AT1G75335

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009144
Physical Location & Seq
Forward (+)
28268541 .. 28269002
462 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75335.1

Sequence Viewer

Length: 291 bp
ATGAAGACGGTCACCGGAAGAGTTAACAGTGCAAAGCCAATCTCTCTATCAAAGGCGGCTACTCTTCTCTCCGGATTCGTTTCTTCTGAGAATGGAGCCTCTCAAGATGTTAGCGCGTACCTTCGACGAGCTTCCGGTGCCTTTATTGAATTGAAGAGCATCCATAGGGAGATTAAATCAAAGGAGACGAAGCTAAGCTCTAAGAAGAAGAGGAAGAGTCATCGAGAGATGGGTTCGGAAGAGAGGAAGAAGAGTAAGAAAAAGAGAAAATCCAGCGAGATCGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

10.64

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 1 cut(s) 116
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 1 cut(s) 56
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 2 cut(s) 149, 154
AluBI AGCT 3 cut(s) 131, 193, 198
AluI AGCT 3 cut(s) 131, 193, 198
Alw26I GTCTC 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 71
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 4
BanI GGYRCC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 179
BisI GCNGC 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 97, 139
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 87
BsaWI WCCGGW 3 cut(s) 14, 71, 134
BseAI TCCGGA 1 cut(s) 71
BseGI GGATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 15, 72, 135
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 1 cut(s) 279
Bsp1720I GCTNAGC 1 cut(s) 194
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 97, 139
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 137
BssMI GATC 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 10, 29
Bst6I CTCTTC 7 cut(s) 13, 69, 149, 203, 209, 234, 245
BstDEI CTNAG 3 cut(s) 87, 194, 201
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 10
BstUI CGCG 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 6 cut(s) 37, 59, 98, 131, 193, 198
CviKI_1 RGCY 6 cut(s) 37, 59, 98, 131, 193, 198
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 3 cut(s) 87, 194, 201
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eam1104I CTCTTC 7 cut(s) 13, 69, 149, 203, 209, 234, 245
EarI CTCTTC 7 cut(s) 13, 69, 149, 203, 209, 234, 245
Eco91I GGTNACC 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 179
FaiI YATR 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 57
HapII CCGG 3 cut(s) 15, 72, 135
HhaI GCGC 1 cut(s) 116
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 75, 217
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 3 cut(s) 15, 72, 135
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 88, 238
Hpy188III TCNNGA 3 cut(s) 72, 104, 224
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 10, 29
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 87, 194, 201
HspAI GCGC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 71
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 279
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 28, 85, 148, 286
LweI GCATC 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 3 cut(s) 109, 204, 237
MroI TCCGGA 1 cut(s) 71
MseI TTAA 2 cut(s) 24, 174
MspI CCGG 3 cut(s) 15, 72, 135
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 279
NlaIV GGNNCC 2 cut(s) 97, 139
NmuCI GTSAC 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 97, 139
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 24, 174
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 279
SchI GAGTC 1 cut(s) 226
SetI ASST 4 cut(s) 123, 133, 195, 200
SfaNI GCATC 1 cut(s) 168
SgeI CNNG 8 cut(s) 27, 84, 116, 127, 140, 147, 236, 285
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 56
TaaI ACNGT 2 cut(s) 10, 29
TaqI TCGA 2 cut(s) 124, 223
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 24, 174
Tru9I TTAA 2 cut(s) 24, 174
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.