Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039516.1

Orthogroup ID

OG0009144

Physical Location & Seq

Genomic Coordinates Forward (+)

489 .. 770

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgaagacagtccaaagccgtgtcctctcctccgacacaatctctctctccgacgccacctccttcctctccgacttcaacaggtccgtctgcggcggcgggggcggcgcgtcccacgagacctgctggttcgtccgacgcgccttggcctcattcgaggagctggagcagctctatcgcaagctcaaggatccaaggtccgatcgaaagggaagacaccccgggtcggagactcgaaacgacgacgtagagaccaccgttgggcagagcttcgtggcgagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.36

Weight (kDa)

6.72

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75335 AT5G60030 AT5G60030 AT5G60030
fragaria_vesca	FvH4_3g34300
malus_domestica	MD03G1106700.v1.1 MD11G1119300.v1.1
prunus_persica	Prupe.6G089500_v2.0.a1
pyrus_communis	pycom03g08610 pycom11g10080
rosa_chinensis	RchiOBHm_Chr5g0061881
rosa_laevigata	RLG00000035512
rosa_multiflora	Rmu_co8277279.1_g000001 Rmu_sc0011641.1_g000011 Rmu_sc0039516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018860
rosa_samantha	Rh5BG418400 Rh5CG442900 Rh5DG432500 Rh6CG464500
rosa_wichuraiana	Rw5G038080 Rw5G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccII	CGCG	2 cut(s)	110, 141
AciI	CCGC	4 cut(s)	93, 96, 99, 105
AclWI	GGATC	2 cut(s)	185, 198
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	226, 261
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	4 cut(s)	163, 172, 184, 270
AluI	AGCT	4 cut(s)	163, 172, 184, 270
Alw26I	GTCTC	3 cut(s)	113, 224, 245
AlwI	GGATC	2 cut(s)	185, 198
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	110, 143
AspS9I	GGNCC	2 cut(s)	84, 198
AsuC2I	CCSGG	2 cut(s)	222, 223
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	84, 198
BamHI	GGATCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	11, 220
BbvI	GCAGC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	2 cut(s)	222, 223
BcoDI	GTCTC	3 cut(s)	113, 224, 245
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	94, 97, 106, 170
BlsI	GCNGC	4 cut(s)	95, 98, 107, 171
Bme1390I	CCNGG	2 cut(s)	222, 223
Bme18I	GGWCC	2 cut(s)	84, 198
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	84, 198
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	222, 223
BpiI	GAAGAC	2 cut(s)	11, 220
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	222, 223
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	2 cut(s)	113, 245
BsaJI	CCNNGG	4 cut(s)	144, 194, 220, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 261
BseDI	CCNNGG	4 cut(s)	144, 194, 220, 221
BseLI	CCNNNNNNNGG	2 cut(s)	226, 261
BseRI	GAGGAG	2 cut(s)	19, 173
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	2 cut(s)	110, 141
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	226, 261
BsmAI	GTCTC	3 cut(s)	113, 224, 245
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	2 cut(s)	113, 245
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	190, 202
BspACI	CCGC	4 cut(s)	93, 96, 99, 105
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	110, 141
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	185, 198
BspTNI	GGTCTC	2 cut(s)	113, 245
BssECI	CCNNGG	4 cut(s)	144, 194, 220, 221
BssMI	GATC	2 cut(s)	190, 202
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	144, 194
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	10, 259
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	182, 280
BstFNI	CGCG	2 cut(s)	110, 141
BstHHI	GCGC	2 cut(s)	110, 143
BstKTI	GATC	2 cut(s)	193, 205
BstMAI	GTCTC	3 cut(s)	113, 224, 245
BstMBI	GATC	2 cut(s)	190, 202
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 105, 169
BstSCI	CCNGG	2 cut(s)	220, 221
BstUI	CGCG	2 cut(s)	110, 141
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	2 cut(s)	11, 220
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	182, 280
CfoI	GCGC	2 cut(s)	110, 143
Cfr13I	GGNCC	2 cut(s)	84, 198
Cfr9I	CCCGGG	1 cut(s)	221
CseI	GACGC	3 cut(s)	62, 99, 147
CviJI	RGCY	6 cut(s)	18, 149, 163, 172, 184, 270
CviKI_1	RGCY	6 cut(s)	18, 149, 163, 172, 184, 270
DpnI	GATC	2 cut(s)	192, 204
DpnII	GATC	2 cut(s)	190, 202
Eco130I	CCWWGG	2 cut(s)	144, 194
Eco31I	GGTCTC	2 cut(s)	113, 245
Eco47I	GGWCC	2 cut(s)	84, 198
Eco88I	CYCGRG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	144, 194
ErhI	CCWWGG	2 cut(s)	144, 194
FaqI	GGGAC	1 cut(s)	97
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	94, 97, 106, 170
Fsp4HI	GCNGC	4 cut(s)	94, 97, 106, 170
GlaI	GCGC	2 cut(s)	109, 142
GluI	GCNGC	4 cut(s)	94, 97, 106, 170
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	3 cut(s)	62, 99, 147
HhaI	GCGC	2 cut(s)	110, 143
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	2 cut(s)	108, 141
HinP1I	GCGC	2 cut(s)	108, 141
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	222
Hpy188I	TCNGA	6 cut(s)	34, 52, 73, 137, 202, 229
Hpy99I	CGWCG	4 cut(s)	56, 141, 245, 248
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	10, 259
HpyCH4IV	ACGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 105, 169
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	2 cut(s)	108, 141
Kzo9I	GATC	2 cut(s)	190, 202
LmnI	GCTCC	2 cut(s)	160, 166
LpnPI	CCDG	5 cut(s)	67, 112, 136, 149, 235
Lsp1109I	GCAGC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	246
MalI	GATC	2 cut(s)	192, 204
MboI	GATC	2 cut(s)	190, 202
MboII	GAAGA	2 cut(s)	16, 225
MflI	RGATCY	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	5 cut(s)	57, 75, 96, 160, 207
MnlI	CCTC	6 cut(s)	35, 40, 70, 77, 151, 160
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	222, 223
MvnI	CGCG	2 cut(s)	110, 141
MwoI	GCNNNNNNNGC	3 cut(s)	102, 105, 169
NciI	CCSGG	2 cut(s)	222, 223
NdeII	GATC	2 cut(s)	190, 202
NlaIV	GGNNCC	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	95, 98, 107, 171
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	84, 198
PsuI	RGATCY	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	205
SatI	GCNGC	4 cut(s)	94, 97, 106, 170
Sau3AI	GATC	2 cut(s)	190, 202
Sau96I	GGNCC	2 cut(s)	84, 198
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	222, 223
SetI	ASST	9 cut(s)	62, 86, 125, 165, 174, 186, 200, 249, 272
SinI	GGWCC	2 cut(s)	84, 198
SmaI	CCCGGG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	4 cut(s)	93, 96, 99, 105
StyD4I	CCNGG	2 cut(s)	220, 221
StyI	CCWWGG	2 cut(s)	144, 194
TaaI	ACNGT	2 cut(s)	10, 259
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	156, 205, 235
TauI	GCSGC	3 cut(s)	96, 99, 108
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	76
TspMI	CCCGGG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	84, 198
XmaI	CCCGGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.