Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Forward (+)

66564514 .. 66565551

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG461000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAATTTGAGAGTCGCCGAGGATGAATCGGCGAAAAAAGAGATTCATATCCCGGCCGAAATCGACTGGGAAATGCTTGATAAATCCAAGTTCTTTTTCCTCGGAGCGGCGCTCTTTTCCGGCGTATCGGCGACTCTCTACCCTGTTGTGGTTTTGAAAACCAGGCAACAAGTAGCTCAGTCTCAGCTCTCGTGTATCAAGACGGCGTTTTCCATCGTCAGGCATGAAGGATTTCGGGCATTGTATAGAGGCTTCGGGACTTCTTTGATGGGCACAGTACCCGCCCGGGCGCTGTACATGGCGGCGCTTGAGATCACCAAGAGTAATGTGGGCGCTGCCACCGTTAGGTTAGGGTTTTCGGAGTCGTCCGCTGCCGCAATTGCCAATGCGGTTGCAGGGTTGAGTGCTGCGATGGCGGCTCAGCTTGTGTGGACTCCAATTGATGTTGTGAGTCAGAGACTGATGGTGCAAGGCGGTGTGAATCCGAATGCCAAGTTTCCTAAAGCGTCTTCTTGTAAATATGTTAATGGGTATGATGCTTTCAGGAAAATTCTTCGGAGTGATGGGCCGAGGGGGTTGTATAGAGGGTTCGGGATTTCGATTTTGACATATGCACCATCCAATGCGGTTTGGTGGGCATCATACTCTGTGGCTCAGAGGATGGTTTGGAGGGGAGTTGGGTATTATTCTTGTAAGAGCAATGAGGATGGGGTTAACACGTATAGGCCTGATTCGAAGACAATAATGGCAGTTCAGGGAGCCAGTGCAGCCATGGCGGGTGGCGTGTCAGCTTTGATCACAATGCCACTCGACACGGTCAAGACGAGGCTGCAAGTTCTGGATGGGGATGACAATGGCCGGCGGGGACCAGGCATTGGGCAGACTGTTCGGAATTTGGTTAAAGAAGGCGGGTGGATGGCTTGTTACAGAGGATTGGGGCCAAGGTGGGCCTCAATGTCGATTTCTGCAACCACCATGATCACCACCTATGAGTTTCTGAAACGGCTCTCCACTAAGAATCAAGAGGTTTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

345

Amino Acids

37.38

Weight (kDa)

