Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004723

Physical Location & Seq

Genomic Coordinates Reverse (-)

24028261 .. 24029313

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGCTTAAGAACAGCCGAGGATGATTCGGCTTCGGAGATTCATATCCCAGCCGATATAGATTGGCATATGCTTGACAAGTCCAAGTTTTTCTTTCTGGGTGCTGCTTTGTTTTCTGGTGTTTCAGCTGCTTTGTACCCAATTGTGGTCTTAAAGACTCGCCAGCAGGTCTCCCCTGCTCAAATCTCTAGCTTCAAGATGTCGTATTCCATCATGCGCCACGAGGGGCCGAAAGGGTTTTACCGAGGTTTTGGGACCTCTCTGATGGGTACCATTCCGGCCCGGGCTCTCTACATGACAGCTCTTGAAGTTACCAAGAGCAATGTTGGGAGTGTGACTGTGAAATTGGGGTTTTCGGATACTACTGCATTGGCTATCGCTAATGCTGCTGCAGGGGTGAGCTCGGCCATGGCTGCGCAGTTGGTTTGGACACCGATTGATGTTGTGAGCCAGAGACTTATGGTTCAGGGTTGTAGCTACAGCAACAAAAGCACCATCCCCAGTGCGAGTTCGTGTTCATATCAGTATAGGAATGGTTTCGATGCGTTTAGAAAAATTGTAGGCGCAGATGGGGTGAGAGGATTGTATAGGGGGTTTGGAATTTCGATACTAACTTATGCACCGTCTAATGCGGTTTGGTGGGCTTCTTACTCTGTGGCACACAGACTCATTTGGGGTGGTTTTGGTTGCTACATGTGCAAGAAAGATGAGAATGGCTCAGCCAATGGGTCGCCTAATCTTAAGCCTGATTGCAAGTCAATGTTGGCAGTTCAGGGGTTGAGTGCAGCCATGGCTAGTGGGGTTGCAGCTTTGATTACTATGCCTTTGGATACCGTCAAGACAAGGCTGCAAGTTTTGGATGGAGAGGAAAATGGTCAGAGAAGGCCATTAACAGTAATGCAGACTGTGAAGAATTTGGTTAGGGAAGGAGGGTTTGGTGCTTGTTACAGAGGACTAGGGCCAAGGTGGGCATCAATGGCTATGTCTGCCACAACCATGGTCACTACCTATGAGTTTCTCAAACGGATGTCAACTAAGAACCAAGTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

351

Amino Acids

37.75

Weight (kDa)

