCCAGTCGAATGAGAATGGGGTTAATACGTATAGACCTGATTCGAAGACAATAATGGCAGTTCAGGGAGCCAGTGCAGCCATGGCGGGTGGCATGTCAGCTTTGATCACAATGCCACTCGACACGGTCAAGACGAGGCTGCAAGTTCTGGATGGGGATGACAATGGGCGGCGCGGACCAAGCATTGGGCAGACTGTTCGGAATTTGGTTAAAGAAGGCGGGTGGATGGCTTGTTACAGAGGATTGGGGCCAAGATGGGCTTCAATGTCGATTTCTGCAACCACCATGATCACCACCTATGAGTTTCTCAAACGGCTCTCCACAAAGAATCAAGAGGTTTTGACCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

292

Amino Acids

31.43

Weight (kDa)

9.71

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 110	4.1e-13	Mitochondrial carrier protein
Mito_carr	PF00153	198 - 285	5.2e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccBSI	CCGCTC	1 cut(s)	107
AccII	CGCG	2 cut(s)	377, 702
AcoI	YGGCCR	2 cut(s)	54, 529
AcsI	RAATTY	1 cut(s)	730
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 713
AgsI	TTSAA	2 cut(s)	157, 792
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	4 cut(s)	80, 112, 772, 804
AluBI	AGCT	4 cut(s)	176, 187, 424, 629
AluI	AGCT	4 cut(s)	176, 187, 424, 629
Alw26I	GTCTC	2 cut(s)	186, 451
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	3 cut(s)	54, 529, 776
ApeKI	GCWGC	4 cut(s)	371, 407, 605, 667
ApoI	RAATTY	1 cut(s)	730
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	4 cut(s)	112, 292, 307, 702
AspS9I	GGNCC	2 cut(s)	704, 776
AsuC2I	CCSGG	3 cut(s)	53, 286, 287
AsuHPI	GGTGA	2 cut(s)	307, 811
AsuII	TTCGAA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	704
BaeGI	GKGCMC	2 cut(s)	275, 335
BalI	TGGCCA	1 cut(s)	531
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	358, 394, 617, 654
BccI	CCATC	6 cut(s)	262, 406, 457, 674, 748, 777
BceAI	ACGGC	2 cut(s)	219, 857
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	2 cut(s)	633, 816
BcnI	CCSGG	3 cut(s)	53, 286, 287
BcoDI	GTCTC	2 cut(s)	186, 451
BfoI	RGCGCY	3 cut(s)	113, 293, 308
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	9 cut(s)	108, 303, 372, 375, 408, 417, 606, 668, 698
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	9 cut(s)	109, 304, 373, 376, 409, 418, 607, 669, 699
Bme1390I	CCNGG	4 cut(s)	53, 163, 286, 287
Bme18I	GGWCC	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	704, 776
BmiI	GGNNCC	2 cut(s)	598, 777
BmrFI	CCNGG	4 cut(s)	53, 163, 286, 287
BmrI	ACTGGG	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	581
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	28, 329
BpuMI	CCSGG	3 cut(s)	53, 286, 287
BsaAI	YACGTR	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	18, 100, 285, 609
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 713
Bse1I	ACTGG	3 cut(s)	71, 532, 600
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	4 cut(s)	18, 100, 285, 609
BseGI	GGATG	4 cut(s)	28, 685, 691, 759
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 713
BseMII	CTCAG	3 cut(s)	191, 197, 434
BseNI	ACTGG	3 cut(s)	71, 532, 600
BseSI	GKGCMC	2 cut(s)	275, 335
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	358, 394, 617, 654
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	2 cut(s)	377, 702
Bsh1285I	CGRYCG	2 cut(s)	57, 216
BshFI	GGCC	3 cut(s)	56, 531, 778
BsiEI	CGRYCG	2 cut(s)	57, 216
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	53, 120, 286
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 713
BsmAI	GTCTC	2 cut(s)	186, 451
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	56, 531, 778
