Rw5G038080

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0009144
Physical Location & Seq
Forward (+)
67311059 .. 67311826
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038080.1

Sequence Viewer

Length: 768 bp
ATGAAGACAGTGCAAAGCCGTGTCCTCTCCTCCGACCCAATCTCTCTCTCCGACGCCACCTCCTTCCTCTCCGACTTCAACAGGTCCGTCTGCGGCGGCGGGGGCGGCGCGTCCCACGAGACCTGCTGGTTCGTGCGACGCGCCTTGGCCTCATTCGAGGAGCTGGAGCAGCTCTATCGCAAGCTCAAGGATCCAAGGTCCGATCGAAAGGGAAGACACCCCGGGTCGGAGACTCGAAACGACGACGTAGAGACCACCGTTGGGCAGAGCTTCGTGGCGAGCCGGGACGTGAGTGCCAAGCCCAAAAGCCACCGTCAGCGGGAGAGTGATGACGTCAATCGGAAAGTTGAGGTTGAAGAACAGAGTAAGGGTGGGAATCGTAATTTGATGGAAGATGGAGGTGAGATTGCAGAGAGGGTAGGGGTAGAGATTGATGATAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAGGGAGGAAGATGGTGAGAGTGAAATGGGAAACGGAGAGGTAAAGAGGGAGATTGGTTTTCGAGATTTCGAGCAAGATGAGTCACAGAATAAGAAGAAGAAGAAAAAGAAGAGGGACAATGTTGATGAAAACTGGGGTGGAGTTAAGGAGGAAGATGGGGAAAGTGAAATGGGGAGTGAAGAGGTAAAGAGGCAAGAGAAGAAGAAGAAGAAGAAGAGGAAGAGTGAGGTGTTAGAGAATGGTGAGATTGATGCCTTGGAGGAACAACATGAGAAGAGAAAGAAGAGGAGAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.25

Weight (kDa)

