Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009144

Physical Location & Seq

Genomic Coordinates Reverse (-)

6968178 .. 6968999

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAAACGGTATCGGGGATCGTCCTCTCGTCGAAGCCAATCTCTCTGTCCAAAGCGACCTCCACTCTCTCCTCCTTCGTCTCCAGCGACACCGGCGCGTCGCAAGAGTTCACCATCTACCTCCGACGCACCTTGGCATCGTTCAAGGAGCTGAAGCAACTACACAAGGAGCTCAAATCGCCGAGATCGGAAAGGAAGCGGTCGCGGCGGCACAGGTCGGAGACCGAAAACGACGACGAAGAGACCGTCGGAGAGAATCCGGCGCAGAGTACCGGTGTGAGTGAGGTGAGTCATGGGCTTGAGTCCAAGCCGGAAACGCAGCGACAGGTAGTGGATGCCCAGGTGAAGAAGAAGGAGAGGAAGAAGGGTGAAGTTCGTAAATTTGGGGAAGATGGAGGTGGAATTTCAGAGAGGGGAGGGGAGGGTGGTGAAAAGAAAGAGACAGCTGATTCAGTAGAGGTACTTAGGACGAAGAAGAAGAAGAAGAGGGACAATGTAGGTAATTCTAATGAAGATGGGGATCGAATTGAGAAGGGAGATGGCGGGGTCAAAATTGCAGAGAGGGCGAATGGCGGTGTTGAAAAGAGAGAGCCGGCTGATTCAGTTGATACACAAAATAAGAAGAAAAAGAGGGACAATGTTAGCAATTCCGGTGAAAACGGGGGTCAAATGAAGAAGGGAGATGGCGGGGCTAAAACAAGGAGCGAAGAGGTAAAGAAGGAAGAGAGTAAGAAAAGGAAGAGTGGGGTGTTAGAAGATGGAGGCTCTGGTGCTTTAGGAGGAGAGCAAGGGGATAAGAAAAAGAAGAGGAGGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

29.77

Weight (kDa)

