Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Forward (+)

29237793 .. 29240261

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG306400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAGGCAGAGAAGTTCGAGAATACACCAATCTCACAGACCCTAAAGATAAAAAATGGGGGAAAGGGAAGGATAAGGTAGACGACGAAGACGTCACCTTCCAACGCATGGTTGCAAAGATGCAAGAGGTTGCAGGAGAACGTGGAGGTTACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTATTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAACGCCTCCTTCGTCGCACTGAGAAACGAGCATTTGCTGCATTTAAGATATCCTTTTATGAAATTGCTTCTACTGCAAGTCTGGCAGATTCTTCACCTGCATCGGCTCCCTTGACACTTCGTGTTGAGCCCAAACAAAAGAGTGGGATTAGACAGCAAGATTTACTGAAAAAGGTGGTAGAAGTTAAACCCAAAAAGCAGAAAGTTGCAAGTCCATCTAATGGTACTCAGTTACCCCTCTCCCAAAAGAATGTTGGTGCTTCTTCGACAAATCTTAAGCCTGAATCTGACCAGGACAAGGACAAGGTGCATTTGTCATCACCATCTTCCAAAATAGATGGTGAGTCCAAGGTGGAAACTACTGCCCAAAGCTTATTAGGCTTAGCATATGCAAGCTCTGACGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.48

Weight (kDa)

5.88

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
AasI	GACNNNNNNGTC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	109, 449
AccI	GTMKAC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	93, 168
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	3 cut(s)	109, 449, 526
AflII	CTTAAG	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	3 cut(s)	215, 600, 624
AluI	AGCT	3 cut(s)	215, 600, 624
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	4 cut(s)	88, 315, 540, 581
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	202, 451, 559, 560
BciT130I	CCWGG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	610
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	169, 336
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	3 cut(s)	111, 214, 338
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	93, 168
BsaJI	CCNNGG	3 cut(s)	163, 171, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 449, 526
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	163, 171, 576
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	109, 449, 526
BseMII	CTCAG	3 cut(s)	207, 240, 470
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	109, 449, 526
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp1720I	GCTNAGC	1 cut(s)	610
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	3 cut(s)	208, 241, 469
BspLI	GGNNCC	2 cut(s)	169, 336
BspMI	ACCTGC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	163, 171, 576
BssNI	GRCGYC	2 cut(s)	93, 168
BssT1I	CCWWGG	2 cut(s)	171, 576
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	2 cut(s)	93, 168
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	7, 622
BstDEI	CTNAG	4 cut(s)	216, 249, 456, 610
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 302, 311, 606
BstNI	CCWGG	1 cut(s)	521
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	184, 246
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	7, 622
CfoI	GCGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	109, 158
CviJI	RGCY	8 cut(s)	162, 215, 335, 358, 508, 600, 609, 624
CviKI_1	RGCY	8 cut(s)	162, 215, 335, 358, 508, 600, 609, 624
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	4 cut(s)	216, 249, 456, 610
DinI	GGCGCC	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	350
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	171, 576
Eco24I	GRGCYC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	171, 576
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	171, 576
FaeI	CATG	2 cut(s)	112, 161
FaiI	YATR	6 cut(s)	110, 159, 193, 288, 616, 618
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	2 cut(s)	108, 157
FauNDI	CATATG	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	267
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	93, 168
Hin1II	CATG	2 cut(s)	112, 161
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	3 cut(s)	317, 512, 572
HphI	GGTGA	4 cut(s)	88, 315, 540, 581
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	517, 628
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	2 cut(s)	89, 246
HpyAV	CCTTC	4 cut(s)	64, 109, 164, 248
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	93, 142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 302, 311, 606
HpyF3I	CTNAG	4 cut(s)	216, 249, 456, 610
HpySE526I	ACGT	2 cut(s)	93, 142
Hsp92I	GRCGYC	2 cut(s)	93, 168
Hsp92II	CATG	2 cut(s)	112, 161
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	202, 340
LpnPI	CCDG	6 cut(s)	120, 296, 339, 506, 522, 533
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	111, 214, 338
MaeII	ACGT	2 cut(s)	93, 142
MaeIII	GTNAC	3 cut(s)	94, 149, 459
MboII	GAAGA	4 cut(s)	101, 312, 483, 546
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	121, 140, 158, 211, 214, 245, 476
MseI	TTAA	4 cut(s)	273, 414, 504, 640
MspCI	CTTAAG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	4 cut(s)	266, 302, 311, 606
NarI	GGCGCC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	616
NlaIII	CATG	2 cut(s)	112, 161
NlaIV	GGNNCC	2 cut(s)	169, 336
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 238
PfeI	GAWTC	2 cut(s)	317, 512
PflMI	CCANNNNNTGG	2 cut(s)	109, 449
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	580
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	519
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	169, 336
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	273, 414, 504, 640
SatI	GCNGC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	111, 214, 338
SfoI	GGCGCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	197, 503
SmoI	CTYRAG	2 cut(s)	197, 503
Sse9I	AATT	1 cut(s)	291
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	171, 576
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	96, 145
TaqI	TCGA	2 cut(s)	19, 494
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	317, 512
Tru1I	TTAA	4 cut(s)	273, 414, 504, 640
Tru9I	TTAA	4 cut(s)	273, 414, 504, 640
TscAI	CASTG	2 cut(s)	184, 253
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	146, 303
TspRI	CASTG	2 cut(s)	184, 253
Van91I	CCANNNNNTGG	2 cut(s)	109, 449
Vha464I	CTTAAG	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.