Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Reverse (-)

33596033 .. 33598563

Gene Structure 2531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCAGGCAGAGAAGTTCGAGAATACACCAATCTCACCGACCCTAAAGATAAAAAATGGGGGAAAGGGAAGGATAAGGTAGACGATGAAGACGTCACCTTCCAACGCATGGTTGCCAAGATGCAAGAGGTTGCAGGAGAACGTGGAGGTTACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTATTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAACGCCTCCTTCGTCGCACTGAGAAACGAGCATTTGCTGCATTTAAGATATCCTTTTATGAAATTGCGTCTAGTTCTCTTTCTTCTCCCTCTTCTATCTTAGTTTACTTAACCAATGCACACCAAGCTGCAAGTCTAGCAGATTCTTCACCTGCATCGGCTCCCTTGACACTTCGTGTTGAGCCCAAACAAAAGAGTGGGATTAGACAGCAAGATCTACTGAAAAAGGTGGTAGAAGTTAAACCCAAAAAGCAGAAAGTTGCAAGTCCATCTAATGGTAATCAGTTGCCCCTATCCCAAAAGAATGTTGGTGCTTCTTCGACAAATCTTAAGCCTGAATCTGACCAGGACAGGGACAAGGTGCATTTGTCATCACCATCTTCCAAAATAGATGGTGAGTCCAAGGTGGAAACTACTGCCCAAAGCTTATTGGGCTTAGCATATGCAAGCTCTGACGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.37

Weight (kDa)

6.03

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	109, 503
AccI	GTMKAC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	93, 168
AdeI	CACNNNGTG	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	109, 503, 580
AflII	CTTAAG	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	4 cut(s)	215, 356, 654, 678
AluI	AGCT	4 cut(s)	215, 356, 654, 678
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	266, 356
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	5 cut(s)	28, 88, 369, 594, 635
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	253, 343
BccI	CCATC	4 cut(s)	202, 505, 613, 614
BciT130I	CCWGG	1 cut(s)	575
BfaI	CTAG	2 cut(s)	300, 365
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	388
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	2 cut(s)	267, 357
BlpI	GCTNAGC	1 cut(s)	664
BlsI	GCNGC	2 cut(s)	268, 358
Bme1390I	CCNGG	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	169, 390
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	3 cut(s)	111, 214, 392
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	93, 168
BsaJI	CCNNGG	3 cut(s)	163, 171, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 503, 580
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	163, 171, 630
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	109, 503, 580
BseMII	CTCAG	2 cut(s)	207, 240
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	253, 343
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	3 cut(s)	109, 503, 580
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	442
Bsp1720I	GCTNAGC	1 cut(s)	664
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	208, 241
BspLI	GGNNCC	2 cut(s)	169, 390
BspMI	ACCTGC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	557
BssECI	CCNNGG	3 cut(s)	163, 171, 630
BssMI	GATC	1 cut(s)	442
BssNI	GRCGYC	2 cut(s)	93, 168
BssT1I	CCWWGG	2 cut(s)	171, 630
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	325
BstACI	GRCGYC	2 cut(s)	93, 168
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	7, 676
BstDEI	CTNAG	4 cut(s)	216, 249, 328, 664
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 353, 365, 660
BstNI	CCWGG	1 cut(s)	575
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	253, 343
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	184, 246
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	7, 676
CfoI	GCGC	1 cut(s)	170
CseI	GACGC	1 cut(s)	285
CviAII	CATG	2 cut(s)	109, 158
CviJI	RGCY	9 cut(s)	162, 215, 356, 389, 412, 562, 654, 663, 678
CviKI_1	RGCY	9 cut(s)	162, 215, 356, 389, 412, 562, 654, 663, 678
DdeI	CTNAG	4 cut(s)	216, 249, 328, 664
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraIII	CACNNNGTG	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	171, 630
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	171, 630
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	171, 630
FaeI	CATG	2 cut(s)	112, 161
FaiI	YATR	6 cut(s)	110, 159, 193, 288, 670, 672
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	2 cut(s)	108, 157
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	267, 357
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	267, 357
FspBI	CTAG	2 cut(s)	300, 365
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	267, 357
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	162
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	93, 168
Hin1II	CATG	2 cut(s)	112, 161
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	3 cut(s)	371, 566, 626
HphI	GGTGA	5 cut(s)	28, 88, 369, 594, 635
Hpy166II	GTNNAC	2 cut(s)	82, 334
Hpy188I	TCNGA	2 cut(s)	571, 682
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	82, 334
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	64, 109, 164, 248
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	93, 142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 353, 365, 660
HpyF3I	CTNAG	4 cut(s)	216, 249, 328, 664
HpySE526I	ACGT	2 cut(s)	93, 142
Hsp92I	GRCGYC	2 cut(s)	93, 168
Hsp92II	CATG	2 cut(s)	112, 161
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	202, 394
LpnPI	CCDG	6 cut(s)	120, 393, 560, 565, 576, 587
Lsp1109I	GCAGC	2 cut(s)	253, 343
LweI	GCATC	3 cut(s)	111, 214, 392
MaeI	CTAG	2 cut(s)	300, 365
MaeII	ACGT	2 cut(s)	93, 142
MaeIII	GTNAC	2 cut(s)	94, 149
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	6 cut(s)	101, 303, 312, 366, 537, 600
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	121, 140, 158, 211, 214, 245, 328
MseI	TTAA	5 cut(s)	273, 338, 468, 558, 694
MspCI	CTTAAG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	4 cut(s)	266, 353, 365, 660
NarI	GGCGCC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	112, 161
NlaIV	GGNNCC	2 cut(s)	169, 390
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 238
PfeI	GAWTC	2 cut(s)	371, 566
PflMI	CCANNNNNTGG	2 cut(s)	109, 503
PkrI	GCNGC	2 cut(s)	268, 358
PleI	GAGTC	1 cut(s)	634
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	573
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	169, 390
PsuI	RGATCY	1 cut(s)	442
SaqAI	TTAA	5 cut(s)	273, 338, 468, 558, 694
SatI	GCNGC	2 cut(s)	267, 357
Sau3AI	GATC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	3 cut(s)	111, 214, 392
SfoI	GGCGCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	197, 557
SmoI	CTYRAG	2 cut(s)	197, 557
Sse9I	AATT	1 cut(s)	291
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	300, 365
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	2 cut(s)	171, 630
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	96, 145
TaqI	TCGA	2 cut(s)	19, 548
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	371, 566
Tru1I	TTAA	5 cut(s)	273, 338, 468, 558, 694
Tru9I	TTAA	5 cut(s)	273, 338, 468, 558, 694
TscAI	CASTG	2 cut(s)	184, 253
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	266, 356
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	102, 146, 303
TspRI	CASTG	2 cut(s)	184, 253
Van91I	CCANNNNNTGG	2 cut(s)	109, 503
Vha464I	CTTAAG	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	300, 365
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.