Rorug07G0173800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002100
Physical Location & Seq
Forward (+)
14249849 .. 14251434
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0173800.1

Sequence Viewer

Length: 981 bp
ATGACTATCCTCGTTGAGAAGCCTAAGGTAGTGGCCACAGTGGAGGACCAGAATGAAACCAGTGATTTGGTGTTGGATGGTGGGTTTGTGGTTTTGAAAGACGTAGCCGGCAACGATGGATGTGTGAAGCCAGAAGCTCTAGTGTCGAACGATGAGTTCATTGCTCCTGAAATCAATGCATTTGGCCAGACATTCAGGGATTACAATGCAGAGAGTGAGAGGCAGAAAGGTGTGGAGGAATTCTACCGGTTGAACCACATTCACCAAACATATGATTTCGTGAAGAAAATGAGAGAGGAGTACAGAAAGCTCAATCGAGTTGAAATGAGCATATGGGAATGCTGTGAACTCCTCAATGAAGTTGTGGACGACAGTGATCCCGATTTGGACGAACCCCAAATTGAGCACTTGTTGCAAACAGCTGAAGCAATTCGAAAAGACTACCCTGATGAAGACTGGCTTCACTTGACTGCTCTTATTCATGATCTCGGAAAGGTGCTGCTGCTTCCGAGCTTTGGAGGCCTTCCTCAATGGGCTGTTGTTGGAGACACACATCCAGTTGGGTGCCCCTTTGATGGCTCCATTGTCCACCACAAGTACTTCAAGGACAACCCGGACTACAACAATCCGAAGTACAACAGCAGTAAGTATGGTATTTACGCACATGGGATTGGCCTGGAGAATGTGTTGATGTCTTGGGGTCATGACGACTACATGTACTTGGTGGCCAAAGAAAATGGCTCAACTTTGCCTCAGGCCGGATTGTTCATTATCCGGTATCACTCCTTTTATCCTTTGCACAAATGCGAGGCATATAAGCACCTCATGAACAAGGAGGATGAAGAGAATTTGAAGTGGCTTAAAATCTTCAACAAGTATGACCTCTACAGCAAGAGCAAAGTTAGAATTGATGTCGAAAAAGTCCAGCCATATTACTTCTCCCTTATTGAGAAGTACTTCCCAGCAAAGCTGAAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

37.88

Weight (kDa)

