Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009144

Physical Location & Seq

Genomic Coordinates Reverse (-)

24171888 .. 24173046

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAGACTGTCACCGGAAGAGTTGTTAGTGCTGAACCAATCTCCCTCTCAAAGGCGGCTAAGCTTCTCTCTGGATTCGCTTCCTCTGATAATGGCGCCTCTCAAGACGTTAGTGCGTACCTCCGGCGAGCCTCCGCTGCCTTCACTGAATTAAAGAGTTTCCACAGGGAGATTAAATCAAAGGAGACGAAGCCAAGCTCCGATAGGGAGACTAAATCAACGGAGACGAAGCAAAGCTCCGATGCAAAGAGTGAGCGGAATGTCATTGACGAATTCGACGGTCGGAAGATTCGTTACCGGAATAGTGAAGCTGTGAGTGTGGAATCAGTTTATGGTAGGGAACGTGATGAGAAAAAGATGAAGAAGAGCAAAGACGCAGATGTTGTTGATGAGAAGGTGAACGAGAAGTTGGAAGCAGAGCAAAGGAGCGAAGAGCGAAGGGAGAGAAAGAAGGAGAAGAAGAAGAAGAAGAACAACAAAGACGAAGATGTTGTTGATGAGAAGGTGAAGGAGAAGTTAGAAGACGAGCAAAAGAGCGCAGATAGAAAGGAGCGAAAGAAGAAGAAGAGCAAGAAGAACAACGACGAAGATGTTGTTGATGAGAAGGAGAAGTTAGAAGACGAGCAAAAGAGCGCAGAGATAAAGGAGAAAAAGAAGAACAAAGACGAAGATGTTGTTGATGAGAAGGAGAAGGAGAAGTTGGAAGACGAGCAAAGGAGTGGAGAGAGAAAAAAGGAGAAGAAGAAGAAGAGGAAGAGTGATGAAGAGATCGTTTCAGAGGAGAGGAAGAGTAAGAAAAAGAGAAAGAGTGATGAAGAGATGGGTTCAGAGGAGAGGAAGAGCAAGAAAAAGAGGAAACTGAAGGAGATTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

34.15

Weight (kDa)