9.14

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 131
AccII CGCG 2 cut(s) 110, 141
AciI CCGC 5 cut(s) 93, 96, 99, 105, 319
AclWI GGATC 2 cut(s) 185, 198
AcyI GRCGYC 2 cut(s) 54, 333
AfiI CCNNNNNNNGG 3 cut(s) 226, 261, 319
AgsI TTSAA 2 cut(s) 79, 356
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 4 cut(s) 163, 172, 184, 270
AluI AGCT 4 cut(s) 163, 172, 184, 270
Alw26I GTCTC 3 cut(s) 113, 224, 245
AlwI GGATC 2 cut(s) 185, 198
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 2 cut(s) 110, 143
AspS9I GGNCC 2 cut(s) 84, 198
AsuC2I CCSGG 3 cut(s) 222, 223, 284
AsuHPI GGTGA 3 cut(s) 413, 494, 722
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 84, 198
BamHI GGATCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 11, 220
BbvI GCAGC 1 cut(s) 181
BccI CCATC 4 cut(s) 382, 389, 473, 617
BceAI ACGGC 1 cut(s) 3
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcnI CCSGG 3 cut(s) 222, 223, 284
BcoDI GTCTC 3 cut(s) 113, 224, 245
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 94, 97, 106, 170
BlsI GCNGC 4 cut(s) 95, 98, 107, 171
Bme1390I CCNGG 3 cut(s) 222, 223, 284
Bme18I GGWCC 2 cut(s) 84, 198
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 84, 198
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 3 cut(s) 222, 223, 284
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 1 cut(s) 709
BmuI ACTGGG 1 cut(s) 610
BpiI GAAGAC 2 cut(s) 11, 220
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 3 cut(s) 222, 223, 284
BsaHI GRCGYC 2 cut(s) 54, 333
BsaI GGTCTC 2 cut(s) 113, 245
BsaJI CCNNGG 5 cut(s) 144, 194, 220, 221, 723
BsaXI ACNNNNNCTCC 3 cut(s) 44, 74, 748
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 261, 319
Bse1I ACTGG 1 cut(s) 605
BseDI CCNNGG 5 cut(s) 144, 194, 220, 221, 723
BseLI CCNNNNNNNGG 3 cut(s) 226, 261, 319
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 2 cut(s) 19, 173
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 2 cut(s) 110, 141
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 2 cut(s) 222, 283
BslFI GGGAC 3 cut(s) 97, 299, 596
BslI CCNNNNNNNGG 3 cut(s) 226, 261, 319
BsmAI GTCTC 3 cut(s) 113, 224, 245
BsmFI GGGAC 3 cut(s) 97, 299, 596
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 2 cut(s) 113, 245
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 2 cut(s) 190, 202
BspACI CCGC 5 cut(s) 93, 96, 99, 105, 319
BspANI GGCC 1 cut(s) 149
BspFNI CGCG 2 cut(s) 110, 141
BspLI GGNNCC 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 185, 198
BspTNI GGTCTC 2 cut(s) 113, 245
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 5 cut(s) 144, 194, 220, 221, 723
BssMI GATC 2 cut(s) 190, 202
BssNI GRCGYC 2 cut(s) 54, 333
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 3 cut(s) 144, 194, 723
Bst2BI CACGAG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 10, 259, 314
Bst6I CTCTTC 7 cut(s) 461, 572, 642, 677, 683, 737, 746
BstACI GRCGYC 2 cut(s) 54, 333
BstC8I GCNNGC 2 cut(s) 182, 280
BstFNI CGCG 2 cut(s) 110, 141
BstHHI GCGC 2 cut(s) 110, 143
BstKTI GATC 2 cut(s) 193, 205
BstMAI GTCTC 3 cut(s) 113, 224, 245
BstMBI GATC 2 cut(s) 190, 202
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 102, 105, 169
BstSCI CCNGG 3 cut(s) 220, 221, 282
BstUI CGCG 2 cut(s) 110, 141
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 11, 220
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 149
BtrI CACGTC 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 182, 280
CfoI GCGC 2 cut(s) 110, 143
Cfr13I GGNCC 2 cut(s) 84, 198
Cfr9I CCCGGG 1 cut(s) 221
CseI GACGC 3 cut(s) 62, 99, 147
CviAII CATG 1 cut(s) 737
CviJI RGCY 9 cut(s) 18, 149, 163, 172, 184, 270, 282, 301, 309
CviKI_1 RGCY 9 cut(s) 18, 149, 163, 172, 184, 270, 282, 301, 309
DpnI GATC 2 cut(s) 192, 204
DpnII GATC 2 cut(s) 190, 202
Eam1104I CTCTTC 7 cut(s) 461, 572, 642, 677, 683, 737, 746
EarI CTCTTC 7 cut(s) 461, 572, 642, 677, 683, 737, 746
Eco130I CCWWGG 3 cut(s) 144, 194, 723
Eco31I GGTCTC 2 cut(s) 113, 245
Eco47I GGWCC 2 cut(s) 84, 198
Eco88I CYCGRG 1 cut(s) 221
EcoT14I CCWWGG 3 cut(s) 144, 194, 723
ErhI CCWWGG 3 cut(s) 144, 194, 723
FaeI CATG 1 cut(s) 740
FaiI YATR 1 cut(s) 738
FaqI GGGAC 3 cut(s) 97, 299, 596
FatI CATG 1 cut(s) 736
FauI CCCGC 2 cut(s) 92, 312
Fnu4HI GCNGC 4 cut(s) 94, 97, 106, 170
Fsp4HI GCNGC 4 cut(s) 94, 97, 106, 170
GlaI GCGC 2 cut(s) 109, 142
GluI GCNGC 4 cut(s) 94, 97, 106, 170
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 149
HapII CCGG 2 cut(s) 222, 283
HgaI GACGC 3 cut(s) 62, 99, 147
HhaI GCGC 2 cut(s) 110, 143
Hin1I GRCGYC 2 cut(s) 54, 333
Hin1II CATG 1 cut(s) 740
Hin6I GCGC 2 cut(s) 108, 141
HinP1I GCGC 2 cut(s) 108, 141
HinfI GANTC 3 cut(s) 232, 376, 548
HpaII CCGG 2 cut(s) 222, 283
HphI GGTGA 3 cut(s) 413, 494, 722
Hpy188I TCNGA 6 cut(s) 34, 52, 73, 202, 229, 342
Hpy188III TCNNGA 1 cut(s) 530
Hpy99I CGWCG 4 cut(s) 56, 141, 245, 248
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 10, 259, 314
HpyCH4IV ACGT 3 cut(s) 246, 288, 333
HpyCH4V TGCA 2 cut(s) 13, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 105, 169
HpySE526I ACGT 3 cut(s) 246, 288, 333
Hsp92I GRCGYC 2 cut(s) 54, 333
Hsp92II CATG 1 cut(s) 740
HspAI GCGC 2 cut(s) 108, 141
Kzo9I GATC 2 cut(s) 190, 202
LmnI GCTCC 2 cut(s) 160, 166
LpnPI CCDG 7 cut(s) 67, 112, 136, 149, 235, 296, 586
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 709
MaeII ACGT 3 cut(s) 246, 288, 333
MaeIII GTNAC 1 cut(s) 549
MalI GATC 2 cut(s) 192, 204
MboI GATC 2 cut(s) 190, 202
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 382
MlyI GAGTC 2 cut(s) 226, 557
MmeI TCCRAC 4 cut(s) 57, 75, 96, 207
MseI TTAA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 222, 283
MspR9I CCNGG 3 cut(s) 222, 223, 284
MvnI CGCG 2 cut(s) 110, 141
MwoI GCNNNNNNNGC 3 cut(s) 102, 105, 169
NciI CCSGG 3 cut(s) 222, 223, 284
NdeII GATC 2 cut(s) 190, 202
NlaIII CATG 1 cut(s) 740
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 4 cut(s) 95, 98, 107, 171
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 226, 556
PpsI GAGTC 2 cut(s) 226, 556
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 84, 198
PsuI RGATCY 1 cut(s) 190
PvuI CGATCG 1 cut(s) 205
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 4 cut(s) 94, 97, 106, 170
Sau3AI GATC 2 cut(s) 190, 202
Sau96I GGNCC 2 cut(s) 84, 198
SchI GAGTC 2 cut(s) 226, 557
ScrFI CCNGG 3 cut(s) 222, 223, 284
SfaNI GCATC 1 cut(s) 709
SinI GGWCC 2 cut(s) 84, 198
SmaI CCCGGG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 382
SsiI CCGC 5 cut(s) 93, 96, 99, 105, 319
StyD4I CCNGG 3 cut(s) 220, 221, 282
StyI CCWWGG 3 cut(s) 144, 194, 723
TaaI ACNGT 3 cut(s) 10, 259, 314
TaiI ACGT 3 cut(s) 249, 291, 336
TaqI TCGA 5 cut(s) 156, 205, 235, 529, 537
TasI AATT 1 cut(s) 382
TauI GCSGC 3 cut(s) 96, 99, 108
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 549
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 2 cut(s) 17, 609
TspGWI ACGGA 2 cut(s) 76, 516
TspMI CCCGGG 1 cut(s) 221
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 84, 198
XmaI CCCGGG 1 cut(s) 221
ZraI GACGTC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.