Rh6CG464500

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009144
Physical Location & Seq
Forward (+)
63698837 .. 63699235
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG464500.1

Sequence Viewer

Length: 399 bp
ATGAAGACAGTGCAAAGCCGGGTCCTCTCCTCCGACCCAATCTCTCTCTCCGACGCCACCTCCTTCCTCTCCGACTTCAACAGGTCCGTCTGCGGCGGCGGGGGCGGCGCGTCTGTCAGCGCGTCCCACGAGACCTGCTGGTTCGTCCGACGCGCCTTGGCCTCATTCGAGGAGCTGGAGCAGCTCTATCGCAAGCTCAAGGATCCAAGGTCCGATCGAAAGGGAAGACACCCCAGCTCGGAGACTCGAAACGACGACGTAGAGACCACCGTTGGGCAGAGCTTCATGGCGAGCCTCGACGTGAGTGCCAAGCCCAAAAGCCACCGTCAGCGGGAGATGATGACGTCAATCAGAAAGTTGAGGTTGAAGAACAGAGTAAGGGTGGGAATCGTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

10.09

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 143
AccII CGCG 3 cut(s) 110, 122, 153
AciI CCGC 5 cut(s) 93, 96, 99, 105, 331
AclWI GGATC 2 cut(s) 197, 210
AcyI GRCGYC 2 cut(s) 54, 344
AfiI CCNNNNNNNGG 3 cut(s) 238, 273, 331
AgsI TTSAA 2 cut(s) 79, 367
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 5 cut(s) 175, 184, 196, 237, 282
AluI AGCT 5 cut(s) 175, 184, 196, 237, 282
Alw26I GTCTC 3 cut(s) 125, 236, 257
AlwI GGATC 2 cut(s) 197, 210
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 3 cut(s) 110, 122, 155
AspS9I GGNCC 3 cut(s) 22, 84, 210
AsuC2I CCSGG 1 cut(s) 20
AvaII GGWCC 3 cut(s) 22, 84, 210
BamHI GGATCC 1 cut(s) 202
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 2 cut(s) 11, 232
BbvI GCAGC 1 cut(s) 193
BcgI CGANNNNNNTGC 4 cut(s) 170, 204, 287, 321
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 125, 236, 257
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 94, 97, 106, 182
BlsI GCNGC 4 cut(s) 95, 98, 107, 183
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 22, 84, 210
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 22, 84, 210
BmiI GGNNCC 2 cut(s) 23, 204
BmrFI CCNGG 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 11, 232
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 2 cut(s) 54, 344
BsaI GGTCTC 2 cut(s) 125, 257
BsaJI CCNNGG 2 cut(s) 156, 206
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 273, 331
BseDI CCNNGG 2 cut(s) 156, 206
BseLI CCNNNNNNNGG 3 cut(s) 238, 273, 331
BseRI GAGGAG 2 cut(s) 19, 185
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 233
Bsh1236I CGCG 3 cut(s) 110, 122, 153
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 3 cut(s) 238, 273, 331
BsmAI GTCTC 3 cut(s) 125, 236, 257
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 2 cut(s) 125, 257
Bsp143I GATC 2 cut(s) 202, 214
BspACI CCGC 5 cut(s) 93, 96, 99, 105, 331
BspANI GGCC 1 cut(s) 161
BspFNI CGCG 3 cut(s) 110, 122, 153
BspLI GGNNCC 2 cut(s) 23, 204
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 197, 210
BspTNI GGTCTC 2 cut(s) 125, 257
BssECI CCNNGG 2 cut(s) 156, 206
BssMI GATC 2 cut(s) 202, 214
BssNI GRCGYC 2 cut(s) 54, 344
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 156, 206
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 10, 271, 326
BstACI GRCGYC 2 cut(s) 54, 344
BstC8I GCNNGC 2 cut(s) 194, 292
BstFNI CGCG 3 cut(s) 110, 122, 153
BstHHI GCGC 3 cut(s) 110, 122, 155
BstKTI GATC 2 cut(s) 205, 217
BstMAI GTCTC 3 cut(s) 125, 236, 257
BstMBI GATC 2 cut(s) 202, 214
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 102, 105, 181
BstSCI CCNGG 1 cut(s) 18
BstUI CGCG 3 cut(s) 110, 122, 153
