Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Reverse (-)

47810659 .. 47816216

Gene Structure 5558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G588300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAATTTTCTTCCTTGTTTTATTTATGATGCAGTCTATTGCTTTACTCTTCTGAATCAAGAGAAACTTTCCGCTTTAAGAAATTGTCATAATCATATATCGTTTATTTTTAAAGTGAGCGCAATGGCAGGCAGAGAAGTTCGAGAGTACACCAATCTCTCCGACCCAAAAGATAAGAAATGGGGGAAAGGGAAAGATAAGATAGACGATGAAGACGTCACATTCCAACGCATGGTTGCCAAGATGCAAGAGGTTGCAGGAGAACGTGGAGGATACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTACTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAGCGCCTCCTTCGTCGCACTGAGAAGCGAGCATTTGCTGCATTTAAGAAAGCTGCAAGTCTGGCAGATTCTTCACCTGCATCGGTTCCCTTGCCACTTCGTGTTGAGCCCAAGCAAAAGAGTGGGATCAGACAGCAAGATCTACTGAAAAAGGTCATCGAAATTAAACCCAAGCGGCATAAAGTTTCAAGCAGATCTGATGGTAATCAGTCCCACCCAAATTTGATTGTTAGTGCTTCGACAAATCTTGAGTCTGAAAATGACCAAGTGAGGGACAAAGTGCATGTGTCGTCGTCACACAGAATAAAGGGCGAGTCTGAAGGGAAAACTACAGCCAAAAGTTTGTTAGGATTAGCATATGCAAGTTCTGACAATGAAGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.56

Weight (kDa)