9.73

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 109	6.2e-13	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 222	1.2e-20	Mitochondrial carrier protein
Mito_carr	PF00153	252 - 339	5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	107
AcoI	YGGCCR	2 cut(s)	54, 856
AcsI	RAATTY	3 cut(s)	4, 549, 892
AfaI	GTAC	2 cut(s)	279, 296
AfiI	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 875
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	161, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	4 cut(s)	176, 187, 424, 791
AluI	AGCT	4 cut(s)	176, 187, 424, 791
Alw26I	GTCTC	2 cut(s)	186, 451
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	6 cut(s)	54, 566, 725, 856, 938, 948
ApeKI	GCWGC	5 cut(s)	335, 371, 407, 767, 829
ApoI	RAATTY	3 cut(s)	4, 549, 892
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	4 cut(s)	112, 292, 307, 335
AspS9I	GGNCC	4 cut(s)	566, 866, 938, 948
AsuC2I	CCSGG	3 cut(s)	53, 286, 287
AsuHPI	GGTGA	2 cut(s)	307, 973
AsuII	TTCGAA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	866
BaeGI	GKGCMC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	501, 743
BbvI	GCAGC	5 cut(s)	322, 358, 394, 779, 816
BceAI	ACGGC	2 cut(s)	219, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BciT130I	CCWGG	2 cut(s)	163, 870
BclI	TGATCA	2 cut(s)	795, 978
BcnI	CCSGG	3 cut(s)	53, 286, 287
BcoDI	GTCTC	2 cut(s)	186, 451
BfoI	RGCGCY	4 cut(s)	113, 293, 308, 336
BisI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 768, 830
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	9 cut(s)	109, 304, 337, 373, 376, 409, 418, 769, 831
Bme1390I	CCNGG	5 cut(s)	53, 163, 286, 287, 870
Bme18I	GGWCC	1 cut(s)	866
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	566, 866, 938, 948
BmiI	GGNNCC	3 cut(s)	760, 867, 939
BmrFI	CCNGG	5 cut(s)	53, 163, 286, 287, 870
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	526, 647
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	2 cut(s)	501, 743
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	3 cut(s)	53, 286, 287
BsaAI	YACGTR	1 cut(s)	720
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	6 cut(s)	18, 100, 285, 569, 771, 941
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 875
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	2 cut(s)	71, 762
Bse3DI	GCAATG	1 cut(s)	706
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	163, 870
BseDI	CCNNGG	6 cut(s)	18, 100, 285, 569, 771, 941
BseGI	GGATG	7 cut(s)	28, 617, 666, 712, 847, 853, 921
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 875
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	4 cut(s)	191, 197, 434, 668
BseNI	ACTGG	2 cut(s)	71, 762
BseSI	GKGCMC	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	5 cut(s)	322, 358, 394, 779, 816
BsgI	GTGCAG	1 cut(s)	786
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	6 cut(s)	56, 568, 727, 858, 940, 950
BsiEI	CGRYCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	53, 120, 286, 859
BslFI	GGGAC	2 cut(s)	271, 879
BslI	CCNNNNNNNGG	5 cut(s)	106, 148, 219, 345, 875
BsmAI	GTCTC	2 cut(s)	186, 451
BsmFI	GGGAC	2 cut(s)	271, 879
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	6 cut(s)	56, 568, 727, 858, 940, 950
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	312, 795, 978
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	771
BspANI	GGCC	6 cut(s)	56, 568, 727, 858, 940, 950
BspCNI	CTCAG	4 cut(s)	190, 196, 433, 667
BspLI	GGNNCC	3 cut(s)	760, 867, 939
BspT104I	TTCGAA	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	858
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	71, 762
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	6 cut(s)	18, 100, 285, 569, 771, 941
BssMI	GATC	3 cut(s)	312, 795, 978
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	771, 941
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	163, 870
Bst4CI	ACNGT	4 cut(s)	277, 343, 817, 886
BstAUI	TGTACA	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	860
BstDEI	CTNAG	5 cut(s)	177, 183, 420, 654, 1014
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	7 cut(s)	28, 617, 666, 712, 847, 853, 921
BstH2I	RGCGCY	4 cut(s)	113, 293, 308, 336
BstHHI	GCGC	4 cut(s)	112, 292, 307, 335
BstKTI	GATC	3 cut(s)	315, 798, 981
BstMAI	GTCTC	2 cut(s)	186, 451
BstMBI	GATC	3 cut(s)	312, 795, 978
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 413, 416, 767, 773
BstNI	CCWGG	2 cut(s)	163, 870
BstSCI	CCNGG	5 cut(s)	51, 161, 284, 285, 868
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	5 cut(s)	322, 358, 394, 779, 816
BstV2I	GAAGAC	2 cut(s)	501, 743
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	6 cut(s)	56, 568, 727, 858, 940, 950
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	7 cut(s)	28, 617, 666, 712, 847, 853, 921
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	860
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	4 cut(s)	112, 292, 307, 335
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	4 cut(s)	566, 866, 938, 948
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	278, 295
CviAII	CATG	5 cut(s)	224, 298, 772, 976, 1035
CviQI	GTAC	2 cut(s)	278, 295
DdeI	CTNAG	5 cut(s)	177, 183, 420, 654, 1014
DpnI	GATC	3 cut(s)	314, 797, 980
DpnII	GATC	3 cut(s)	312, 795, 978
EaeI	YGGCCR	2 cut(s)	54, 856
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	771, 941