9.32

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75335 AT5G60030 AT5G60030 AT5G60030
fragaria_vesca	FvH4_3g34300
malus_domestica	MD03G1106700.v1.1 MD11G1119300.v1.1
prunus_persica	Prupe.6G089500_v2.0.a1
pyrus_communis	pycom03g08610 pycom11g10080
rosa_chinensis	RchiOBHm_Chr5g0061881
rosa_laevigata	RLG00000035512
rosa_multiflora	Rmu_co8277279.1_g000001 Rmu_sc0011641.1_g000011 Rmu_sc0039516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018860
rosa_samantha	Rh5BG418400 Rh5CG442900 Rh5DG432500 Rh6CG464500
rosa_wichuraiana	Rw5G038080 Rw5G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	256
AciI	CCGC	3 cut(s)	56, 135, 256
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjuI	GAANNNNNNNTTGG	4 cut(s)	392, 424, 683, 715
AluBI	AGCT	4 cut(s)	64, 198, 237, 311
AluI	AGCT	4 cut(s)	64, 198, 237, 311
Alw26I	GTCTC	3 cut(s)	179, 203, 218
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	3 cut(s)	98, 539, 635
AsuHPI	GGTGA	3 cut(s)	4, 409, 517
BanI	GGYRCC	1 cut(s)	95
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	4 cut(s)	11, 528, 624, 711
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	814
BcoDI	GTCTC	3 cut(s)	179, 203, 218
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	2 cut(s)	57, 138
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	2 cut(s)	58, 139
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	4 cut(s)	11, 528, 624, 711
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	96
BsaWI	WCCGGW	2 cut(s)	14, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	794, 845
BseXI	GCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	15, 124, 298
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	179, 203, 218
BsmBI	CGTCTC	2 cut(s)	179, 218
Bsp143I	GATC	1 cut(s)	768
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	56, 135, 256
BspLI	GGNNCC	1 cut(s)	97
BspQI	GCTCTTC	4 cut(s)	359, 426, 560, 833
BspT107I	GGYRCC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	256
BssMI	GATC	1 cut(s)	768
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	10, 281
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	3 cut(s)	98, 539, 635
BstKTI	GATC	1 cut(s)	771
BstMAI	GTCTC	3 cut(s)	179, 203, 218
BstMBI	GATC	1 cut(s)	768
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	4 cut(s)	11, 528, 624, 711
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	3 cut(s)	98, 539, 635
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	7 cut(s)	59, 64, 131, 193, 198, 237, 311
CviKI_1	RGCY	7 cut(s)	59, 64, 131, 193, 198, 237, 311
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	60
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	1 cut(s)	770
DpnII	GATC	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
Esp3I	CGTCTC	2 cut(s)	179, 218
FaiI	YATR	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	57, 138
Fsp4HI	GCNGC	2 cut(s)	57, 138
GlaI	GCGC	3 cut(s)	97, 538, 634
GluI	GCNGC	2 cut(s)	57, 138
HaeII	RGCGCY	1 cut(s)	99
HapII	CCGG	3 cut(s)	15, 124, 298
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	3 cut(s)	98, 539, 635
Hin1I	GRCGYC	1 cut(s)	96
Hin6I	GCGC	3 cut(s)	96, 537, 633
HinP1I	GCGC	3 cut(s)	96, 537, 633
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	75, 289, 323
HpaII	CCGG	3 cut(s)	15, 124, 298
HphI	GGTGA	3 cut(s)	4, 409, 517
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	6 cut(s)	88, 202, 241, 285, 778, 829
Hpy188III	TCNNGA	2 cut(s)	72, 104
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	2 cut(s)	281, 587
HpyCH4III	ACNGT	2 cut(s)	10, 281
HpyCH4IV	ACGT	2 cut(s)	108, 343
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	2 cut(s)	108, 343
Hsp92I	GRCGYC	1 cut(s)	96
HspAI	GCGC	3 cut(s)	96, 537, 633
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	768
LguI	GCTCTTC	4 cut(s)	359, 426, 560, 833
LmnI	GCTCC	4 cut(s)	203, 242, 426, 550
LpnPI	CCDG	5 cut(s)	28, 57, 137, 151, 311
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	2 cut(s)	108, 343
MaeIII	GTNAC	2 cut(s)	10, 293
MalI	GATC	1 cut(s)	770
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	768
MluCI	AATT	2 cut(s)	149, 272
Mly113I	GGCGCC	1 cut(s)	96
MmeI	TCCRAC	3 cut(s)	263, 390, 681
MseI	TTAA	2 cut(s)	152, 174
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	3 cut(s)	15, 124, 298
MwoI	GCNNNNNNNGC	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	96
NdeII	GATC	1 cut(s)	768
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	10
PciSI	GCTCTTC	4 cut(s)	359, 426, 560, 833
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	75, 289, 323
PkrI	GCNGC	2 cut(s)	58, 139
PluTI	GGCGCC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SapI	GCTCTTC	4 cut(s)	359, 426, 560, 833
SaqAI	TTAA	2 cut(s)	152, 174
SatI	GCNGC	2 cut(s)	57, 138
Sau3AI	GATC	1 cut(s)	768
SetI	ASST	9 cut(s)	66, 111, 123, 200, 239, 313, 346, 399, 507
SfaNI	GCATC	1 cut(s)	232
SfoI	GGCGCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	149, 272
SsiI	CCGC	3 cut(s)	56, 135, 256
SspDI	GGCGCC	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	10, 281
TaiI	ACGT	2 cut(s)	111, 346
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	149, 272
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	75, 289, 323
Tru1I	TTAA	2 cut(s)	152, 174
Tru9I	TTAA	2 cut(s)	152, 174
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	17, 374, 777, 828
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.