Rh7DG315000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002100
Physical Location & Seq
Forward (+)
37019335 .. 37022092
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG315000.1

Sequence Viewer

Length: 528 bp
ATGCAGATGCAAGAGGTTGCAGGAGAACGTGGAGGTTACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTATTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAACGCCTCCTTCGTCGCACTGAGAAACGAGCATTTGCTGCATTTAAGATATCCTTTTATGAAATTGCTTCTACTGCAAGTCTGGCAGATTCTTCACCTGCATCGGCTCCCTTGACACTTCGTGTTGAGCCCAAACAAAAGAGTGGGATTAGACAGCAAGATCTACTGAAAAAGGTGGTAGAAGTTAAACCCAAAAAGCAGAAAGTTGCAAGTCCATCTAATGGTAATCAGTTGTCCCTCTCCCAAAAGAATGTTGGTGCTTCTTCGACAAATCTTAAGCCTGAATCTGACCAGGACAAGGACAAGGTGCATTTGTCATCACCATCTTCCAAAATAGATGGTGAGTCCAAGGTGGAAACTACTGCCCAAAGCTTATTAGGCTTAGCATATGCAAGCTCTGACGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.07

Weight (kDa)

5.55

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 335, 412
AflII CTTAAG 1 cut(s) 389
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 3 cut(s) 101, 486, 510
AluI AGCT 3 cut(s) 101, 486, 510
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 201, 426, 467
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 139
BccI CCATC 4 cut(s) 88, 337, 445, 446
BciT130I CCWGG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 220
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 55, 222
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 100, 224
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 49, 57, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 412
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 49, 57, 462
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 335, 412
BseMII CTCAG 2 cut(s) 93, 126
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 2 cut(s) 335, 412
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 496
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 94, 127
BspLI GGNNCC 2 cut(s) 55, 222
BspMI ACCTGC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 53
BspTI CTTAAG 1 cut(s) 389
BssECI CCNNGG 3 cut(s) 49, 57, 462
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 2 cut(s) 57, 462
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 3 cut(s) 102, 135, 496
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 4 cut(s) 152, 188, 197, 492
BstNI CCWGG 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 70, 132
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 508
CfoI GCGC 1 cut(s) 56
CviAII CATG 1 cut(s) 44
CviJI RGCY 8 cut(s) 48, 101, 221, 244, 394, 486, 495, 510
CviKI_1 RGCY 8 cut(s) 48, 101, 221, 244, 394, 486, 495, 510
DdeI CTNAG 3 cut(s) 102, 135, 496
DinI GGCGCC 1 cut(s) 55
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraIII CACNNNGTG 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 57, 462
Eco24I GRGCYC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 57, 462
EcoT38I GRGCYC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 57, 462
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 45, 79, 174, 502, 504
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 334
FatI CATG 1 cut(s) 43
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 1 cut(s) 48
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 3 cut(s) 203, 398, 458
HphI GGTGA 3 cut(s) 201, 426, 467
Hpy188I TCNGA 2 cut(s) 403, 514
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 50, 134
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 188, 197, 492
HpyF3I CTNAG 3 cut(s) 102, 135, 496
HpySE526I ACGT 1 cut(s) 28
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 88, 226
LpnPI CCDG 6 cut(s) 6, 182, 225, 392, 408, 419
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 100, 224
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 198, 369, 432
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 1 cut(s) 177
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 7 cut(s) 7, 26, 44, 97, 100, 131, 362
MseI TTAA 4 cut(s) 159, 300, 390, 526
MspCI CTTAAG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 4 cut(s) 152, 188, 197, 492
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 1 cut(s) 502
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 55, 222
NmeAIII GCCGAG 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 2 cut(s) 203, 398
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 466
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 405
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 55, 222
PsuI RGATCY 1 cut(s) 274
SaqAI TTAA 4 cut(s) 159, 300, 390, 526
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 2 cut(s) 100, 224
SfoI GGCGCC 1 cut(s) 55
SmlI CTYRAG 2 cut(s) 83, 389
SmoI CTYRAG 2 cut(s) 83, 389
Sse9I AATT 1 cut(s) 177
SspDI GGCGCC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 2 cut(s) 57, 462
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 380
TasI AATT 1 cut(s) 177
TfiI GAWTC 2 cut(s) 203, 398
Tru1I TTAA 4 cut(s) 159, 300, 390, 526
Tru9I TTAA 4 cut(s) 159, 300, 390, 526
TscAI CASTG 2 cut(s) 70, 139
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 32, 189
TspRI CASTG 2 cut(s) 70, 139
Van91I CCANNNNNTGG 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.