9.72

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75335 AT5G60030 AT5G60030 AT5G60030
fragaria_vesca	FvH4_3g34300
malus_domestica	MD03G1106700.v1.1 MD11G1119300.v1.1
prunus_persica	Prupe.6G089500_v2.0.a1
pyrus_communis	pycom03g08610 pycom11g10080
rosa_chinensis	RchiOBHm_Chr5g0061881
rosa_laevigata	RLG00000035512
rosa_multiflora	Rmu_co8277279.1_g000001 Rmu_sc0011641.1_g000011 Rmu_sc0039516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018860
rosa_samantha	Rh5BG418400 Rh5CG442900 Rh5DG432500 Rh6CG464500
rosa_wichuraiana	Rw5G038080 Rw5G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	98, 205
AciI	CCGC	6 cut(s)	199, 205, 208, 543, 573, 687
AclWI	GGATC	2 cut(s)	26, 528
AcsI	RAATTY	2 cut(s)	380, 402
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	271, 462
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	145, 581
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	3 cut(s)	151, 172, 446
AluI	AGCT	3 cut(s)	151, 172, 446
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	4 cut(s)	85, 215, 236, 434
AlwI	GGATC	2 cut(s)	26, 528
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	2 cut(s)	380, 402
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AsiGI	ACCGGT	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	98, 265
AsuHPI	GGTGA	6 cut(s)	103, 298, 355, 380, 440, 665
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	6 cut(s)	122, 386, 509, 533, 677, 752
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	4 cut(s)	85, 215, 236, 434
BisI	GCNGC	3 cut(s)	206, 209, 320
BlsI	GCNGC	3 cut(s)	207, 210, 321
Bme1390I	CCNGG	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	146, 325
BpmI	CTGGAG	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	215, 236
BsaJI	CCNNGG	2 cut(s)	132, 339
BsaWI	WCCGGW	2 cut(s)	272, 650
BsaXI	ACNNNNNCTCC	1 cut(s)	802
Bse118I	RCCGGY	3 cut(s)	92, 272, 592
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	132, 339
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	519
BseRI	GAGGAG	2 cut(s)	61, 795
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	98, 205
Bsh1285I	CGRYCG	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	6 cut(s)	93, 260, 273, 311, 593, 651
BslFI	GGGAC	2 cut(s)	503, 647
BsmAI	GTCTC	4 cut(s)	85, 215, 236, 434
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	503, 647
Bso31I	GGTCTC	2 cut(s)	215, 236
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	18, 185, 520
BspACI	CCGC	6 cut(s)	199, 205, 208, 543, 573, 687
BspFNI	CGCG	2 cut(s)	98, 205
BspPI	GGATC	2 cut(s)	26, 528
BspTNI	GGTCTC	2 cut(s)	215, 236
BsrFI	RCCGGY	3 cut(s)	92, 272, 592
BssAI	RCCGGY	3 cut(s)	92, 272, 592
BssECI	CCNNGG	2 cut(s)	132, 339
BssMI	GATC	3 cut(s)	18, 185, 520
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	10, 247
Bst6I	CTCTTC	6 cut(s)	234, 479, 702, 717, 734, 800
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	2 cut(s)	98, 205
BstHHI	GCGC	2 cut(s)	98, 265
BstKTI	GATC	3 cut(s)	21, 188, 523
BstMAI	GTCTC	4 cut(s)	85, 215, 236, 434
BstMBI	GATC	3 cut(s)	18, 185, 520
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 178, 205, 316, 563
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	2 cut(s)	98, 205
BstV1I	GCAGC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	594
CfoI	GCGC	2 cut(s)	98, 265
Cfr10I	RCCGGY	3 cut(s)	92, 272, 592
CseI	GACGC	2 cut(s)	87, 135
Csp6I	GTAC	2 cut(s)	270, 461
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	2 cut(s)	270, 461
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	3 cut(s)	20, 187, 522
DpnII	GATC	3 cut(s)	18, 185, 520
Eam1104I	CTCTTC	6 cut(s)	234, 479, 702, 717, 734, 800
EarI	CTCTTC	6 cut(s)	234, 479, 702, 717, 734, 800
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	215, 236
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	296
FaiI	YATR	1 cut(s)	294
FaqI	GGGAC	2 cut(s)	503, 647
FatI	CATG	1 cut(s)	292
FauI	CCCGC	2 cut(s)	536, 680
Fnu4HI	GCNGC	3 cut(s)	206, 209, 320
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	206, 209, 320
GlaI	GCGC	2 cut(s)	97, 264
GluI	GCNGC	3 cut(s)	206, 209, 320
GsuI	CTGGAG	1 cut(s)	67
HapII	CCGG	6 cut(s)	93, 260, 273, 311, 593, 651
HgaI	GACGC	2 cut(s)	87, 135
HhaI	GCGC	2 cut(s)	98, 265
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	2 cut(s)	96, 263
HinP1I	GCGC	2 cut(s)	96, 263
HinfI	GANTC	5 cut(s)	256, 289, 302, 449, 599
HpaII	CCGG	6 cut(s)	93, 260, 273, 311, 593, 651
HphI	GGTGA	6 cut(s)	103, 298, 355, 380, 440, 665
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	5 cut(s)	125, 190, 220, 251, 409
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	6 cut(s)	34, 103, 129, 236, 239, 251
HpyAV	CCTTC	6 cut(s)	85, 346, 358, 526, 670, 712
HpyCH4III	ACNGT	2 cut(s)	10, 247
HpyCH4V	TGCA	1 cut(s)	557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 178, 205, 316, 563
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	2 cut(s)	96, 263
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	18, 185, 520
LmnI	GCTCC	3 cut(s)	148, 169, 702
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	146, 325
MalI	GATC	3 cut(s)	20, 187, 522
MboI	GATC	3 cut(s)	18, 185, 520
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	6 cut(s)	380, 402, 502, 525, 552, 646
MlyI	GAGTC	2 cut(s)	298, 311
MmeI	TCCRAC	3 cut(s)	148, 198, 229
MroNI	GCCGGC	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	6 cut(s)	93, 260, 273, 311, 593, 651
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	2 cut(s)	98, 205
MwoI	GCNNNNNNNGC	5 cut(s)	93, 178, 205, 316, 563
NaeI	GCCGGC	1 cut(s)	594
NdeII	GATC	3 cut(s)	18, 185, 520
NgoMIV	GCCGGC	1 cut(s)	592
NlaIII	CATG	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 243
PdiI	GCCGGC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	256, 449, 599
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	207, 210, 321
PleI	GAGTC	2 cut(s)	297, 310
PpsI	GAGTC	2 cut(s)	297, 310
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	271, 462
RsaNI	GTAC	2 cut(s)	270, 461
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	3 cut(s)	206, 209, 320
Sau3AI	GATC	3 cut(s)	18, 185, 520
SchI	GAGTC	2 cut(s)	298, 311
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	146, 325
SgrAI	CRCCGGYG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	6 cut(s)	380, 402, 502, 525, 552, 646
SsiI	CCGC	6 cut(s)	199, 205, 208, 543, 573, 687
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	10, 247
TaqI	TCGA	2 cut(s)	32, 523
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	6 cut(s)	380, 402, 502, 525, 552, 646
TauI	GCSGC	2 cut(s)	208, 211
TfiI	GAWTC	3 cut(s)	256, 449, 599
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	17, 525, 686
XapI	RAATTY	2 cut(s)	380, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.