Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Forward (+)

25296 .. 26724

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1000100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGGCAGAGAAGTTCGAGAGTACACCAATCTCACCGACCCAAAAGATAAGAAGTGGGGGAAAGGGAAGGATAAGATCGACGACGAAGACATCACATTCCAACGCATGGTCGCCAAGATGCAAGAGGTTGCAGGAGAACGCGGAGGATACCTTCATGGCCGAGGCGGTACTCTCTCTCCCCCCCTCTCTCCCCCTCTCATGTGCATTCAGGGCACACACAACAACTACATTAAGCATCTCTGTTTCTATGTCTCTACATGTGTGCTTGAAGCCTTGAACCCACAAGTGGATTCAGGCACACGACAGCCCATTTTGAATCTCTGTATGTTTAGCTCTTTACTTTATTGCAATCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

7.63

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	144, 168
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	2 cut(s)	26, 172
AfiI	CCNNNNNNNGG	2 cut(s)	109, 289
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	272, 280, 319
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	96
BciVI	GTATCC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	143
BmsI	GCATC	2 cut(s)	111, 247
BpiI	GAAGAC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 289
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	109, 289
BseSI	GKGCMC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	109, 289
BsmAI	GTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	144, 168
BspANI	GGCC	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	7
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	25, 171
CviAII	CATG	4 cut(s)	109, 158, 202, 261
CviJI	RGCY	4 cut(s)	162, 275, 310, 336
CviKI_1	RGCY	4 cut(s)	162, 275, 310, 336
CviQI	GTAC	2 cut(s)	25, 171
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	160
FaeI	CATG	4 cut(s)	112, 161, 205, 264
FaiI	YATR	6 cut(s)	110, 159, 203, 252, 262, 329
FatI	CATG	4 cut(s)	108, 157, 201, 260
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	112, 161, 205, 264
HinfI	GANTC	2 cut(s)	293, 319
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	2 cut(s)	64, 164
HpyCH4V	TGCA	4 cut(s)	124, 134, 207, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	112, 161, 205, 264
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	3 cut(s)	120, 197, 282
LweI	GCATC	2 cut(s)	111, 247
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	5 cut(s)	121, 140, 158, 197, 207
MseI	TTAA	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	207
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	4 cut(s)	112, 161, 205, 264
NmeAIII	GCCGAG	1 cut(s)	188
NspI	RCATGY	1 cut(s)	264
PciI	ACATGT	1 cut(s)	260
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	293, 319
PflMI	CCANNNNNTGG	1 cut(s)	109
PscI	ACATGT	1 cut(s)	260
RsaI	GTAC	2 cut(s)	26, 172
RsaNI	GTAC	2 cut(s)	25, 171
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	3 cut(s)	132, 156, 338
SfaNI	GCATC	2 cut(s)	111, 247
SsiI	CCGC	2 cut(s)	144, 168
TaqI	TCGA	2 cut(s)	19, 81
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	293, 319
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	109
XceI	RCATGY	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.