Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009144

Physical Location & Seq

Genomic Coordinates Reverse (-)

10874798 .. 10875950

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1119300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAAACGGTCTCAGGGGTCGTCGTCTCGTCGAAGCCAATCTCTCTCTCCAAAGCGACCTCCACTCTGTCCTCCTTCGTCACCAGCGACACCGGCGCGTCGCAAGAGTTCAGCGTCTACCTCCGACGCACCTTGACATCGTTCAAGGAGCTGAAGCAGCTGCACAAGGAGCTCAAATCGCCGAGGTCGGAACGGAAGCGATCGCGGCGGCACAGGTCGGAGGCCGAAAACGACGACGCAGAGACCGTCGGAGAGAATCCAGCGCAGAGTGCCGGTGTGAGTGAAGTGAGTCATGGGCTAGAGTTCAAGCCGAAAACGCAGAGACAGGTAGTGGATGCCGAGGGGAAGAAGAAGGAGAGGAAGAAGGGTGAAGTTCCTAATTTTGGGGAAGATGGAGGTGGAATTGCAGAGAGGGGAGGGGACGGTGGTGAAAAGAAAGAGGCATCTGATTCAGTAGAGGTGCCTAGGAAGAAGAAGAAGAAGAGGGACAATGATGGTAATTCTAATGAAAATGGGGGGCGAATTGACAAGGGAGATGGTGGGGTTAAAATTGCAGAGAGGGCAAATGGGGGTGTTGAAAGTAGAGAGCCGGCTGATTCAGTTGATACACAAAATAAGAAGAAGAAAAAGAGGGACAATGTTAGCAATTCCGGTGAAAATAGGGGTAAAATTAAGAAGGAAGATAGTAAGAAGAGGAAGAGTGGGGTATTAGAAGATGGAGGTTCTGATGCTTCGGAAGAACAAGGGGATAAGAAAAAGAAGAGGAGGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.13

Weight (kDa)