9.51

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 108	1.3e-13	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 225	2.5e-19	Mitochondrial carrier protein
Mito_carr	PF00153	257 - 346	2.5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72820 AT1G72820
fragaria_vesca	FvH4_2g31290 FvH4_6g34310
malus_domestica	MD08G1069000.v1.1 MD09G1186900.v1.1 MD15G1053000.v1.1
prunus_persica	Prupe.1G406900_v2.0.a1 Prupe.3G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0144681 RchiOBHm_Chr6g0311501
rosa_laevigata	RLG00000010400 RLG00000020100
rosa_multiflora	Rmu_co8360061.1_g000001 Rmu_co8488605.1_g000001 Rmu_sc0000227.1_g000008
rosa_roxburghii	Rroxscaffold_2G00101080 Rroxscaffold_2G00123070 Rroxscaffold_7G00157560
rosa_rugosa	Rorug02G0388700 Rorug06G0389300
rosa_samantha	Rh2AG440600 Rh2BG451000 Rh2CG427800 Rh2DG461000 Rh6AG504000 Rh6BG514600 Rh6CG520400 Rh6DG506500
rosa_wichuraiana	Rw2G036040 Rw6G043890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	600, 913
AfaI	GTAC	2 cut(s)	137, 271
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflII	CTTAAG	2 cut(s)	7, 740
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	2 cut(s)	196, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	918, 950
AluBI	AGCT	8 cut(s)	6, 128, 192, 302, 402, 477, 809, 1050
AluI	AGCT	8 cut(s)	6, 128, 192, 302, 402, 477, 809, 1050
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	2 cut(s)	175, 448
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	5 cut(s)	227, 279, 405, 884, 959
ApeKI	GCWGC	8 cut(s)	104, 128, 386, 389, 413, 785, 806, 847
ApoI	RAATTY	2 cut(s)	600, 913
Asp700I	GAANNNNTTC	1 cut(s)	536
Asp718I	GGTACC	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	219, 418, 566
AspS9I	GGNCC	4 cut(s)	227, 255, 280, 959
AsuC2I	CCSGG	2 cut(s)	283, 284
AsuHPI	GGTGA	2 cut(s)	409, 586
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	289, 404
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	8 cut(s)	91, 115, 373, 376, 400, 797, 818, 834
BccI	CCATC	5 cut(s)	218, 259, 503, 563, 854
BciVI	GTATCC	2 cut(s)	352, 823
BcnI	CCSGG	2 cut(s)	283, 284
BcoDI	GTCTC	2 cut(s)	175, 448
BfaI	CTAG	3 cut(s)	189, 795, 956
BfmI	CTRYAG	2 cut(s)	390, 478
BfrI	CTTAAG	2 cut(s)	7, 740
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	2 cut(s)	352, 823
BisI	GCNGC	8 cut(s)	105, 129, 387, 390, 414, 786, 807, 848
BlpI	GCTNAGC	1 cut(s)	718
BlsI	GCNGC	8 cut(s)	106, 130, 388, 391, 415, 787, 808, 849
Bme1390I	CCNGG	2 cut(s)	283, 284
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	4 cut(s)	227, 255, 280, 959
BmiI	GGNNCC	3 cut(s)	228, 256, 271
BmrFI	CCNGG	2 cut(s)	283, 284
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	532, 980
BmuI	ACTGGG	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
Bpu1102I	GCTNAGC	1 cut(s)	718
BpuMI	CCSGG	2 cut(s)	283, 284
BsaBI	GATNNNNATC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	7 cut(s)	18, 244, 282, 408, 789, 962, 996
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	7 cut(s)	18, 244, 282, 408, 789, 962, 996
BseGI	GGATG	4 cut(s)	28, 495, 865, 1032
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	1 cut(s)	501
BseXI	GCAGC	8 cut(s)	91, 115, 373, 376, 400, 797, 818, 834
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	804
BshFI	GGCC	5 cut(s)	229, 281, 407, 886, 961