5.14

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 76 - 326 1.3e-122 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 564
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 3 cut(s) 33, 184, 726
AcsI RAATTY 2 cut(s) 239, 847
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 5 cut(s) 302, 599, 635, 719, 956
AfiI CCNNNNNNNGG 3 cut(s) 515, 575, 758
AflIII ACRYGT 1 cut(s) 714
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 6 cut(s) 97, 253, 323, 604, 853, 871
AjnI CCWGG 1 cut(s) 675
AluBI AGCT 5 cut(s) 137, 310, 422, 513, 970
AluI AGCT 5 cut(s) 137, 310, 422, 513, 970
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 1 cut(s) 371
AoxI GGCC 6 cut(s) 33, 184, 520, 673, 726, 756
ApeKI GCWGC 2 cut(s) 499, 502
ApoI RAATTY 2 cut(s) 239, 847
AsiGI ACCGGT 1 cut(s) 246
Asp700I GAANNNNTTC 2 cut(s) 429, 956
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 46
AxyI CCTNAGG 2 cut(s) 24, 753
BaeGI GKGCMC 1 cut(s) 569
BalI TGGCCA 3 cut(s) 35, 186, 728
BanI GGYRCC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 486, 489
BccI CCATC 3 cut(s) 71, 110, 569
BciT130I CCWGG 1 cut(s) 677
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 886
BisI GCNGC 2 cut(s) 500, 503
BlsI GCNGC 2 cut(s) 501, 504
BmcAI AGTACT 2 cut(s) 599, 956
Bme1390I CCNGG 2 cut(s) 614, 677
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 566, 580
BmrFI CCNGG 2 cut(s) 614, 677
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 698
Bpu14I TTCGAA 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 614
BsaWI WCCGGW 2 cut(s) 246, 774
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 575, 758
Bse118I RCCGGY 2 cut(s) 107, 246
Bse1I ACTGG 3 cut(s) 60, 461, 557
Bse21I CCTNAGG 2 cut(s) 24, 753
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 677
BseGI GGATG 4 cut(s) 82, 125, 553, 844
BseLI CCNNNNNNNGG 3 cut(s) 515, 575, 758
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 767
BseNI ACTGG 3 cut(s) 60, 461, 557
BseRI GAGGAG 2 cut(s) 311, 341
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 2 cut(s) 486, 489
BseYI CCCAGC 1 cut(s) 961
BshFI GGCC 6 cut(s) 35, 186, 522, 675, 728, 758
BshNI GGYRCC 1 cut(s) 564
BshTI ACCGGT 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 5 cut(s) 108, 247, 614, 759, 775
BslI CCNNNNNNNGG 3 cut(s) 515, 575, 758
BsmAI GTCTC 1 cut(s) 540
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 6 cut(s) 35, 186, 522, 675, 728, 758
Bsp119I TTCGAA 1 cut(s) 433
Bsp1286I GDGCHC 2 cut(s) 408, 569
Bsp143I GATC 2 cut(s) 376, 484
BspANI GGCC 6 cut(s) 35, 186, 522, 675, 728, 758
BspCNI CTCAG 1 cut(s) 766
BspHI TCATGA 3 cut(s) 481, 703, 825
BspLI GGNNCC 2 cut(s) 566, 580
BspPI GGATC 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 564
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 2 cut(s) 107, 246
BsrI ACTGG 3 cut(s) 60, 461, 557
BssAI RCCGGY 2 cut(s) 107, 246
BssMI GATC 2 cut(s) 376, 484
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 2 cut(s) 40, 374
Bst6I CTCTTC 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 412
BstBI TTCGAA 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 24, 753
BstF5I GGATG 4 cut(s) 82, 125, 553, 844
BstKTI GATC 2 cut(s) 379, 487
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 2 cut(s) 376, 484
BstMWI GCNNNNNNNGC 2 cut(s) 412, 519
BstNI CCWGG 1 cut(s) 677
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 2 cut(s) 612, 675
BstSFI CTRYAG 1 cut(s) 886
BstSLI GKGCMC 1 cut(s) 569
BstV1I GCAGC 2 cut(s) 486, 489
BstV2I GAAGAC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 67
Bsu36I CCTNAGG 2 cut(s) 24, 753
BsuRI GGCC 6 cut(s) 35, 186, 522, 675, 728, 758
BtsCI GGATG 4 cut(s) 82, 125, 553, 844
BtsIMutI CAGTG 3 cut(s) 45, 67, 379
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 3 cut(s) 481, 703, 825
Cfr10I RCCGGY 2 cut(s) 107, 246
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 5 cut(s) 301, 598, 634, 718, 955
CspAI ACCGGT 1 cut(s) 246
CviAII CATG 5 cut(s) 482, 665, 704, 715, 826
CviQI GTAC 5 cut(s) 301, 598, 634, 718, 955
DdeI CTNAG 2 cut(s) 24, 753
DpnI GATC 2 cut(s) 378, 486
DpnII GATC 2 cut(s) 376, 484
EaeI YGGCCR 3 cut(s) 33, 184, 726