8.3

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
AatII	GACGTC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	2 cut(s)	72, 526
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	4, 571
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	2 cut(s)	216, 291
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	232, 622
AgsI	TTSAA	1 cut(s)	540
AluBI	AGCT	2 cut(s)	338, 404
AluI	AGCT	2 cut(s)	338, 404
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	389, 404
ApoI	RAATTY	2 cut(s)	4, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AspLEI	GCGC	3 cut(s)	122, 293, 357
AsuHPI	GGTGA	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	376, 391
BccI	CCATC	2 cut(s)	325, 545
BciVI	GTATCC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	2 cut(s)	294, 358
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	266
BglII	AGATCT	2 cut(s)	490, 545
BisI	GCNGC	3 cut(s)	390, 405, 527
BlsI	GCNGC	3 cut(s)	391, 406, 528
BmiI	GGNNCC	2 cut(s)	292, 438
BmsI	GCATC	4 cut(s)	19, 234, 337, 440
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	305, 620
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	2 cut(s)	216, 291
BsaJI	CCNNGG	2 cut(s)	286, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 622
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	286, 294
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	232, 622
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	330, 363
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	376, 391
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	290
BslFI	GGGAC	2 cut(s)	547, 638
BslI	CCNNNNNNNGG	2 cut(s)	232, 622
BsmFI	GGGAC	2 cut(s)	547, 638
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	477, 490, 545
BspACI	CCGC	2 cut(s)	72, 526
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	331, 364
BspLI	GGNNCC	2 cut(s)	292, 438
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	286, 294
BssMI	GATC	3 cut(s)	477, 490, 545
BssNI	GRCGYC	2 cut(s)	216, 291
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	2 cut(s)	54, 723
BstACI	GRCGYC	2 cut(s)	216, 291
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	130, 381
BstDEI	CTNAG	2 cut(s)	339, 372
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	2 cut(s)	294, 358
BstHHI	GCGC	3 cut(s)	122, 293, 357
BstKTI	GATC	3 cut(s)	480, 493, 548
BstMBI	GATC	3 cut(s)	477, 490, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 413
BstNSI	RCATGY	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	2 cut(s)	376, 391
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	490, 545
BstYI	RGATCY	2 cut(s)	490, 545
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	307, 369
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	130, 381
CfoI	GCGC	3 cut(s)	122, 293, 357
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	232, 281, 635
CviJI	RGCY	5 cut(s)	285, 338, 404, 460, 686
CviKI_1	RGCY	5 cut(s)	285, 338, 404, 460, 686
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	339, 372
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	3 cut(s)	479, 492, 547
DpnII	GATC	3 cut(s)	477, 490, 545
DraI	TTTAAA	1 cut(s)	112
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	54, 723
EarI	CTCTTC	2 cut(s)	54, 723
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	235, 284, 638
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	547, 638
FatI	CATG	3 cut(s)	231, 280, 634
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	390, 405, 527
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	390, 405, 527
GlaI	GCGC	3 cut(s)	121, 292, 356
GluI	GCNGC	3 cut(s)	390, 405, 527
HaeII	RGCGCY	2 cut(s)	294, 358
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	3 cut(s)	122, 293, 357
Hin1I	GRCGYC	2 cut(s)	216, 291
Hin1II	CATG	3 cut(s)	235, 284, 638
Hin6I	GCGC	3 cut(s)	120, 291, 355
HinP1I	GCGC	3 cut(s)	120, 291, 355
HinfI	GANTC	4 cut(s)	55, 419, 602, 665
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	7 cut(s)	54, 163, 482, 550, 607, 670, 721
Hpy188III	TCNNGA	3 cut(s)	59, 143, 599
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	2 cut(s)	369, 646
HpyAV	CCTTC	3 cut(s)	287, 371, 665
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	216, 265
HpyCH4V	TGCA	9 cut(s)	32, 247, 257, 350, 392, 407, 431, 634, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 413
HpyF3I	CTNAG	2 cut(s)	339, 372
HpySE526I	ACGT	2 cut(s)	216, 265
Hsp92I	GRCGYC	2 cut(s)	216, 291
Hsp92II	CATG	3 cut(s)	235, 284, 638
HspAI	GCGC	3 cut(s)	120, 291, 355
KasI	GGCGCC	1 cut(s)	290
Kzo9I	GATC	3 cut(s)	477, 490, 545
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	4 cut(s)	114, 243, 398, 441
Lsp1109I	GCAGC	2 cut(s)	376, 391
LweI	GCATC	4 cut(s)	19, 234, 337, 440
MaeII	ACGT	2 cut(s)	216, 265
MaeIII	GTNAC	2 cut(s)	217, 645
MalI	GATC	3 cut(s)	479, 492, 547
MboI	GATC	3 cut(s)	477, 490, 545
MboII	GAAGA	3 cut(s)	41, 224, 414
MflI	RGATCY	2 cut(s)	490, 545
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	4, 82, 513, 571
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	611, 674
MmeI	TCCRAC	2 cut(s)	186, 250
MnlI	CCTC	8 cut(s)	244, 263, 281, 334, 337, 368, 615, 724
MseI	TTAA	5 cut(s)	77, 111, 396, 516, 736
MwoI	GCNNNNNNNGC	2 cut(s)	389, 413
NarI	GGCGCC	1 cut(s)	291
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	477, 490, 545
NlaIII	CATG	3 cut(s)	235, 284, 638
NlaIV	GGNNCC	2 cut(s)	292, 438
NmeAIII	GCCGAG	1 cut(s)	311
NmuCI	GTSAC	2 cut(s)	217, 645
NspI	RCATGY	1 cut(s)	638
PaqCI	CACCTGC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	55, 419
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	391, 406, 528
PleI	GAGTC	2 cut(s)	610, 673
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	610, 673
PspN4I	GGNNCC	2 cut(s)	292, 438
PsuI	RGATCY	2 cut(s)	490, 545
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	5 cut(s)	77, 111, 396, 516, 736
SatI	GCNGC	3 cut(s)	390, 405, 527
Sau3AI	GATC	3 cut(s)	477, 490, 545
SchI	GAGTC	2 cut(s)	611, 674
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	9 cut(s)	219, 255, 268, 279, 312, 340, 406, 430, 507
SfaNI	GCATC	4 cut(s)	19, 234, 337, 440
SfcI	CTRYAG	1 cut(s)	681
SfoI	GGCGCC	1 cut(s)	292
SmlI	CTYRAG	2 cut(s)	320, 599
SmoI	CTYRAG	2 cut(s)	320, 599
Sse9I	AATT	4 cut(s)	4, 82, 513, 571
SsiI	CCGC	2 cut(s)	72, 526
SspDI	GGCGCC	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	219, 268
TaqI	TCGA	3 cut(s)	142, 510, 590
TasI	AATT	4 cut(s)	4, 82, 513, 571
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	2 cut(s)	55, 419
Tru1I	TTAA	5 cut(s)	77, 111, 396, 516, 736
Tru9I	TTAA	5 cut(s)	77, 111, 396, 516, 736
TscAI	CASTG	2 cut(s)	307, 376
TseFI	GTSAC	2 cut(s)	217, 645
TseI	GCWGC	2 cut(s)	389, 404
Tsp45I	GTSAC	2 cut(s)	217, 645
TspDTI	ATGAA	3 cut(s)	17, 225, 269
TspRI	CASTG	2 cut(s)	307, 376
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	4, 571
XceI	RCATGY	1 cut(s)	638
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.