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	278, 283
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	175, 448
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	5 cut(s)	229, 281, 407, 886, 961
Bso31I	GGTCTC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	289, 404
Bsp1720I	GCTNAGC	1 cut(s)	718
Bsp19I	CCATGG	3 cut(s)	408, 789, 996
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	5 cut(s)	229, 281, 407, 886, 961
BspCNI	CTCAG	1 cut(s)	731
BspLI	GGNNCC	3 cut(s)	228, 256, 271
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	269
BspTI	CTTAAG	2 cut(s)	7, 740
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	7 cut(s)	18, 244, 282, 408, 789, 962, 996
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	4 cut(s)	408, 789, 962, 996
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	5 cut(s)	340, 624, 835, 895, 907
BstAFI	CTTAAG	2 cut(s)	7, 740
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	718, 1035
BstDSI	CCRYGG	3 cut(s)	408, 789, 996
BstF5I	GGATG	4 cut(s)	28, 495, 865, 1032
BstHHI	GCGC	3 cut(s)	219, 418, 566
BstMAI	GTCTC	2 cut(s)	175, 448
BstMWI	GCNNNNNNNGC	7 cut(s)	386, 413, 489, 696, 791, 977, 986
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	2 cut(s)	281, 282
BstSFI	CTRYAG	2 cut(s)	390, 478
BstV1I	GCAGC	8 cut(s)	91, 115, 373, 376, 400, 797, 818, 834
BstXI	CCANNNNNNTGG	1 cut(s)	997
BsuI	GTATCC	2 cut(s)	352, 823
BsuRI	GGCC	5 cut(s)	229, 281, 407, 886, 961
BtgI	CCRYGG	3 cut(s)	408, 789, 996
BtsCI	GGATG	4 cut(s)	28, 495, 865, 1032
BtsIMutI	CAGTG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	3 cut(s)	219, 418, 566
Cfr13I	GGNCC	4 cut(s)	227, 255, 280, 959
Cfr9I	CCCGGG	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	136, 270
CviAII	CATG	6 cut(s)	214, 295, 409, 694, 790, 997
CviQI	GTAC	2 cut(s)	136, 270
DdeI	CTNAG	2 cut(s)	718, 1035
EaeI	YGGCCR	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	4 cut(s)	408, 789, 962, 996
Eco24I	GRGCYC	2 cut(s)	289, 404
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	255
EcoT14I	CCWWGG	4 cut(s)	408, 789, 962, 996
EcoT38I	GRGCYC	2 cut(s)	289, 404
ErhI	CCWWGG	4 cut(s)	408, 789, 962, 996
FaeI	CATG	6 cut(s)	217, 298, 412, 697, 793, 1000
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	6 cut(s)	213, 294, 408, 693, 789, 996
FauNDI	CATATG	1 cut(s)	69
Fnu4HI	GCNGC	8 cut(s)	105, 129, 387, 390, 414, 786, 807, 848
FokI	GGATG	4 cut(s)	35, 482, 872, 1039
FriOI	GRGCYC	2 cut(s)	289, 404
Fsp4HI	GCNGC	8 cut(s)	105, 129, 387, 390, 414, 786, 807, 848
FspBI	CTAG	3 cut(s)	189, 795, 956
FspI	TGCGCA	1 cut(s)	417
GlaI	GCGC	3 cut(s)	218, 417, 565
GluI	GCNGC	8 cut(s)	105, 129, 387, 390, 414, 786, 807, 848
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	5 cut(s)	229, 281, 407, 886, 961
HapII	CCGG	2 cut(s)	278, 283
HhaI	GCGC	3 cut(s)	219, 418, 566
Hin1II	CATG	6 cut(s)	217, 298, 412, 697, 793, 1000
Hin6I	GCGC	3 cut(s)	217, 416, 564
HinP1I	GCGC	3 cut(s)	217, 416, 564
HincII	GTYRAC	1 cut(s)	1032
HindII	GTYRAC	1 cut(s)	1032
HinfI	GANTC	4 cut(s)	26, 40, 157, 666
HpaII	CCGG	2 cut(s)	278, 283
HphI	GGTGA	2 cut(s)	409, 586
Hpy166II	GTNNAC	1 cut(s)	1032
Hpy188I	TCNGA	4 cut(s)	37, 264, 358, 879
Hpy188III	TCNNGA	3 cut(s)	196, 305, 838
Hpy8I	GTNNAC	1 cut(s)	1032
HpyAV	CCTTC	2 cut(s)	876, 920
