RchiOBHm_Chr7g0218081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002100
Physical Location & Seq
Forward (+)
36041329 .. 36044224
2896 bp
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UTR
Exon/CDS
Intron
PRQ19521

Sequence Viewer

Length: 366 bp
ATGGCAGGCAGAGAAGTTCGAGAATACACCAATCTCACAGACCCTAAAGATAAAAAATGGGGGAAAGGGAAGGATAAGGTGGACGATGAAGACGTCACCTTCCAACGCATGGTTGCAAAGATGCAAGAGGTTGCAGGAGAACGTGGAGGTTACCTTCATGGCCGAGGCGCCTTGGACAGTGATGACCTATTATATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCAGAACGCCTCCTTCGTCGCACTGAGAAACGAGCATTTGCTGCATTTAAGATATCCTTTTATGAAATTGCTTCTAGTGTCTTGATGTGCACCAAGTTGCTGGTAACGAGCACTGTTGCTGTACTTTGCTGTCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

5.52

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 160
AcyI GRCGYC 2 cut(s) 93, 168
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 2 cut(s) 317, 338
Alw44I GTGCAC 1 cut(s) 313
AoxI GGCC 1 cut(s) 160
ApaLI GTGCAC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 317, 338
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 202
BfaI CTAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 169
BmsI GCATC 2 cut(s) 111, 214
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 182
BsaHI GRCGYC 2 cut(s) 93, 168
BsaJI CCNNGG 2 cut(s) 163, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 163, 171
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 207, 240
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 317, 338
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 317, 338
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 208, 241
BspLI GGNNCC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 163, 171
BssNI GRCGYC 2 cut(s) 93, 168
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 179, 340
BstACI GRCGYC 2 cut(s) 93, 168
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 216, 249
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 325
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 3 cut(s) 184, 246, 336
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 109, 158
CviJI RGCY 2 cut(s) 162, 215
CviKI_1 RGCY 2 cut(s) 162, 215
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 216, 249
DinI GGCGCC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 171
Eco32I GATATC 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 2 cut(s) 112, 161
FaiI YATR 4 cut(s) 110, 159, 193, 288
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 108, 157
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 2 cut(s) 93, 168
Hin1II CATG 2 cut(s) 112, 161
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 82, 315
Hpy188III TCNNGA 2 cut(s) 20, 307
Hpy8I GTNNAC 2 cut(s) 82, 315
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 4 cut(s) 64, 109, 164, 248
HpyCH4III ACNGT 2 cut(s) 179, 340
HpyCH4IV ACGT 2 cut(s) 93, 142
HpyCH4V TGCA 6 cut(s) 116, 124, 134, 227, 269, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 216, 249
HpySE526I ACGT 2 cut(s) 93, 142
Hsp92I GRCGYC 2 cut(s) 93, 168
Hsp92II CATG 2 cut(s) 112, 161
HspAI GCGC 1 cut(s) 168
KasI GGCGCC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 120, 311
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 111, 214
MaeI CTAG 1 cut(s) 300
MaeII ACGT 2 cut(s) 93, 142
MaeIII GTNAC 3 cut(s) 94, 149, 328
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 2 cut(s) 317, 338
MluCI AATT 1 cut(s) 291
Mly113I GGCGCC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 6 cut(s) 121, 140, 158, 211, 214, 245
MseI TTAA 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 266
NarI GGCGCC 1 cut(s) 168
NlaIII CATG 2 cut(s) 112, 161
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 238
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 169
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 267
SduI GDGCHC 2 cut(s) 317, 338
SetI ASST 9 cut(s) 81, 96, 101, 132, 145, 151, 156, 189, 217
SfaNI GCATC 2 cut(s) 111, 214
SfoI GGCGCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 291
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 179, 340
TaiI ACGT 2 cut(s) 96, 145
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 346
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 3 cut(s) 184, 253, 343
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 3 cut(s) 102, 146, 303
TspRI CASTG 3 cut(s) 184, 253, 343
Van91I CCANNNNNTGG 1 cut(s) 109
VneI GTGCAC 1 cut(s) 313
XspI CTAG 1 cut(s) 300
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.