Rroxscaffold_1G00018860

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009144
Physical Location & Seq
Reverse (-)
22976963 .. 22980239
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018860.1

Sequence Viewer

Length: 789 bp
ATGAAGACAGTGCAAAGCCGGGTCCTCTCCTCCGACCCAATCTCTCTCTCCGACGCCACCTCCTTTCTCTCCGACTTCAACAGGTCCGTCTGCGGTGGCGGGGGCGGCGCATCGGTCGGCGCGTCCCACGAGACCTGCTGGTTCGTCCGACGCGCCTTGGCCTCATTCGAGGAGCTGGAGCAGCTCTATCGCAAGCTCAAGGATCCAAGGTCCGATCGAAAGGGGAGACACCCCGGGTCGGAGACTCGAAACGACGACGTAGAGACCACCGTTGGGCAGAGCTTCGTGGCGAGCCGGGACGTGAGTGCCAAGCCCAAAAGCCACCGTCAGCGGGAGAGTGATGACGTCAATCGGAAAGTTGAGGTTGAAGAACAGAGTAAGGGTGGGAATCGTAATTTGATGGAAGATGGAGGTGAGATTGCAGAGAGGGTAGGGGTAGAGATTGATGATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAGGGAGGAAGATGGTGAGAGTGAAATGGGAAACGGAGAGGTAAAGAGGGAGATTGGTTTTCGAGATTTCGAGCAAGATGAGTCACATAATAAGAAGAAGAAGAAAAAGAAGAGGGACAATGTTGATGAAAGCTGGGGTGGAGTTAAGGAGGAAGATGGGGAAAGTGAAATGGGGAGTGAAGAGGTAAAGAGGCAAGAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGTGAGGTGTTAGACAATGGTGAGATTGATGCCTTGGAGGAACAACGGGAGAAGAGAAAGAAGAGGAGAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.93

Weight (kDa)

