Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000379.1

Orthogroup ID

OG0002100

Physical Location & Seq

Genomic Coordinates Forward (+)

79043 .. 81551

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000379.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggcaggcagagaagttcgagaatacaccaatctcacagaccctaaagataaaaaatgggggaaagggaaggataaggtggacgatgaagacgtcaccttccaacgcatggttgcaaagatgcaagaggttgcaggagaacgtggaggttaccttcatggccgaggcgccttggacagtgatgacctattatatctcaaggagcagatggaagctgaggaggatgcagaacgcctccttcgtcgcactgagaaacgagcatttgctgcatttaagatatccttttatgaaattgcttctagtgtcttgatgtgcactaagttgctggtaacaagcactgttgctgtactttgctattcttcacctgcatcggctcccttgacacttcgtgttgagcccaaacaaaagagtgggattagacagcaagatctactgaaaaaggtggtagaagttaaacccaaaaagcagaaagttgctagtccatctaatggtaatcagttgtccctctcccaaaagaatgttggtgcttcttcgacaaatcttaagcctgaatctgaccaggacaaggacaaggtgcatttgtcatcaccatcttccaaaatagatggtgagtccaaggtggaaactactgcccaaagcttattaggcttagcatatgcaagctctgacgatgaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.95

Weight (kDa)

6.77

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350 AT1G73350
fragaria_vesca	FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080 FvH4_5g27080
malus_domestica	MD06G1000100.v1.1
prunus_persica	Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1 Prupe.1G588300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218081
rosa_laevigata	RLG00000002407
rosa_multiflora	Rmu_sc0000379.1_g000018
rosa_roxburghii	Rroxscaffold_3G00241340
rosa_rugosa	Rorug07G0173600 Rorug07G0173600 Rorug07G0173700 Rorug07G0173800
rosa_samantha	Rh7AG316200 Rh7BG306400 Rh7CG333300 Rh7DG315000
rosa_wichuraiana	Rw7G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	109, 488
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	93, 168
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	109, 488, 565
AflII	CTTAAG	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	3 cut(s)	215, 639, 663
AluI	AGCT	3 cut(s)	215, 639, 663
Alw21I	GWGCWC	1 cut(s)	317
Alw44I	GTGCAC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	160
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	4 cut(s)	88, 354, 579, 620
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	202, 490, 598, 599
BciT130I	CCWGG	1 cut(s)	560
BfaI	CTAG	2 cut(s)	300, 477
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	560
BmiI	GGNNCC	2 cut(s)	169, 375
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	3 cut(s)	111, 214, 377
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	93, 168
BsaJI	CCNNGG	3 cut(s)	163, 171, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 488, 565
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	3 cut(s)	163, 171, 615
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	109, 488, 565
BseMII	CTCAG	2 cut(s)	207, 240
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	109, 488, 565
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	317, 399
Bsp143I	GATC	1 cut(s)	427
Bsp1720I	GCTNAGC	1 cut(s)	649
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	208, 241
BspLI	GGNNCC	2 cut(s)	169, 375
BspMI	ACCTGC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	163, 171, 615
BssMI	GATC	1 cut(s)	427
BssNI	GRCGYC	2 cut(s)	93, 168
BssT1I	CCWWGG	2 cut(s)	171, 615
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	179, 340
BstACI	GRCGYC	2 cut(s)	93, 168
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	7, 661
BstDEI	CTNAG	4 cut(s)	216, 249, 318, 649
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 645
BstNI	CCWGG	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	3 cut(s)	184, 246, 336
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	7, 661
CfoI	GCGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	2 cut(s)	109, 158
CviJI	RGCY	8 cut(s)	162, 215, 374, 397, 547, 639, 648, 663
CviKI_1	RGCY	8 cut(s)	162, 215, 374, 397, 547, 639, 648, 663
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	4 cut(s)	216, 249, 318, 649
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	171, 615
Eco24I	GRGCYC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	558
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	171, 615
EcoT38I	GRGCYC	1 cut(s)	399
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	171, 615
FaeI	CATG	2 cut(s)	112, 161
FaiI	YATR	6 cut(s)	110, 159, 193, 288, 655, 657
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	108, 157
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	300, 477
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	93, 168
Hin1II	CATG	2 cut(s)	112, 161
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	2 cut(s)	551, 611
HphI	GGTGA	4 cut(s)	88, 354, 579, 620
Hpy166II	GTNNAC	2 cut(s)	82, 315
Hpy188I	TCNGA	2 cut(s)	556, 667
Hpy188III	TCNNGA	2 cut(s)	20, 307
Hpy8I	GTNNAC	2 cut(s)	82, 315
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	64, 109, 164, 248
HpyCH4III	ACNGT	2 cut(s)	179, 340
HpyCH4IV	ACGT	2 cut(s)	93, 142
HpyCH4V	TGCA	9 cut(s)	116, 124, 134, 227, 269, 315, 368, 577, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 645
HpyF3I	CTNAG	4 cut(s)	216, 249, 318, 649
HpySE526I	ACGT	2 cut(s)	93, 142
Hsp92I	GRCGYC	2 cut(s)	93, 168
Hsp92II	CATG	2 cut(s)	112, 161
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	202, 379
LpnPI	CCDG	6 cut(s)	120, 311, 378, 545, 561, 572
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	111, 214, 377
MaeI	CTAG	2 cut(s)	300, 477
MaeII	ACGT	2 cut(s)	93, 142
MaeIII	GTNAC	3 cut(s)	94, 149, 328
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	4 cut(s)	101, 351, 522, 585
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	317, 399
MluCI	AATT	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	121, 140, 158, 211, 214, 245, 515
MseI	TTAA	4 cut(s)	273, 453, 543, 679
MspCI	CTTAAG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	266, 645
NarI	GGCGCC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	112, 161
NlaIV	GGNNCC	2 cut(s)	169, 375
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 238
PfeI	GAWTC	1 cut(s)	551
PflMI	CCANNNNNTGG	2 cut(s)	109, 488
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	619
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	558
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	169, 375
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	273, 453, 543, 679
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	2 cut(s)	317, 399
SfaNI	GCATC	3 cut(s)	111, 214, 377
SfoI	GGCGCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	197, 542
SmoI	CTYRAG	2 cut(s)	197, 542
Sse9I	AATT	1 cut(s)	291
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	300, 477
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	2 cut(s)	171, 615
TaaI	ACNGT	2 cut(s)	179, 340
TaiI	ACGT	2 cut(s)	96, 145
TaqI	TCGA	2 cut(s)	19, 533
TasI	AATT	1 cut(s)	291
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	273, 453, 543, 679
Tru9I	TTAA	4 cut(s)	273, 453, 543, 679
TscAI	CASTG	3 cut(s)	184, 253, 343
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	102, 146, 303
TspRI	CASTG	3 cut(s)	184, 253, 343
Van91I	CCANNNNNTGG	2 cut(s)	109, 488
Vha464I	CTTAAG	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XspI	CTAG	2 cut(s)	300, 477
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.