Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Reverse (-)

27575377 .. 27577283

Gene Structure 1907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAGGGAGAGAAGTTAAAGAATACACAAATCTGTCTGACCCTAAAGATAAGAAATCAGGGAAAGGTAAGATTGATGATGAAGACGTCACCTTTCAACGAATGGTTGCAAAGATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGAGGCGATAGCGACGATTTACTTTATCTGAAAGAACAGATGGAAGCAGAGGAAGATGCAGAACGTCTTCTGAGACGAACTGAGAAACGGGCTTTTGCTGCCTTTAAAAAAGCTGCAACCCAAGCTGATTCATCTCCAGCATCTATTCCCTTGCCACTTCGTGTGGAGCCCAAACCAAAGAGTGGTATCAGGCAGCAAGATTTGCTGAGGAAAGTTGTAGAGGTTAAACCTAAACGTCCAAAGATCTCAACACCATCAAGCCCAAGCTTATCTCCCCCTGTTAGAAGTGATAGAGGTCCAACAGAGGCAAAAGTTCACAGAGATAAGCAGAAAGAAGAAGCTATGCCAGTGTTGAAGAAACCTGGCGCAGACAGAAATGACGGAAAAGCTACGGAAAGCAATGGGCAAGGTCAAAATGCTCCGAAAGGCTTGTTGGGATTAGCATATGATAGTTCAGATGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

8.89

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	98, 511
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	5 cut(s)	269, 281, 423, 497, 545
AluI	AGCT	5 cut(s)	269, 281, 423, 497, 545
Alw26I	GTCTC	1 cut(s)	223
ApeKI	GCWGC	3 cut(s)	254, 269, 349
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	82, 143
AvaII	GGWCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	90, 215
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	241, 256, 361
BccI	CCATC	2 cut(s)	190, 418
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	3 cut(s)	255, 270, 350
BlsI	GCNGC	3 cut(s)	256, 271, 351
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	105, 202, 305
BpiI	GAAGAC	2 cut(s)	90, 215
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	3 cut(s)	218, 228, 353
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	3 cut(s)	241, 256, 361
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	399
BspCNI	CTCAG	3 cut(s)	219, 229, 354
BspLI	GGNNCC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	503
BssMI	GATC	1 cut(s)	399
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	227, 237, 362
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 278, 358
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	241, 256, 361
BstV2I	GAAGAC	2 cut(s)	90, 215
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	510
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	452
CviAII	CATG	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	227, 237, 362
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DraI	TTTAAA	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	153, 500, 601, 603
FatI	CATG	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	255, 270, 350
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	255, 270, 350
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	3 cut(s)	255, 270, 350
GsuI	CTGGAG	1 cut(s)	276
HhaI	GCGC	1 cut(s)	524
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	1 cut(s)	284
HphI	GGTGA	2 cut(s)	82, 143
Hpy166II	GTNNAC	2 cut(s)	134, 472
Hpy188I	TCNGA	5 cut(s)	40, 186, 228, 579, 613
Hpy8I	GTNNAC	2 cut(s)	134, 472
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4IV	ACGT	4 cut(s)	87, 136, 220, 391
HpyCH4V	TGCA	4 cut(s)	110, 118, 215, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 278, 358
HpyF3I	CTNAG	3 cut(s)	227, 237, 362
HpySE526I	ACGT	4 cut(s)	87, 136, 220, 391
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	322, 580
LpnPI	CCDG	8 cut(s)	45, 114, 306, 331, 447, 504, 516, 531
Lsp1109I	GCAGC	3 cut(s)	241, 256, 361
LweI	GCATC	3 cut(s)	105, 202, 305
MaeII	ACGT	4 cut(s)	87, 136, 220, 391
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	6 cut(s)	95, 140, 215, 221, 503, 523
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	8 cut(s)	115, 134, 152, 199, 357, 370, 443, 454
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	3 cut(s)	18, 261, 381
MspR9I	CCNGG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	254, 278, 358
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	256, 271, 351
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	18, 261, 381
SatI	GCNGC	3 cut(s)	255, 270, 350
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	105, 202, 305
SinI	GGWCC	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	517
TaiI	ACGT	4 cut(s)	90, 139, 223, 394
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	18, 261, 381
Tru9I	TTAA	3 cut(s)	18, 261, 381
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	254, 269, 349
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	96, 140, 276
TspGWI	ACGGA	2 cut(s)	552, 563
TspRI	CASTG	1 cut(s)	510
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.