Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009144

Physical Location & Seq

Genomic Coordinates Forward (+)

69145210 .. 69148703

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAGACAGTCCAAAGCCGTGTCCTCTCCTCCGACCCAATCTCTCTCTCCGACGCCACCTCCTTCCTCTCCGACTTCAACAGGTCCGTCTGCGGCGGCGGGGGCGGCGCGTCCCACGAGACCTGCTGGTTCGTCCGACGCGCCTTGGCCTCATTCGAGGAGCTGGAGCAGCTCTATCGCAAGCTCAAGGATCCAAGGTCCGATCGAAAGGGAAGACACCCCGGGTCGGAGACTCGAAACGACGACGTAGAGACCACCGTTGGGCAGAGCTTCGTGGCGAGCCGGGACGTGAGTGCCAAGCCCAAAAGCCACCGTCAGCGGGAGAGTGATGACGTCAATCGGAAAGTTGAGGTTGAAGAACAGAGTAAGGGTGGGAATCGTAATTTGATGGAAGATGGAGGTGAGATTGCAGAGAGGGTAGGGGTAGAGATTGATGATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAGGGAGGAAGATGGTGAGAGTGAAATGGGAAACGGAGAGGTAAAGAGGGAGATTGGTTTTCGAGATTTCGAGCAAGATGAGTCACAGAATAAGAAGAAGAAGAAAAAGAAGAGGGACAATGTTGATGAAAACTGGGGTGGAGTTAAGGAGGAAGATGGGGAAAGTGAAATGGGGAGTGAAGAGGTAAAGAGGCAAGAGAAGAAGAAGAAGAAGAGGAAGAGTGAGGTGTTAGAGAATGGTGAGATTGATGCCTTGGAGGAACAACATGAGAAGAGAAAGAAGAGGAGAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

29.37

Weight (kDa)