Eam1104I CTCTTC 1 cut(s) 837
EarI CTCTTC 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 444
Eco81I CCTNAGG 2 cut(s) 24, 753
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 5 cut(s) 485, 668, 707, 718, 829
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 5 cut(s) 481, 664, 703, 714, 825
FauNDI CATATG 2 cut(s) 271, 332
Fnu4HI GCNGC 2 cut(s) 500, 503
FokI GGATG 4 cut(s) 89, 132, 540, 851
Fsp4HI GCNGC 2 cut(s) 500, 503
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 500, 503
GsaI CCCAGC 1 cut(s) 965
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 6 cut(s) 35, 186, 522, 675, 728, 758
HapII CCGG 5 cut(s) 108, 247, 614, 759, 775
Hin1II CATG 5 cut(s) 485, 668, 707, 718, 829
HpaII CCGG 5 cut(s) 108, 247, 614, 759, 775
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 347, 367, 589
Hpy188I TCNGA 3 cut(s) 491, 510, 630
Hpy188III TCNNGA 6 cut(s) 167, 280, 380, 482, 704, 826
Hpy8I GTNNAC 3 cut(s) 347, 367, 589
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 2 cut(s) 40, 374
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 179, 209, 415, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 519
HpyF3I CTNAG 2 cut(s) 24, 753
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 5 cut(s) 485, 668, 707, 718, 829
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 376, 484
LmnI GCTCC 2 cut(s) 169, 584
Lsp1109I GCAGC 2 cut(s) 486, 489
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 102
MalI GATC 2 cut(s) 378, 486
MboI GATC 2 cut(s) 376, 484
MboII GAAGA 4 cut(s) 295, 464, 854, 859
MhlI GDGCHC 2 cut(s) 408, 569
MlsI TGGCCA 3 cut(s) 35, 186, 728
MluCI AATT 5 cut(s) 239, 399, 429, 847, 906
MluNI TGGCCA 3 cut(s) 35, 186, 728
MmeI TCCRAC 2 cut(s) 54, 523
Mox20I TGGCCA 3 cut(s) 35, 186, 728
Mph1103I ATGCAT 1 cut(s) 181
MroNI GCCGGC 1 cut(s) 107
MroXI GAANNNNTTC 2 cut(s) 429, 956
MscI TGGCCA 3 cut(s) 35, 186, 728
MseI TTAA 1 cut(s) 861
Msp20I TGGCCA 3 cut(s) 35, 186, 728
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 5 cut(s) 108, 247, 614, 759, 775
MspR9I CCNGG 2 cut(s) 614, 677
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 1 cut(s) 677
MwoI GCNNNNNNNGC 2 cut(s) 412, 519
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 1 cut(s) 614
NdeI CATATG 2 cut(s) 271, 332
NdeII GATC 2 cut(s) 376, 484
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 5 cut(s) 485, 668, 707, 718, 829
NlaIV GGNNCC 2 cut(s) 566, 580
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 718
NspV TTCGAA 1 cut(s) 433
PagI TCATGA 3 cut(s) 481, 703, 825
PceI AGGCCT 1 cut(s) 522
PciI ACATGT 1 cut(s) 714
PctI GAATGC 1 cut(s) 344
PdiI GCCGGC 1 cut(s) 109
PdmI GAANNNNTTC 2 cut(s) 429, 956
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 2 cut(s) 501, 504
PscI ACATGT 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 961
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 2 cut(s) 566, 580
PspPI GGNCC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 5 cut(s) 302, 599, 635, 719, 956
RsaNI GTAC 5 cut(s) 301, 598, 634, 718, 955
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 2 cut(s) 500, 503
Sau3AI GATC 2 cut(s) 376, 484
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 2 cut(s) 599, 956
ScrFI CCNGG 2 cut(s) 614, 677
SduI GDGCHC 2 cut(s) 408, 569
SfcI CTRYAG 1 cut(s) 886
SfuI TTCGAA 1 cut(s) 433
SinI GGWCC 1 cut(s) 46
Sse9I AATT 5 cut(s) 239, 399, 429, 847, 906
SseBI AGGCCT 1 cut(s) 522
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 522
StyD4I CCNGG 2 cut(s) 612, 675
TaaI ACNGT 2 cut(s) 40, 374
TaiI ACGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 146, 316, 433, 915
TasI AATT 5 cut(s) 239, 399, 429, 847, 906
TatI WGTACW 5 cut(s) 300, 597, 633, 717, 954
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 3 cut(s) 45, 67, 379
TseI GCWGC 2 cut(s) 499, 502
TspDTI ATGAA 8 cut(s) 69, 148, 372, 465, 470, 757, 842, 855
TspRI CASTG 3 cut(s) 45, 67, 379
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 2 cut(s) 239, 847
XceI RCATGY 1 cut(s) 718
XmnI GAANNNNTTC 2 cut(s) 429, 956
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 2 cut(s) 599, 956
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.