Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Forward (+)

18380910 .. 18383821

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27080.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTAATACTGTTTCTTATCATTAGCAGACATCCTGCTGGTATTGAGGTTTATTTGCAAAAGAATGCAAGATTGCACATTTCTGTCTATGTTGAATCCTTGATGCATGTTTTTGAGGTTTATGTTTATTCTCCCTCTTCTATCTTAGTTTACTTAACCAATGCACACAAAGCTGCAAGTTTGGCAGATTCTTCACCTGTATCGGCTCCCTTGACACTTCGTGTAGAGCCCAAACAAAAAAGTGGGATTAGACAACAAGATCTACTGAAAAAGGTGGTAGAAATTAAACCGAAAAAGCAGAAAGTTGCAAGTCCATCTAATGGTAATCAGTTGTCCCTCCCCCAAAAGAATGTTGGTGCTACTTCAACAAACCTTAAGCCTGAATCTGACCTGGACAAGGACAAAGCGCATTTGTCATCACCATCGATCAAAACAGATGATGAGTCTAAGGTGGAAACTACTTCACAAAGCTTGTTAGGCTTAGCATATGCATGTTCTGATGACGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.63

Weight (kDa)

7.82

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	320, 397
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	95, 366
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	173, 471
AluI	AGCT	2 cut(s)	173, 471
ApeKI	GCWGC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	186, 411
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	322, 430
BciT130I	CCWGG	1 cut(s)	392
BfrI	CTTAAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	481
Bsa29I	ATCGAT	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 397
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	425
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	320, 397
BseXI	GCAGC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	320, 397
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	259, 426
Bsp1720I	GCTNAGC	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	374
BssMI	GATC	2 cut(s)	259, 426
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	145, 447, 481
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	262, 429
BstMBI	GATC	2 cut(s)	259, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 182, 477
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	110, 495
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	425
BsuTUI	ATCGAT	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	425
CviAII	CATG	2 cut(s)	107, 492
CviJI	RGCY	6 cut(s)	173, 206, 229, 379, 471, 480
CviKI_1	RGCY	6 cut(s)	173, 206, 229, 379, 471, 480
DdeI	CTNAG	3 cut(s)	145, 447, 481
DpnI	GATC	2 cut(s)	261, 428
DpnII	GATC	2 cut(s)	259, 426
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	390
EcoT22I	ATGCAT	2 cut(s)	108, 493
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	110, 495
FaiI	YATR	6 cut(s)	90, 108, 123, 487, 489, 493
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	106, 491
FauNDI	CATATG	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	110, 495
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	4 cut(s)	95, 188, 383, 443
HphI	GGTGA	2 cut(s)	186, 411
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	388, 499
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	8 cut(s)	58, 68, 76, 106, 164, 176, 308, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 182, 477
HpyF3I	CTNAG	3 cut(s)	145, 447, 481
Hsp92II	CATG	2 cut(s)	110, 495
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	259, 426
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	6 cut(s)	24, 48, 210, 377, 393, 404
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	93
MalI	GATC	2 cut(s)	261, 428
MboI	GATC	2 cut(s)	259, 426
MboII	GAAGA	2 cut(s)	129, 183
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	4 cut(s)	40, 109, 145, 347
Mph1103I	ATGCAT	2 cut(s)	108, 493
MseI	TTAA	4 cut(s)	155, 285, 375, 511
MslI	CAYNNNNRTG	1 cut(s)	490
MspCI	CTTAAG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	170, 182, 477
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	2 cut(s)	259, 426
NlaIII	CATG	2 cut(s)	110, 495
NlaIV	GGNNCC	1 cut(s)	207
NsiI	ATGCAT	2 cut(s)	108, 493
NspI	RCATGY	2 cut(s)	110, 495
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	95, 188, 383
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	490
SaqAI	TTAA	4 cut(s)	155, 285, 375, 511
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	259, 426
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	51, 120, 175, 199, 276, 375, 393, 453, 473
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	425
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	95, 188, 383
Tru1I	TTAA	4 cut(s)	155, 285, 375, 511
Tru9I	TTAA	4 cut(s)	155, 285, 375, 511
TseI	GCWGC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	395
XceI	RCATGY	2 cut(s)	110, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
Zsp2I	ATGCAT	2 cut(s)	108, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.