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	275, 335
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	213, 312, 633, 816
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	609
BspANI	GGCC	3 cut(s)	56, 531, 778
BspCNI	CTCAG	3 cut(s)	190, 196, 433
BspFNI	CGCG	2 cut(s)	377, 702
BspLI	GGNNCC	2 cut(s)	598, 777
BspMI	ACCTGC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	71, 532, 600
BssECI	CCNNGG	4 cut(s)	18, 100, 285, 609
BssMI	GATC	4 cut(s)	213, 312, 633, 816
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	343, 655, 724
BstAUI	TGTACA	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	572
BstDEI	CTNAG	3 cut(s)	177, 183, 420
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	4 cut(s)	28, 685, 691, 759
BstFNI	CGCG	2 cut(s)	377, 702
BstH2I	RGCGCY	3 cut(s)	113, 293, 308
BstHHI	GCGC	4 cut(s)	112, 292, 307, 702
BstKTI	GATC	4 cut(s)	216, 315, 636, 819
BstMAI	GTCTC	2 cut(s)	186, 451
BstMBI	GATC	4 cut(s)	213, 312, 633, 816
BstMCI	CGRYCG	2 cut(s)	57, 216
BstMWI	GCNNNNNNNGC	6 cut(s)	380, 413, 416, 605, 611, 708
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	4 cut(s)	51, 161, 284, 285
BstSLI	GKGCMC	2 cut(s)	275, 335
BstSNI	TACGTA	1 cut(s)	558
BstUI	CGCG	2 cut(s)	377, 702
BstV1I	GCAGC	4 cut(s)	358, 394, 617, 654
BstV2I	GAAGAC	1 cut(s)	581
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	56, 531, 778
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	4 cut(s)	28, 685, 691, 759
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 607
BveI	ACCTGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	4 cut(s)	112, 292, 307, 702
Cfr13I	GGNCC	2 cut(s)	704, 776
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	224, 298, 610, 622, 814
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	177, 183, 420
DpnI	GATC	4 cut(s)	215, 314, 635, 818
DpnII	GATC	4 cut(s)	213, 312, 633, 816
EaeI	YGGCCR	2 cut(s)	54, 529
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	704
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	5 cut(s)	227, 301, 613, 625, 817
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	5 cut(s)	223, 297, 609, 621, 813
FauI	CCCGC	2 cut(s)	607, 740
FbaI	TGATCA	2 cut(s)	633, 816
Fnu4HI	GCNGC	9 cut(s)	108, 303, 372, 375, 408, 417, 606, 668, 698
FokI	GGATG	4 cut(s)	35, 692, 698, 766
Fsp4HI	GCNGC	9 cut(s)	108, 303, 372, 375, 408, 417, 606, 668, 698
GlaI	GCGC	4 cut(s)	111, 291, 306, 701
GluI	GCNGC	9 cut(s)	108, 303, 372, 375, 408, 417, 606, 668, 698
HaeII	RGCGCY	3 cut(s)	113, 293, 308
HaeIII	GGCC	3 cut(s)	56, 531, 778
HapII	CCGG	3 cut(s)	53, 120, 286
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	4 cut(s)	112, 292, 307, 702
Hin1II	CATG	5 cut(s)	227, 301, 613, 625, 817
Hin6I	GCGC	4 cut(s)	110, 290, 305, 700
HinP1I	GCGC	4 cut(s)	110, 290, 305, 700
HinfI	GANTC	9 cut(s)	26, 43, 133, 362, 433, 451, 481, 569, 856
HpaII	CCGG	3 cut(s)	53, 120, 286
HphI	GGTGA	2 cut(s)	307, 811
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	5 cut(s)	104, 361, 456, 486, 729
Hpy188III	TCNNGA	4 cut(s)	199, 658, 677, 860
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	2 cut(s)	221, 737
HpyCH4III	ACNGT	3 cut(s)	343, 655, 724
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	5 cut(s)	395, 469, 605, 670, 806
HpyF10VI	GCNNNNNNNGC	6 cut(s)	380, 413, 416, 605, 611, 708
