Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009144

Physical Location & Seq

Genomic Coordinates Reverse (-)

8424958 .. 8425782

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAAACGGTCTCAGGGATCGTCGTCTCGTCGAAGCCAATCTCTCTCTCCAAGGCGACCTCCACTCTGTCCTCCTTCGTCACCAGCGACACCGGTGCGTCGCAAGAGTTCAGCGTCTACCTCCGACGCACCTTGACATCGTTCAAGGAGCTGAAGCAGCTGCACAAGGAGCTCAAATCACCGAGGTCGGAACGGAAGCAATCGCGGCGGTACAGGTCGGAGACCGAAAACGACGACGCAGAGACCGTCGGAGAGAATCCAGCTCAAAGTGCCGGTGTGAGTGAAGTGAGTCATGGGCTCGAGTTCAAGCCGAAAACGCAGCGACAGGTAGTGGATGCCGAGGGGAAGAAGAAGGAGAGGAAGAAGGGTGAAGTTCGTAATTTTGGGGAAGATGGAGGTGGAATTGCAGAGAGGGGAGGGGACGGTGGTGAAAAGAAAGAGGCATCTGATTCAGTAGAGGTACCTAGGAAGAAGAAGAAGAAGAAGAAGGACACTGATGGTAATTCTAATGAAAATGGAGGGCAAATTGACAAGGGAGATGCTGGGGCTAAAATTGCAGAGAGGGCAAATGGGGGTGTTGAAAGGAGAGAGCCGGCTGATTCAGTTGATACACAAAATAAGAAGAAGAAAAAGAGGGACAATGTTAGCAATTCCGGTGAAAACAGGAAGGAGGAGAGTAAGAAGCGGAAGAGTGGGGTATTAGAAGATGGAGGTTCTGATGCTTCGGAAGAACAAGGGGATAAGAAAAAGAAGAAGAGGAGGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.06

Weight (kDa)