9.39

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 143
AccII CGCG 2 cut(s) 122, 153
AciI CCGC 4 cut(s) 93, 99, 105, 331
AclWI GGATC 2 cut(s) 197, 210
AcyI GRCGYC 2 cut(s) 54, 345
AfiI CCNNNNNNNGG 3 cut(s) 238, 273, 331
AgsI TTSAA 2 cut(s) 79, 368
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 5 cut(s) 175, 184, 196, 282, 618
AluI AGCT 5 cut(s) 175, 184, 196, 282, 618
Alw26I GTCTC 4 cut(s) 125, 220, 236, 257
AlwI GGATC 2 cut(s) 197, 210
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 3 cut(s) 110, 122, 155
AspS9I GGNCC 3 cut(s) 22, 84, 210
AsuC2I CCSGG 4 cut(s) 20, 234, 235, 296
AsuHPI GGTGA 3 cut(s) 425, 512, 743
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 3 cut(s) 22, 84, 210
BamHI GGATCC 1 cut(s) 202
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 193
BccI CCATC 4 cut(s) 394, 401, 491, 635
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BcnI CCSGG 4 cut(s) 20, 234, 235, 296
BcoDI GTCTC 4 cut(s) 125, 220, 236, 257
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 106, 182
BlsI GCNGC 2 cut(s) 107, 183
Bme1390I CCNGG 4 cut(s) 20, 234, 235, 296
Bme18I GGWCC 3 cut(s) 22, 84, 210
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 22, 84, 210
BmiI GGNNCC 2 cut(s) 23, 204
BmrFI CCNGG 4 cut(s) 20, 234, 235, 296
BmsI GCATC 2 cut(s) 119, 730
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 4 cut(s) 20, 234, 235, 296
BsaHI GRCGYC 2 cut(s) 54, 345
BsaI GGTCTC 2 cut(s) 125, 257
BsaJI CCNNGG 5 cut(s) 156, 206, 232, 233, 744
BsaXI ACNNNNNCTCC 3 cut(s) 44, 74, 769
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 273, 331
BseDI CCNNGG 5 cut(s) 156, 206, 232, 233, 744
BseLI CCNNNNNNNGG 3 cut(s) 238, 273, 331
BseRI GAGGAG 2 cut(s) 19, 185
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 618
Bsh1236I CGCG 2 cut(s) 122, 153
Bsh1285I CGRYCG 2 cut(s) 117, 217
BshFI GGCC 1 cut(s) 161
BsiEI CGRYCG 2 cut(s) 117, 217
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 19, 234, 295
BslFI GGGAC 3 cut(s) 109, 311, 614
BslI CCNNNNNNNGG 3 cut(s) 238, 273, 331
BsmAI GTCTC 4 cut(s) 125, 220, 236, 257
BsmFI GGGAC 3 cut(s) 109, 311, 614
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 2 cut(s) 125, 257
BsoBI CYCGRG 1 cut(s) 233
Bsp143I GATC 2 cut(s) 202, 214
BspACI CCGC 4 cut(s) 93, 99, 105, 331
BspANI GGCC 1 cut(s) 161
BspFNI CGCG 2 cut(s) 122, 153
BspLI GGNNCC 2 cut(s) 23, 204
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 197, 210
BspTNI GGTCTC 2 cut(s) 125, 257
BssECI CCNNGG 5 cut(s) 156, 206, 232, 233, 744
BssMI GATC 2 cut(s) 202, 214
BssNI GRCGYC 2 cut(s) 54, 345
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 3 cut(s) 156, 206, 744
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 10, 271, 326
Bst6I CTCTTC 7 cut(s) 479, 590, 660, 698, 704, 758, 767
BstACI GRCGYC 2 cut(s) 54, 345
BstC8I GCNNGC 2 cut(s) 194, 292
BstFNI CGCG 2 cut(s) 122, 153
BstHHI GCGC 3 cut(s) 110, 122, 155
BstKTI GATC 2 cut(s) 205, 217
BstMAI GTCTC 4 cut(s) 125, 220, 236, 257
BstMBI GATC 2 cut(s) 202, 214
BstMCI CGRYCG 2 cut(s) 117, 217
BstMWI GCNNNNNNNGC 2 cut(s) 105, 181
BstSCI CCNGG 4 cut(s) 18, 232, 233, 294
BstUI CGCG 2 cut(s) 122, 153
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 161
BtrI CACGTC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 194, 292
CfoI GCGC 3 cut(s) 110, 122, 155
Cfr13I GGNCC 3 cut(s) 22, 84, 210
Cfr9I CCCGGG 1 cut(s) 233
CseI GACGC 3 cut(s) 62, 111, 159
DpnI GATC 2 cut(s) 204, 216
DpnII GATC 2 cut(s) 202, 214
Eam1104I CTCTTC 7 cut(s) 479, 590, 660, 698, 704, 758, 767
EarI CTCTTC 7 cut(s) 479, 590, 660, 698, 704, 758, 767
Eco130I CCWWGG 3 cut(s) 156, 206, 744
Eco31I GGTCTC 2 cut(s) 125, 257
Eco47I GGWCC 3 cut(s) 22, 84, 210
Eco88I CYCGRG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 156, 206, 744
ErhI CCWWGG 3 cut(s) 156, 206, 744
FaiI YATR 1 cut(s) 573
FaqI GGGAC 3 cut(s) 109, 311, 614
FauI CCCGC 2 cut(s) 92, 324
Fnu4HI GCNGC 2 cut(s) 106, 182
Fsp4HI GCNGC 2 cut(s) 106, 182
GlaI GCGC 3 cut(s) 109, 121, 154
GluI GCNGC 2 cut(s) 106, 182
GsaI CCCAGC 1 cut(s) 622
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 19, 234, 295
HgaI GACGC 3 cut(s) 62, 111, 159
HhaI GCGC 3 cut(s) 110, 122, 155
Hin1I GRCGYC 2 cut(s) 54, 345
Hin6I GCGC 3 cut(s) 108, 120, 153
HinP1I GCGC 3 cut(s) 108, 120, 153
HinfI GANTC 3 cut(s) 244, 388, 566
HpaII CCGG 3 cut(s) 19, 234, 295
HphI GGTGA 3 cut(s) 425, 512, 743
Hpy188I TCNGA 7 cut(s) 34, 52, 73, 149, 214, 241, 354
Hpy188III TCNNGA 1 cut(s) 548
Hpy99I CGWCG 4 cut(s) 56, 153, 257, 260
HpyCH4III ACNGT 3 cut(s) 10, 271, 326
HpyCH4IV ACGT 3 cut(s) 258, 300, 345
HpyCH4V TGCA 2 cut(s) 13, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 181
HpySE526I ACGT 3 cut(s) 258, 300, 345
Hsp92I GRCGYC 2 cut(s) 54, 345
HspAI GCGC 3 cut(s) 108, 120, 153
Kzo9I GATC 2 cut(s) 202, 214
LmnI GCTCC 2 cut(s) 172, 178
LpnPI CCDG 8 cut(s) 32, 67, 124, 148, 161, 247, 308, 604
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 119, 730
MaeII ACGT 3 cut(s) 258, 300, 345
MaeIII GTNAC 1 cut(s) 567
MalI GATC 2 cut(s) 204, 216
MboI GATC 2 cut(s) 202, 214
MflI RGATCY 1 cut(s) 202
MluCI AATT 1 cut(s) 394
MlyI GAGTC 2 cut(s) 238, 575
MmeI TCCRAC 5 cut(s) 57, 75, 96, 172, 219
MseI TTAA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 3 cut(s) 19, 234, 295
MspR9I CCNGG 4 cut(s) 20, 234, 235, 296
MvnI CGCG 2 cut(s) 122, 153
MwoI GCNNNNNNNGC 2 cut(s) 105, 181
NciI CCSGG 4 cut(s) 20, 234, 235, 296
NdeII GATC 2 cut(s) 202, 214
NlaIV GGNNCC 2 cut(s) 23, 204
NmuCI GTSAC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 2 cut(s) 107, 183
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 2 cut(s) 238, 574
PpsI GAGTC 2 cut(s) 238, 574
PpuMI RGGWCCY 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 23, 204
PspPI GGNCC 3 cut(s) 22, 84, 210
PspPPI RGGWCCY 1 cut(s) 22
PsuI RGATCY 1 cut(s) 202
PvuI CGATCG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 2 cut(s) 106, 182
Sau3AI GATC 2 cut(s) 202, 214
Sau96I GGNCC 3 cut(s) 22, 84, 210
SchI GAGTC 2 cut(s) 238, 575
ScrFI CCNGG 4 cut(s) 20, 234, 235, 296
SfaNI GCATC 2 cut(s) 119, 730
SinI GGWCC 3 cut(s) 22, 84, 210
SmaI CCCGGG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 394
SsiI CCGC 4 cut(s) 93, 99, 105, 331
StyD4I CCNGG 4 cut(s) 18, 232, 233, 294
StyI CCWWGG 3 cut(s) 156, 206, 744
TaaI ACNGT 3 cut(s) 10, 271, 326
TaiI ACGT 3 cut(s) 261, 303, 348
TaqI TCGA 5 cut(s) 168, 217, 247, 547, 555
TaqII GACCGA 1 cut(s) 103
TasI AATT 1 cut(s) 394
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 2 cut(s) 17, 627
TspGWI ACGGA 2 cut(s) 76, 534
TspMI CCCGGG 1 cut(s) 233
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 3 cut(s) 22, 84, 210
XmaI CCCGGG 1 cut(s) 233
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.