9.21

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75335 AT5G60030 AT5G60030 AT5G60030
fragaria_vesca	FvH4_3g34300
malus_domestica	MD03G1106700.v1.1 MD11G1119300.v1.1
prunus_persica	Prupe.6G089500_v2.0.a1
pyrus_communis	pycom03g08610 pycom11g10080
rosa_chinensis	RchiOBHm_Chr5g0061881
rosa_laevigata	RLG00000035512
rosa_multiflora	Rmu_co8277279.1_g000001 Rmu_sc0011641.1_g000011 Rmu_sc0039516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018860
rosa_samantha	Rh5BG418400 Rh5CG442900 Rh5DG432500 Rh6CG464500
rosa_wichuraiana	Rw5G038080 Rw5G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	131
AccII	CGCG	2 cut(s)	110, 141
AciI	CCGC	5 cut(s)	93, 96, 99, 105, 319
AclWI	GGATC	2 cut(s)	185, 198
AcyI	GRCGYC	2 cut(s)	54, 333
AfiI	CCNNNNNNNGG	3 cut(s)	226, 261, 319
AgsI	TTSAA	2 cut(s)	79, 356
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	4 cut(s)	163, 172, 184, 270
AluI	AGCT	4 cut(s)	163, 172, 184, 270
Alw26I	GTCTC	3 cut(s)	113, 224, 245
AlwI	GGATC	2 cut(s)	185, 198
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	110, 143
AspS9I	GGNCC	2 cut(s)	84, 198
AsuC2I	CCSGG	3 cut(s)	222, 223, 284
AsuHPI	GGTGA	3 cut(s)	413, 500, 725
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	84, 198
BamHI	GGATCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	11, 220
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	4 cut(s)	382, 389, 479, 623
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	3 cut(s)	222, 223, 284
BcoDI	GTCTC	3 cut(s)	113, 224, 245
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	94, 97, 106, 170
BlsI	GCNGC	4 cut(s)	95, 98, 107, 171
Bme1390I	CCNGG	3 cut(s)	222, 223, 284
Bme18I	GGWCC	2 cut(s)	84, 198
BmeT110I	CYCGRG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	84, 198
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	3 cut(s)	222, 223, 284
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	712
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	11, 220
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	3 cut(s)	222, 223, 284
BsaHI	GRCGYC	2 cut(s)	54, 333
BsaI	GGTCTC	2 cut(s)	113, 245
BsaJI	CCNNGG	5 cut(s)	144, 194, 220, 221, 726
BsaXI	ACNNNNNCTCC	3 cut(s)	44, 74, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 261, 319
Bse1I	ACTGG	1 cut(s)	611
BseDI	CCNNGG	5 cut(s)	144, 194, 220, 221, 726
BseLI	CCNNNNNNNGG	3 cut(s)	226, 261, 319
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	2 cut(s)	19, 173
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	2 cut(s)	110, 141
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	222, 283
BslFI	GGGAC	3 cut(s)	97, 299, 602
BslI	CCNNNNNNNGG	3 cut(s)	226, 261, 319
BsmAI	GTCTC	3 cut(s)	113, 224, 245
BsmFI	GGGAC	3 cut(s)	97, 299, 602
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	2 cut(s)	113, 245
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	190, 202
BspACI	CCGC	5 cut(s)	93, 96, 99, 105, 319
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	110, 141
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	185, 198
BspTNI	GGTCTC	2 cut(s)	113, 245
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	5 cut(s)	144, 194, 220, 221, 726
BssMI	GATC	2 cut(s)	190, 202
BssNI	GRCGYC	2 cut(s)	54, 333
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	3 cut(s)	144, 194, 726
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	10, 259, 314
Bst6I	CTCTTC	7 cut(s)	467, 578, 648, 680, 686, 740, 749
BstACI	GRCGYC	2 cut(s)	54, 333
BstC8I	GCNNGC	2 cut(s)	182, 280
BstFNI	CGCG	2 cut(s)	110, 141
BstHHI	GCGC	2 cut(s)	110, 143
BstKTI	GATC	2 cut(s)	193, 205
BstMAI	GTCTC	3 cut(s)	113, 224, 245
BstMBI	GATC	2 cut(s)	190, 202
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 105, 169
BstSCI	CCNGG	3 cut(s)	220, 221, 282
BstUI	CGCG	2 cut(s)	110, 141
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	2 cut(s)	11, 220
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	182, 280
CfoI	GCGC	2 cut(s)	110, 143
Cfr13I	GGNCC	2 cut(s)	84, 198
Cfr9I	CCCGGG	1 cut(s)	221
CseI	GACGC	3 cut(s)	62, 99, 147
CviAII	CATG	1 cut(s)	740
CviJI	RGCY	9 cut(s)	18, 149, 163, 172, 184, 270, 282, 301, 309
CviKI_1	RGCY	9 cut(s)	18, 149, 163, 172, 184, 270, 282, 301, 309
DpnI	GATC	2 cut(s)	192, 204
DpnII	GATC	2 cut(s)	190, 202
Eam1104I	CTCTTC	7 cut(s)	467, 578, 648, 680, 686, 740, 749
EarI	CTCTTC	7 cut(s)	467, 578, 648, 680, 686, 740, 749
Eco130I	CCWWGG	3 cut(s)	144, 194, 726
Eco31I	GGTCTC	2 cut(s)	113, 245
Eco47I	GGWCC	2 cut(s)	84, 198
Eco88I	CYCGRG	1 cut(s)	221
EcoT14I	CCWWGG	3 cut(s)	144, 194, 726
ErhI	CCWWGG	3 cut(s)	144, 194, 726
FaeI	CATG	1 cut(s)	743
FaiI	YATR	1 cut(s)	741
FaqI	GGGAC	3 cut(s)	97, 299, 602
FatI	CATG	1 cut(s)	739
FauI	CCCGC	2 cut(s)	92, 312
Fnu4HI	GCNGC	4 cut(s)	94, 97, 106, 170
Fsp4HI	GCNGC	4 cut(s)	94, 97, 106, 170
GlaI	GCGC	2 cut(s)	109, 142
GluI	GCNGC	4 cut(s)	94, 97, 106, 170
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	222, 283
HgaI	GACGC	3 cut(s)	62, 99, 147
HhaI	GCGC	2 cut(s)	110, 143
Hin1I	GRCGYC	2 cut(s)	54, 333
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	2 cut(s)	108, 141
HinP1I	GCGC	2 cut(s)	108, 141
HinfI	GANTC	3 cut(s)	232, 376, 554
HpaII	CCGG	2 cut(s)	222, 283
HphI	GGTGA	3 cut(s)	413, 500, 725
Hpy188I	TCNGA	7 cut(s)	34, 52, 73, 137, 202, 229, 342
Hpy188III	TCNNGA	1 cut(s)	536
Hpy99I	CGWCG	4 cut(s)	56, 141, 245, 248
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	10, 259, 314
HpyCH4IV	ACGT	3 cut(s)	246, 288, 333
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 105, 169
HpySE526I	ACGT	3 cut(s)	246, 288, 333
Hsp92I	GRCGYC	2 cut(s)	54, 333
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	2 cut(s)	108, 141
Kzo9I	GATC	2 cut(s)	190, 202
LmnI	GCTCC	2 cut(s)	160, 166
LpnPI	CCDG	7 cut(s)	67, 112, 136, 149, 235, 296, 592
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	712
MaeII	ACGT	3 cut(s)	246, 288, 333
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	2 cut(s)	192, 204
MboI	GATC	2 cut(s)	190, 202
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	226, 563
MmeI	TCCRAC	5 cut(s)	57, 75, 96, 160, 207
MseI	TTAA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	2 cut(s)	222, 283
MspR9I	CCNGG	3 cut(s)	222, 223, 284
MvnI	CGCG	2 cut(s)	110, 141
MwoI	GCNNNNNNNGC	3 cut(s)	102, 105, 169
NciI	CCSGG	3 cut(s)	222, 223, 284
NdeII	GATC	2 cut(s)	190, 202
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	95, 98, 107, 171
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	226, 562
PpsI	GAGTC	2 cut(s)	226, 562
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	84, 198
PsuI	RGATCY	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	4 cut(s)	94, 97, 106, 170
Sau3AI	GATC	2 cut(s)	190, 202
Sau96I	GGNCC	2 cut(s)	84, 198
SchI	GAGTC	2 cut(s)	226, 563
ScrFI	CCNGG	3 cut(s)	222, 223, 284
SfaNI	GCATC	1 cut(s)	712
SinI	GGWCC	2 cut(s)	84, 198
SmaI	CCCGGG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	5 cut(s)	93, 96, 99, 105, 319
StyD4I	CCNGG	3 cut(s)	220, 221, 282
StyI	CCWWGG	3 cut(s)	144, 194, 726
TaaI	ACNGT	3 cut(s)	10, 259, 314
TaiI	ACGT	3 cut(s)	249, 291, 336
TaqI	TCGA	5 cut(s)	156, 205, 235, 535, 543
TasI	AATT	1 cut(s)	382
TauI	GCSGC	3 cut(s)	96, 99, 108
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	2 cut(s)	17, 615
TspGWI	ACGGA	2 cut(s)	76, 522
TspMI	CCCGGG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	84, 198
XmaI	CCCGGG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.