9.72

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75335 AT5G60030 AT5G60030 AT5G60030
fragaria_vesca	FvH4_3g34300
malus_domestica	MD03G1106700.v1.1 MD11G1119300.v1.1
prunus_persica	Prupe.6G089500_v2.0.a1
pyrus_communis	pycom03g08610 pycom11g10080
rosa_chinensis	RchiOBHm_Chr5g0061881
rosa_laevigata	RLG00000035512
rosa_multiflora	Rmu_co8277279.1_g000001 Rmu_sc0011641.1_g000011 Rmu_sc0039516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018860
rosa_samantha	Rh5BG418400 Rh5CG442900 Rh5DG432500 Rh6CG464500
rosa_wichuraiana	Rw5G038080 Rw5G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	205
AciI	CCGC	3 cut(s)	205, 208, 685
AclWI	GGATC	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	212, 462
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	145, 307, 581
AluBI	AGCT	4 cut(s)	151, 160, 172, 263
AluI	AGCT	4 cut(s)	151, 160, 172, 263
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	4 cut(s)	16, 31, 215, 236
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	157, 160, 319
AsiGI	ACCGGT	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	460
AspA2I	CCTAGG	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	73, 171, 380, 440, 668
AvaI	CYCGRG	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	2 cut(s)	174, 300
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	147, 169, 331
BccI	CCATC	3 cut(s)	386, 491, 701
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BcoDI	GTCTC	4 cut(s)	16, 31, 215, 236
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	4 cut(s)	158, 161, 206, 320
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	4 cut(s)	159, 162, 207, 321
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	4 cut(s)	325, 452, 529, 709
BsaI	GGTCTC	3 cut(s)	16, 215, 236
BsaJI	CCNNGG	4 cut(s)	51, 182, 339, 464
BsaWI	WCCGGW	2 cut(s)	92, 653
BsaXI	ACNNNNNCTCC	1 cut(s)	751
Bse118I	RCCGGY	3 cut(s)	92, 272, 592
BseDI	CCNNGG	4 cut(s)	51, 182, 339, 464
BseGI	GGATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	3 cut(s)	147, 169, 331
BseYI	CCCAGC	1 cut(s)	542
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	460
BshTI	ACCGGT	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	93, 273, 593, 654
BslFI	GGGAC	2 cut(s)	434, 650
BsmAI	GTCTC	4 cut(s)	16, 31, 215, 236
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	2 cut(s)	434, 650
Bso31I	GGTCTC	3 cut(s)	16, 215, 236
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	174, 300
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	205, 208, 685
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	3 cut(s)	16, 215, 236
BsrFI	RCCGGY	3 cut(s)	92, 272, 592
BssAI	RCCGGY	3 cut(s)	92, 272, 592
BssECI	CCNNGG	4 cut(s)	51, 182, 339, 464
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	51, 464
Bst4CI	ACNGT	3 cut(s)	10, 247, 425
Bst6I	CTCTTC	2 cut(s)	683, 749
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	4 cut(s)	16, 31, 215, 236
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	7 cut(s)	157, 169, 205, 269, 316, 554, 563
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	147, 169, 331
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	594
Cfr10I	RCCGGY	3 cut(s)	92, 272, 592
CseI	GACGC	4 cut(s)	87, 103, 135, 245
Csp6I	GTAC	2 cut(s)	211, 461
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	2 cut(s)	211, 461
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	683, 749
EarI	CTCTTC	2 cut(s)	683, 749
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	51, 464
Eco24I	GRGCYC	2 cut(s)	174, 300
Eco31I	GGTCTC	3 cut(s)	16, 215, 236
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	51, 464
EcoT38I	GRGCYC	2 cut(s)	174, 300
ErhI	CCWWGG	2 cut(s)	51, 464
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	296
FaiI	YATR	1 cut(s)	294
FaqI	GGGAC	2 cut(s)	434, 650
FatI	CATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	158, 161, 206, 320
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	174, 300
Fsp4HI	GCNGC	4 cut(s)	158, 161, 206, 320
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	4 cut(s)	158, 161, 206, 320
GsaI	CCCAGC	1 cut(s)	546
HapII	CCGG	4 cut(s)	93, 273, 593, 654
HgaI	GACGC	4 cut(s)	87, 103, 135, 245
Hin1II	CATG	1 cut(s)	296
HinfI	GANTC	4 cut(s)	256, 289, 449, 599
HpaII	CCGG	4 cut(s)	93, 273, 593, 654
HphI	GGTGA	5 cut(s)	73, 171, 380, 440, 668
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	7 cut(s)	125, 190, 220, 251, 448, 718, 727
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	7 cut(s)	26, 34, 103, 129, 236, 239, 251
HpyAV	CCTTC	5 cut(s)	85, 346, 358, 481, 661
HpyCH4III	ACNGT	3 cut(s)	10, 247, 425
HpyCH4V	TGCA	3 cut(s)	163, 407, 557
HpyF10VI	GCNNNNNNNGC	7 cut(s)	157, 169, 205, 269, 316, 554, 563
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	148, 169
Lsp1109I	GCAGC	3 cut(s)	147, 169, 331
LweI	GCATC	4 cut(s)	325, 452, 529, 709
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	174, 300
MluCI	AATT	6 cut(s)	379, 402, 502, 525, 552, 649
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	4 cut(s)	148, 168, 198, 229
MroNI	GCCGGC	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	4 cut(s)	93, 273, 593, 654
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	7 cut(s)	157, 169, 205, 269, 316, 554, 563
NaeI	GCCGGC	1 cut(s)	594
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	592
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 243
PdiI	GCCGGC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	256, 449, 599
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	159, 162, 207, 321
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	462
PspXI	VCTCGAGB	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	212, 462
RsaNI	GTAC	2 cut(s)	211, 461
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	4 cut(s)	158, 161, 206, 320
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	174, 300
SfaNI	GCATC	4 cut(s)	325, 452, 529, 709
Sfr274I	CTCGAG	1 cut(s)	299
SgrAI	CRCCGGYG	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	6 cut(s)	379, 402, 502, 525, 552, 649
SsiI	CCGC	3 cut(s)	205, 208, 685
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	51, 464
TaaI	ACNGT	3 cut(s)	10, 247, 425
TaqI	TCGA	2 cut(s)	32, 300
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	6 cut(s)	379, 402, 502, 525, 552, 649
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	256, 449, 599
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	3 cut(s)	157, 160, 319
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	17, 525
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	299
XmaJI	CCTAGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.