9.76

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75335 AT5G60030 AT5G60030 AT5G60030
fragaria_vesca	FvH4_3g34300
malus_domestica	MD03G1106700.v1.1 MD11G1119300.v1.1
prunus_persica	Prupe.6G089500_v2.0.a1
pyrus_communis	pycom03g08610 pycom11g10080
rosa_chinensis	RchiOBHm_Chr5g0061881
rosa_laevigata	RLG00000035512
rosa_multiflora	Rmu_co8277279.1_g000001 Rmu_sc0011641.1_g000011 Rmu_sc0039516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018860
rosa_samantha	Rh5BG418400 Rh5CG442900 Rh5DG432500 Rh6CG464500
rosa_wichuraiana	Rw5G038080 Rw5G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	98, 205
AciI	CCGC	2 cut(s)	205, 208
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	145, 307, 578
AluBI	AGCT	3 cut(s)	151, 160, 172
AluI	AGCT	3 cut(s)	151, 160, 172
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	4 cut(s)	16, 31, 236, 316
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	157, 160
AsiSI	GCGATCGC	1 cut(s)	203
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	98, 265
AsuHPI	GGTGA	4 cut(s)	73, 380, 440, 665
AvrII	CCTAGG	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	147, 169
BccI	CCATC	4 cut(s)	386, 488, 530, 710
BcoDI	GTCTC	4 cut(s)	16, 31, 236, 316
BfaI	CTAG	2 cut(s)	299, 465
BisI	GCNGC	4 cut(s)	158, 161, 206, 209
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	4 cut(s)	159, 162, 207, 210
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	3 cut(s)	325, 452, 718
BsaI	GGTCTC	2 cut(s)	16, 236
BsaJI	CCNNGG	3 cut(s)	182, 339, 464
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	3 cut(s)	92, 272, 589
BseDI	CCNNGG	3 cut(s)	182, 339, 464
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	147, 169
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	98, 205
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	4 cut(s)	93, 273, 590, 651
BslFI	GGGAC	3 cut(s)	434, 500, 647
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	4 cut(s)	16, 31, 236, 316
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	3 cut(s)	434, 500, 647
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	2 cut(s)	16, 236
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	200
BspACI	CCGC	2 cut(s)	205, 208
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	2 cut(s)	98, 205
BspLI	GGNNCC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	2 cut(s)	16, 236
BsrFI	RCCGGY	3 cut(s)	92, 272, 589
BssAI	RCCGGY	3 cut(s)	92, 272, 589
BssECI	CCNNGG	3 cut(s)	182, 339, 464
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	464
Bst4CI	ACNGT	3 cut(s)	10, 247, 425
Bst6I	CTCTTC	4 cut(s)	476, 686, 692, 755
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	2 cut(s)	98, 205
BstHHI	GCGC	2 cut(s)	98, 265
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	4 cut(s)	16, 31, 236, 316
BstMBI	GATC	1 cut(s)	200
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	8 cut(s)	93, 157, 169, 178, 205, 269, 316, 560
BstUI	CGCG	2 cut(s)	98, 205
BstV1I	GCAGC	2 cut(s)	147, 169
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	2 cut(s)	98, 265
Cfr10I	RCCGGY	3 cut(s)	92, 272, 589
CseI	GACGC	4 cut(s)	87, 103, 135, 245
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	9 cut(s)	37, 151, 160, 172, 224, 298, 310, 589, 593
CviKI_1	RGCY	9 cut(s)	37, 151, 160, 172, 224, 298, 310, 589, 593
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	4 cut(s)	476, 686, 692, 755
EarI	CTCTTC	4 cut(s)	476, 686, 692, 755
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	16, 236
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	464
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	296
FaiI	YATR	1 cut(s)	294
FaqI	GGGAC	3 cut(s)	434, 500, 647
FatI	CATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	158, 161, 206, 209
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	158, 161, 206, 209
FspBI	CTAG	2 cut(s)	299, 465
GlaI	GCGC	2 cut(s)	97, 264
GluI	GCNGC	4 cut(s)	158, 161, 206, 209
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	4 cut(s)	93, 273, 590, 651
HgaI	GACGC	4 cut(s)	87, 103, 135, 245
HhaI	GCGC	2 cut(s)	98, 265
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	2 cut(s)	96, 263
HinP1I	GCGC	2 cut(s)	96, 263
HinfI	GANTC	4 cut(s)	256, 289, 449, 596
HpaII	CCGG	4 cut(s)	93, 273, 590, 651
HphI	GGTGA	4 cut(s)	73, 380, 440, 665
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	7 cut(s)	125, 190, 220, 251, 448, 727, 736
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	7 cut(s)	26, 34, 103, 129, 236, 239, 251
HpyAV	CCTTC	4 cut(s)	85, 346, 358, 670
HpyCH4III	ACNGT	3 cut(s)	10, 247, 425
HpyCH4V	TGCA	3 cut(s)	163, 407, 554
HpyF10VI	GCNNNNNNNGC	8 cut(s)	93, 157, 169, 178, 205, 269, 316, 560
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	2 cut(s)	96, 263
KroI	GCCGGC	1 cut(s)	589
KroNI	GCCGGC	1 cut(s)	591
Kzo9I	GATC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	148, 169
LpnPI	CCDG	8 cut(s)	97, 106, 199, 273, 286, 311, 603, 664
Lsp1109I	GCAGC	2 cut(s)	147, 169
LweI	GCATC	3 cut(s)	325, 452, 718
MaeI	CTAG	2 cut(s)	299, 465
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	7 cut(s)	379, 402, 499, 522, 549, 646, 669
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	4 cut(s)	148, 168, 198, 229
MroNI	GCCGGC	1 cut(s)	589
MseI	TTAA	2 cut(s)	546, 672
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	4 cut(s)	93, 273, 590, 651
MvnI	CGCG	2 cut(s)	98, 205
MwoI	GCNNNNNNNGC	8 cut(s)	93, 157, 169, 178, 205, 269, 316, 560
NaeI	GCCGGC	1 cut(s)	591
NdeII	GATC	1 cut(s)	200
NgoMIV	GCCGGC	1 cut(s)	589
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	462
NmeAIII	GCCGAG	2 cut(s)	207, 364
NmuCI	GTSAC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 243
PdiI	GCCGGC	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	256, 449, 596
PkrI	GCNGC	4 cut(s)	159, 162, 207, 210
Ple19I	CGATCG	1 cut(s)	203
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	462
PvuI	CGATCG	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	160
RgaI	GCGATCGC	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	546, 672
SatI	GCNGC	4 cut(s)	158, 161, 206, 209
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	174
SfaAI	GCGATCGC	1 cut(s)	203
SfaNI	GCATC	3 cut(s)	325, 452, 718
SgfI	GCGATCGC	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	92
Sse9I	AATT	7 cut(s)	379, 402, 499, 522, 549, 646, 669
SsiI	CCGC	2 cut(s)	205, 208
SspMI	CTAG	2 cut(s)	299, 465
SstI	GAGCTC	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	10, 247, 425
TaqI	TCGA	1 cut(s)	32
TasI	AATT	7 cut(s)	379, 402, 499, 522, 549, 646, 669
TauI	GCSGC	2 cut(s)	208, 211
TfiI	GAWTC	3 cut(s)	256, 449, 596
Tru1I	TTAA	2 cut(s)	546, 672
Tru9I	TTAA	2 cut(s)	546, 672
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	157, 160
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	17, 522
TspGWI	ACGGA	1 cut(s)	208
XmaJI	CCTAGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	299, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.