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 11, 232
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 161
BtrI CACGTC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 194, 292
CfoI GCGC 3 cut(s) 110, 122, 155
Cfr13I GGNCC 3 cut(s) 22, 84, 210
CseI GACGC 4 cut(s) 62, 99, 111, 159
CviAII CATG 1 cut(s) 286
DpnI GATC 2 cut(s) 204, 216
DpnII GATC 2 cut(s) 202, 214
Eco130I CCWWGG 2 cut(s) 156, 206
Eco31I GGTCTC 2 cut(s) 125, 257
Eco47I GGWCC 3 cut(s) 22, 84, 210
EcoO109I RGGNCCY 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 156, 206
ErhI CCWWGG 2 cut(s) 156, 206
FaeI CATG 1 cut(s) 289
FaiI YATR 1 cut(s) 287
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 285
FauI CCCGC 2 cut(s) 92, 324
Fnu4HI GCNGC 4 cut(s) 94, 97, 106, 182
Fsp4HI GCNGC 4 cut(s) 94, 97, 106, 182
GlaI GCGC 3 cut(s) 109, 121, 154
GluI GCNGC 4 cut(s) 94, 97, 106, 182
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 19
HgaI GACGC 4 cut(s) 62, 99, 111, 159
HhaI GCGC 3 cut(s) 110, 122, 155
Hin1I GRCGYC 2 cut(s) 54, 344
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 3 cut(s) 108, 120, 153
HinP1I GCGC 3 cut(s) 108, 120, 153
HinfI GANTC 2 cut(s) 244, 387
HpaII CCGG 1 cut(s) 19
Hpy188I TCNGA 7 cut(s) 34, 52, 73, 149, 214, 241, 353
Hpy99I CGWCG 5 cut(s) 56, 153, 257, 260, 302
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 10, 271, 326
HpyCH4IV ACGT 3 cut(s) 258, 300, 344
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 105, 181
HpySE526I ACGT 3 cut(s) 258, 300, 344
Hsp92I GRCGYC 2 cut(s) 54, 344
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 3 cut(s) 108, 120, 153
Kzo9I GATC 2 cut(s) 202, 214
LmnI GCTCC 2 cut(s) 172, 178
LpnPI CCDG 6 cut(s) 32, 67, 124, 148, 161, 247
Lsp1109I GCAGC 1 cut(s) 193
MaeII ACGT 3 cut(s) 258, 300, 344
MalI GATC 2 cut(s) 204, 216
MboI GATC 2 cut(s) 202, 214
MboII GAAGA 3 cut(s) 16, 237, 379
MflI RGATCY 1 cut(s) 202
MluCI AATT 1 cut(s) 393
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 4 cut(s) 57, 75, 96, 172
MnlI CCTC 8 cut(s) 35, 40, 70, 77, 163, 172, 305, 354
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 20
MvnI CGCG 3 cut(s) 110, 122, 153
MwoI GCNNNNNNNGC 3 cut(s) 102, 105, 181
NciI CCSGG 1 cut(s) 20
NdeII GATC 2 cut(s) 202, 214
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 2 cut(s) 23, 204
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 4 cut(s) 95, 98, 107, 183
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 23, 204
PspPI GGNCC 3 cut(s) 22, 84, 210
PspPPI RGGWCCY 1 cut(s) 22
PsuI RGATCY 1 cut(s) 202
PvuI CGATCG 1 cut(s) 217
SatI GCNGC 4 cut(s) 94, 97, 106, 182
Sau3AI GATC 2 cut(s) 202, 214
Sau96I GGNCC 3 cut(s) 22, 84, 210
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 20
SinI GGWCC 3 cut(s) 22, 84, 210
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 393
SsiI CCGC 5 cut(s) 93, 96, 99, 105, 331
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 2 cut(s) 156, 206
TaaI ACNGT 3 cut(s) 10, 271, 326
TaiI ACGT 3 cut(s) 261, 303, 347
TaqI TCGA 4 cut(s) 168, 217, 247, 297
TasI AATT 1 cut(s) 393
TauI GCSGC 3 cut(s) 96, 99, 108
TfiI GAWTC 1 cut(s) 387
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 17, 274
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 3 cut(s) 22, 84, 210
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.