Eco147I	AGGCCT	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	866
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	161, 868
EcoT14I	CCWWGG	2 cut(s)	771, 941
ErhI	CCWWGG	2 cut(s)	771, 941
FaeI	CATG	5 cut(s)	227, 301, 775, 979, 1038
FaqI	GGGAC	2 cut(s)	271, 879
FatI	CATG	5 cut(s)	223, 297, 771, 975, 1034
FauI	CCCGC	4 cut(s)	289, 769, 855, 902
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	2 cut(s)	795, 978
Fnu4HI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 768, 830
FokI	GGATG	7 cut(s)	35, 604, 673, 719, 854, 860, 928
Fsp4HI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 768, 830
GlaI	GCGC	4 cut(s)	111, 291, 306, 334
GluI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 768, 830
HaeII	RGCGCY	4 cut(s)	113, 293, 308, 336
HaeIII	GGCC	6 cut(s)	56, 568, 727, 858, 940, 950
HapII	CCGG	4 cut(s)	53, 120, 286, 859
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	4 cut(s)	112, 292, 307, 335
Hin1II	CATG	5 cut(s)	227, 301, 775, 979, 1038
Hin6I	GCGC	4 cut(s)	110, 290, 305, 333
HinP1I	GCGC	4 cut(s)	110, 290, 305, 333
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	4 cut(s)	53, 120, 286, 859
HphI	GGTGA	2 cut(s)	307, 973
Hpy166II	GTNNAC	2 cut(s)	432, 715
Hpy188I	TCNGA	8 cut(s)	104, 361, 456, 486, 558, 657, 891, 999
Hpy188III	TCNNGA	7 cut(s)	199, 256, 544, 592, 820, 839, 1022
Hpy8I	GTNNAC	2 cut(s)	432, 715
HpyAV	CCTTC	2 cut(s)	221, 899
HpyCH4III	ACNGT	4 cut(s)	277, 343, 817, 886
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	6 cut(s)	395, 469, 614, 767, 832, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 413, 416, 767, 773
HpyF3I	CTNAG	5 cut(s)	177, 183, 420, 654, 1014
HpySE526I	ACGT	1 cut(s)	719
Hsp92II	CATG	5 cut(s)	227, 301, 775, 979, 1038
HspAI	GCGC	4 cut(s)	110, 290, 305, 333
KroI	GCCGGC	1 cut(s)	858
KroNI	GCCGGC	1 cut(s)	860
Ksp22I	TGATCA	2 cut(s)	795, 978
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	312, 795, 978
LmnI	GCTCC	2 cut(s)	104, 758
Lsp1109I	GCAGC	5 cut(s)	322, 358, 394, 779, 816
LweI	GCATC	2 cut(s)	526, 647
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	3 cut(s)	314, 797, 980
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	3 cut(s)	312, 795, 978
MboII	GAAGA	3 cut(s)	501, 545, 748
MfeI	CAATTG	2 cut(s)	378, 438
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	5 cut(s)	4, 378, 438, 549, 892
MlyI	GAGTC	5 cut(s)	21, 127, 371, 427, 460
MroNI	GCCGGC	1 cut(s)	858
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	525, 714, 900
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	4 cut(s)	53, 120, 286, 859
MspR9I	CCNGG	5 cut(s)	53, 163, 286, 287, 870
MunI	CAATTG	2 cut(s)	378, 438
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	163, 870
MwoI	GCNNNNNNNGC	5 cut(s)	380, 413, 416, 767, 773
NaeI	GCCGGC	1 cut(s)	860
NciI	CCSGG	3 cut(s)	53, 286, 287
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	312, 795, 978
NgoMIV	GCCGGC	1 cut(s)	858
NlaIII	CATG	5 cut(s)	227, 301, 775, 979, 1038
NlaIV	GGNNCC	3 cut(s)	760, 867, 939
NmeAIII	GCCGAG	2 cut(s)	43, 594
NspV	TTCGAA	1 cut(s)	734
PceI	AGGCCT	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	821
PctI	GAATGC	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	860
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	26, 43, 481, 731, 1018
PflFI	GACNNNGTC	1 cut(s)	815
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	9 cut(s)	109, 304, 337, 373, 376, 409, 418, 769, 831
PleI	GAGTC	5 cut(s)	20, 127, 370, 427, 459
PpsI	GAGTC	5 cut(s)	20, 127, 370, 427, 459
Ppu21I	YACGTR	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	161, 868
PspGI	CCWGG	2 cut(s)	161, 868
PspN4I	GGNNCC	3 cut(s)	760, 867, 939
PspPI	GGNCC	4 cut(s)	566, 866, 938, 948
PsrI	GAACNNNNNNTAC	2 cut(s)	572, 604
PstNI	CAGNNNCTG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	815
RsaI	GTAC	2 cut(s)	279, 296
RsaNI	GTAC	2 cut(s)	278, 295
SaqAI	TTAA	3 cut(s)	525, 714, 900
SatI	GCNGC	9 cut(s)	108, 303, 336, 372, 375, 408, 417, 768, 830
Sau3AI	GATC	3 cut(s)	312, 795, 978
Sau96I	GGNCC	4 cut(s)	566, 866, 938, 948
SchI	GAGTC	5 cut(s)	21, 127, 371, 427, 460
ScrFI	CCNGG	5 cut(s)	53, 163, 286, 287, 870
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	9 cut(s)	178, 189, 350, 426, 722, 793, 947, 989, 1029
SfaNI	GCATC	2 cut(s)	526, 647
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	1 cut(s)	866
SmaI	CCCGGG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SrfI	GCCCGGGC	1 cut(s)	287
Sse9I	AATT	5 cut(s)	4, 378, 438, 549, 892
SseBI	AGGCCT	1 cut(s)	727
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	5 cut(s)	51, 161, 284, 285, 868
StyI	CCWWGG	2 cut(s)	771, 941
TaaI	ACNGT	4 cut(s)	277, 343, 817, 886
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	5 cut(s)	63, 599, 734, 810, 959
TasI	AATT	5 cut(s)	4, 378, 438, 549, 892
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	4 cut(s)	110, 305, 377, 419
TfiI	GAWTC	5 cut(s)	26, 43, 481, 731, 1018
Tru1I	TTAA	3 cut(s)	525, 714, 900
Tru9I	TTAA	3 cut(s)	525, 714, 900
TscAI	CASTG	1 cut(s)	769
TseI	GCWGC	5 cut(s)	335, 371, 407, 767, 829
TspDTI	ATGAA	4 cut(s)	17, 35, 39, 240
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	1 cut(s)	769
Tth111I	GACNNNGTC	1 cut(s)	815
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	3 cut(s)	4, 549, 892
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 769
XmaI	CCCGGG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.