Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Forward (+)

34095305 .. 34097809

Gene Structure 2505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCAGGCAGAGAAGTTCGAGAATACACCAATCTCACAGACCCTAAAGATAAAAAATGGGGGAAAGGGAAGGATAAGGTGGACGATGAAGACGTCACCTTCCAACGCATGGTTGCAAAGATGCAAGAGGTTGCAGGAGAACGTGGAGGTTACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTATTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAACGCCTCCTTCGTCGCACTGAGAAACGAGCATTTGCTGCATTTAAGATATCCTTTTATGAAATTGCTTCTATTTACTTAACCAATGCATACCAAGCTGCAAGTCTGGCAGATTCTTCACCTGCATCGGCTCCCTTGACACTTCGTGTTGAGCCCAAACAAAAGAGTGGGATTAGACAGCAAGATCTACTGAAAAAGGTGGTAGAAGTTAAACCCAAAAAGCAGAAAGTTGCAAGTCCATCTAATGGTAATCAGTTGTCCCTCTCCCAAAAGAATGTTGGTGCTTCTTCGACAAATCTTAAGCCTGAATCTGACCAGGACAAGGACAAGGTGCATTTGTCATCACCATCTTCCAAAATAGATGGTGAGTCCAAGGTGGAAACTACTGCCCAAAGCTTATTAGGCTTAGCATATGCAAGCTCTGACGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.42

Weight (kDa)

5.88

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	109, 473
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	93, 168
AdeI	CACNNNGTG	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	109, 473, 550
AflII	CTTAAG	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	4 cut(s)	215, 326, 624, 648
AluI	AGCT	4 cut(s)	215, 326, 624, 648
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	266, 326
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	4 cut(s)	88, 339, 564, 605
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	253, 313
BccI	CCATC	4 cut(s)	202, 475, 583, 584
BciT130I	CCWGG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	2 cut(s)	267, 327
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	2 cut(s)	268, 328
Bme1390I	CCNGG	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	169, 360
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	3 cut(s)	111, 214, 362
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	93, 168
BsaJI	CCNNGG	3 cut(s)	163, 171, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 473, 550
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	3 cut(s)	163, 171, 600
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	109, 473, 550
BseMII	CTCAG	2 cut(s)	207, 240
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	253, 313
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	109, 473, 550
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	634
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	208, 241
BspLI	GGNNCC	2 cut(s)	169, 360
BspMI	ACCTGC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	527
BssECI	CCNNGG	3 cut(s)	163, 171, 600
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	2 cut(s)	93, 168
BssT1I	CCWWGG	2 cut(s)	171, 600
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	2 cut(s)	93, 168
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	7, 646
BstDEI	CTNAG	3 cut(s)	216, 249, 634
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 323, 335, 630
BstNI	CCWGG	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	253, 313
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	184, 246
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	7, 646
CfoI	GCGC	1 cut(s)	170
CviAII	CATG	2 cut(s)	109, 158
CviJI	RGCY	9 cut(s)	162, 215, 326, 359, 382, 532, 624, 633, 648
CviKI_1	RGCY	9 cut(s)	162, 215, 326, 359, 382, 532, 624, 633, 648
DdeI	CTNAG	3 cut(s)	216, 249, 634
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
DraIII	CACNNNGTG	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	171, 600
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	543
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	171, 600
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	171, 600
FaeI	CATG	2 cut(s)	112, 161
FaiI	YATR	7 cut(s)	110, 159, 193, 288, 319, 640, 642
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	108, 157
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	267, 327
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	267, 327
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	267, 327
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	93, 168
Hin1II	CATG	2 cut(s)	112, 161
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	3 cut(s)	341, 536, 596
HphI	GGTGA	4 cut(s)	88, 339, 564, 605
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	541, 652
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	64, 109, 164, 248
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	93, 142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 323, 335, 630
HpyF3I	CTNAG	3 cut(s)	216, 249, 634
HpySE526I	ACGT	2 cut(s)	93, 142
Hsp92I	GRCGYC	2 cut(s)	93, 168
Hsp92II	CATG	2 cut(s)	112, 161
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	202, 364
LpnPI	CCDG	6 cut(s)	120, 320, 363, 530, 546, 557
Lsp1109I	GCAGC	2 cut(s)	253, 313
LweI	GCATC	3 cut(s)	111, 214, 362
MaeII	ACGT	2 cut(s)	93, 142
MaeIII	GTNAC	2 cut(s)	94, 149
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	4 cut(s)	101, 336, 507, 570
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	121, 140, 158, 211, 214, 245, 500
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	5 cut(s)	273, 308, 438, 528, 664
MspCI	CTTAAG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	4 cut(s)	266, 323, 335, 630
NarI	GGCGCC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	112, 161
NlaIV	GGNNCC	2 cut(s)	169, 360
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 238
PfeI	GAWTC	2 cut(s)	341, 536
PflMI	CCANNNNNTGG	2 cut(s)	109, 473
PkrI	GCNGC	2 cut(s)	268, 328
PleI	GAGTC	1 cut(s)	604
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	2 cut(s)	169, 360
PsuI	RGATCY	1 cut(s)	412
SaqAI	TTAA	5 cut(s)	273, 308, 438, 528, 664
SatI	GCNGC	2 cut(s)	267, 327
Sau3AI	GATC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	111, 214, 362
SfoI	GGCGCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	197, 527
SmoI	CTYRAG	2 cut(s)	197, 527
Sse9I	AATT	1 cut(s)	291
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	2 cut(s)	171, 600
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	96, 145
TaqI	TCGA	2 cut(s)	19, 518
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	341, 536
Tru1I	TTAA	5 cut(s)	273, 308, 438, 528, 664
Tru9I	TTAA	5 cut(s)	273, 308, 438, 528, 664
TscAI	CASTG	2 cut(s)	184, 253
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	266, 326
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	102, 146, 303
TspRI	CASTG	2 cut(s)	184, 253
Van91I	CCANNNNNTGG	2 cut(s)	109, 473
Vha464I	CTTAAG	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.