HpyCH4III	ACNGT	5 cut(s)	340, 624, 835, 895, 907
HpyCH4V	TGCA	9 cut(s)	368, 392, 620, 699, 753, 785, 806, 850, 901
HpyF10VI	GCNNNNNNNGC	7 cut(s)	386, 413, 489, 696, 791, 977, 986
HpyF3I	CTNAG	2 cut(s)	718, 1035
Hsp92II	CATG	6 cut(s)	217, 298, 412, 697, 793, 1000
HspAI	GCGC	3 cut(s)	217, 416, 564
KpnI	GGTACC	1 cut(s)	273
Lsp1109I	GCAGC	8 cut(s)	91, 115, 373, 376, 400, 797, 818, 834
LweI	GCATC	2 cut(s)	532, 980
MaeI	CTAG	3 cut(s)	189, 795, 956
MaeIII	GTNAC	4 cut(s)	310, 334, 944, 1000
MboII	GAAGA	1 cut(s)	922
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	289, 404
MluCI	AATT	5 cut(s)	141, 344, 555, 600, 913
MlyI	GAGTC	2 cut(s)	151, 660
MnlI	CCTC	8 cut(s)	13, 217, 239, 268, 572, 859, 923, 944
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	4 cut(s)	8, 152, 741, 890
MslI	CAYNNNNRTG	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	2 cut(s)	7, 740
MspI	CCGG	2 cut(s)	278, 283
MspR9I	CCNGG	2 cut(s)	283, 284
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	7 cut(s)	386, 413, 489, 696, 791, 977, 986
NciI	CCSGG	2 cut(s)	283, 284
NcoI	CCATGG	3 cut(s)	408, 789, 996
NdeI	CATATG	1 cut(s)	69
NlaIII	CATG	6 cut(s)	217, 298, 412, 697, 793, 1000
NlaIV	GGNNCC	3 cut(s)	228, 256, 271
NmeAIII	GCCGAG	2 cut(s)	43, 383
NmuCI	GTSAC	2 cut(s)	334, 1000
NsbI	TGCGCA	1 cut(s)	417
NspI	RCATGY	1 cut(s)	697
PciI	ACATGT	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	26, 40
PkrI	GCNGC	8 cut(s)	106, 130, 388, 391, 415, 787, 808, 849
PleI	GAGTC	2 cut(s)	151, 660
PpsI	GAGTC	2 cut(s)	151, 660
PpuMI	RGGWCCY	1 cut(s)	255
PscI	ACATGT	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	228, 256, 271
PspPI	GGNCC	4 cut(s)	227, 255, 280, 959
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	2 cut(s)	137, 271
RsaNI	GTAC	2 cut(s)	136, 270
RseI	CAYNNNNRTG	1 cut(s)	995
SacI	GAGCTC	1 cut(s)	404
SaqAI	TTAA	4 cut(s)	8, 152, 741, 890
SatI	GCNGC	8 cut(s)	105, 129, 387, 390, 414, 786, 807, 848
Sau96I	GGNCC	4 cut(s)	227, 255, 280, 959
SchI	GAGTC	2 cut(s)	151, 660
ScrFI	CCNGG	2 cut(s)	283, 284
SduI	GDGCHC	2 cut(s)	289, 404
SfaNI	GCATC	2 cut(s)	532, 980
SfcI	CTRYAG	2 cut(s)	390, 478
SinI	GGWCC	1 cut(s)	255
SmaI	CCCGGG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	995
SmlI	CTYRAG	2 cut(s)	7, 740
SmoI	CTYRAG	2 cut(s)	7, 740
SrfI	GCCCGGGC	1 cut(s)	284
Sse9I	AATT	5 cut(s)	141, 344, 555, 600, 913
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	3 cut(s)	189, 795, 956
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	281, 282
StyI	CCWWGG	4 cut(s)	408, 789, 962, 996
TaaI	ACNGT	5 cut(s)	340, 624, 835, 895, 907
TaqI	TCGA	2 cut(s)	540, 605
TasI	AATT	5 cut(s)	141, 344, 555, 600, 913
TfiI	GAWTC	2 cut(s)	26, 40
Tru1I	TTAA	4 cut(s)	8, 152, 741, 890
Tru9I	TTAA	4 cut(s)	8, 152, 741, 890
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	2 cut(s)	334, 1000
TseI	GCWGC	8 cut(s)	104, 128, 386, 389, 413, 785, 806, 847
Tsp45I	GTSAC	2 cut(s)	334, 1000
TspDTI	ATGAA	2 cut(s)	32, 507
TspGWI	ACGGA	1 cut(s)	1039
TspMI	CCCGGG	1 cut(s)	282
TspRI	CASTG	1 cut(s)	508
Vha464I	CTTAAG	2 cut(s)	7, 740
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	600, 913
XceI	RCATGY	1 cut(s)	697
XmaI	CCCGGG	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	3 cut(s)	189, 795, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.