Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Forward (+)

36962766 .. 36967286

Gene Structure 4521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG333300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCAGGCAGAGAAGTTCGAGAATACACCAATCTCACAGACCCTAAAGATAAAAAATGGGGGAAGGGGAAGGATAAGGTGGACGATGAAGACGTCACCTTCCAACGCATGGTTGCAAAGATGCAAGAGGTTGCAGGAGAACGTGGAGGTTACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTATTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAACGCCTCCTTCGTCGCACTGAGAAACGAGCATTTGCTGCATTTAAGCAAGCTGCAAGTCTGGCAGATTCTTCACCTGCATCGGCTCCCTTGACACTTCGTGTTGAGCCCAAACAAAAGAGTGGGATTAGACAGCAAGATCTACTGAAAAAGGTGGTAGAAGTTAAACCCAAAAAGCAGAAAGTTGCAAGTCCATCTAATGGTATTCAGTTGTCCCTCTCCCAAAAGAATGTTGGTGCTTCTTCGATAAATCTTAAGCCTGAATCTGACCAGGACAAGGACAAGGTGCATTTGTCATCACCATCTTCCAAAATAGATGGTGAGTCCAAGGTGGAAACTACTGCCCAAAGCTTATTAGGCTTAGCATATGCAAGCTCTGACGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.68

Weight (kDa)

6.23

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	109, 428
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	93, 168
AdeI	CACNNNGTG	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	109, 428, 505
AflII	CTTAAG	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	215, 281, 579, 603
AluI	AGCT	4 cut(s)	215, 281, 579, 603
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	266, 281
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	4 cut(s)	88, 294, 519, 560
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	253, 268
BccI	CCATC	4 cut(s)	202, 430, 538, 539
BciT130I	CCWGG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	267, 282
BlpI	GCTNAGC	1 cut(s)	589
BlsI	GCNGC	2 cut(s)	268, 283
Bme1390I	CCNGG	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	169, 315
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	3 cut(s)	111, 214, 317
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	93, 168
BsaJI	CCNNGG	3 cut(s)	163, 171, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 428, 505
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	3 cut(s)	163, 171, 555
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	109, 428, 505
BseMII	CTCAG	2 cut(s)	207, 240
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	253, 268
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	109, 428, 505
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	367
Bsp1720I	GCTNAGC	1 cut(s)	589
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	208, 241
BspLI	GGNNCC	2 cut(s)	169, 315
BspMI	ACCTGC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	163, 171, 555
BssMI	GATC	1 cut(s)	367
BssNI	GRCGYC	2 cut(s)	93, 168
BssT1I	CCWWGG	2 cut(s)	171, 555
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	2 cut(s)	93, 168
BstAFI	CTTAAG	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	7, 279, 601
BstDEI	CTNAG	3 cut(s)	216, 249, 589
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 290, 585
BstNI	CCWGG	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	253, 268
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	184, 246
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	7, 279, 601
CfoI	GCGC	1 cut(s)	170
CviAII	CATG	2 cut(s)	109, 158
CviJI	RGCY	9 cut(s)	162, 215, 281, 314, 337, 487, 579, 588, 603
CviKI_1	RGCY	9 cut(s)	162, 215, 281, 314, 337, 487, 579, 588, 603
DdeI	CTNAG	3 cut(s)	216, 249, 589
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	171, 555
Eco24I	GRGCYC	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	2 cut(s)	171, 555
EcoT38I	GRGCYC	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	171, 555
FaeI	CATG	2 cut(s)	112, 161
FaiI	YATR	5 cut(s)	110, 159, 193, 595, 597
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	2 cut(s)	108, 157
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	267, 282
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	2 cut(s)	267, 282
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	267, 282
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	93, 168
Hin1II	CATG	2 cut(s)	112, 161
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	3 cut(s)	296, 491, 551
HphI	GGTGA	4 cut(s)	88, 294, 519, 560
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	496, 607
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	5 cut(s)	58, 64, 109, 164, 248
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	93, 142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 290, 585
HpyF3I	CTNAG	3 cut(s)	216, 249, 589
HpySE526I	ACGT	2 cut(s)	93, 142
Hsp92I	GRCGYC	2 cut(s)	93, 168
Hsp92II	CATG	2 cut(s)	112, 161
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	202, 319
LpnPI	CCDG	6 cut(s)	120, 275, 318, 485, 501, 512
Lsp1109I	GCAGC	2 cut(s)	253, 268
LweI	GCATC	3 cut(s)	111, 214, 317
MaeII	ACGT	2 cut(s)	93, 142
MaeIII	GTNAC	2 cut(s)	94, 149
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	4 cut(s)	101, 291, 462, 525
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	339
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	121, 140, 158, 211, 214, 245, 455
MseI	TTAA	4 cut(s)	273, 393, 483, 619
MspCI	CTTAAG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	266, 290, 585
NarI	GGCGCC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	112, 161
NlaIV	GGNNCC	2 cut(s)	169, 315
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 238
PfeI	GAWTC	2 cut(s)	296, 491
PflMI	CCANNNNNTGG	2 cut(s)	109, 428
PkrI	GCNGC	2 cut(s)	268, 283
PleI	GAGTC	1 cut(s)	559
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	498
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	169, 315
PsuI	RGATCY	1 cut(s)	367
SaqAI	TTAA	4 cut(s)	273, 393, 483, 619
SatI	GCNGC	2 cut(s)	267, 282
Sau3AI	GATC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	3 cut(s)	111, 214, 317
SfoI	GGCGCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	197, 482
SmoI	CTYRAG	2 cut(s)	197, 482
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	2 cut(s)	171, 555
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	96, 145
TaqI	TCGA	2 cut(s)	19, 473
TfiI	GAWTC	2 cut(s)	296, 491
Tru1I	TTAA	4 cut(s)	273, 393, 483, 619
Tru9I	TTAA	4 cut(s)	273, 393, 483, 619
TscAI	CASTG	2 cut(s)	184, 253
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	266, 281
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	102, 146
TspRI	CASTG	2 cut(s)	184, 253
Van91I	CCANNNNNTGG	2 cut(s)	109, 428
Vha464I	CTTAAG	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.