HpyF3I	CTNAG	3 cut(s)	177, 183, 420
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	5 cut(s)	227, 301, 613, 625, 817
HspAI	GCGC	4 cut(s)	110, 290, 305, 700
Ksp22I	TGATCA	2 cut(s)	633, 816
Kzo9I	GATC	4 cut(s)	213, 312, 633, 816
LmnI	GCTCC	2 cut(s)	104, 596
Lsp1109I	GCAGC	4 cut(s)	358, 394, 617, 654
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	4 cut(s)	215, 314, 635, 818
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	4 cut(s)	213, 312, 633, 816
MboII	GAAGA	1 cut(s)	586
MhlI	GDGCHC	2 cut(s)	275, 335
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	1 cut(s)	730
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	4 cut(s)	127, 371, 427, 460
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	6 cut(s)	13, 110, 242, 657, 761, 856
Mox20I	TGGCCA	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	3 cut(s)	525, 552, 738
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	53, 120, 286
MspR9I	CCNGG	4 cut(s)	53, 163, 286, 287
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	377, 702
MwoI	GCNNNNNNNGC	6 cut(s)	380, 413, 416, 605, 611, 708
NciI	CCSGG	3 cut(s)	53, 286, 287
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	4 cut(s)	213, 312, 633, 816
NlaIII	CATG	5 cut(s)	227, 301, 613, 625, 817
NlaIV	GGNNCC	2 cut(s)	598, 777
NmeAIII	GCCGAG	1 cut(s)	43
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 659
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	26, 43, 481, 569, 856
PflFI	GACNNNGTC	1 cut(s)	653
PflMI	CCANNNNNTGG	1 cut(s)	713
PkrI	GCNGC	9 cut(s)	109, 304, 373, 376, 409, 418, 607, 669, 699
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	4 cut(s)	127, 370, 427, 459
PpsI	GAGTC	4 cut(s)	127, 370, 427, 459
Ppu21I	YACGTR	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	598, 777
PspPI	GGNCC	2 cut(s)	704, 776
PstNI	CAGNNNCTG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	653
PvuI	CGATCG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	525, 552, 738
SatI	GCNGC	9 cut(s)	108, 303, 372, 375, 408, 417, 606, 668, 698
Sau3AI	GATC	4 cut(s)	213, 312, 633, 816
Sau96I	GGNCC	2 cut(s)	704, 776
SchI	GAGTC	4 cut(s)	127, 371, 427, 460
ScrFI	CCNGG	4 cut(s)	53, 163, 286, 287
SduI	GDGCHC	2 cut(s)	275, 335
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	1 cut(s)	704
SmaI	CCCGGG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	7, 308
SmoI	CTYRAG	2 cut(s)	7, 308
SnaBI	TACGTA	1 cut(s)	558
SrfI	GCCCGGGC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	730
StyD4I	CCNGG	4 cut(s)	51, 161, 284, 285
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	343, 655, 724
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	6 cut(s)	63, 212, 536, 572, 648, 797
TasI	AATT	1 cut(s)	730
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	5 cut(s)	110, 305, 377, 419, 700
TfiI	GAWTC	5 cut(s)	26, 43, 481, 569, 856
Tru1I	TTAA	3 cut(s)	525, 552, 738
Tru9I	TTAA	3 cut(s)	525, 552, 738
TscAI	CASTG	2 cut(s)	340, 607
TseI	GCWGC	4 cut(s)	371, 407, 605, 667
TspDTI	ATGAA	4 cut(s)	17, 35, 39, 240
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	2 cut(s)	340, 607
Tth111I	GACNNNGTC	1 cut(s)	653
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	730
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 607
XmaI	CCCGGG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.