Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Forward (+)

29298243 .. 29300945

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAGCCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGTCCCAATACTGCTACTTCCTCTATTATTCAGGTTGATCCTAGAATTGATGATCACAACAACAACATCAAGATAAATTATGATTCTTCTCATAACCAGATCGAAGCAGAACAACCTTCTAGTAATGATAATCAAGATGATGATGGCAGGATTCATGATAAGATGAAACGGCGTTTAGCGCAGAACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAGCAGTTAGAGGAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGTTAAGCAGCAGGGCCATTTAGGACCATCTGGGAGTATTAACACAGGGATTGCATCATTTGAGATGGAATATTCACACTGGCTACAAGAACAAAGCAGAAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATAAGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCTAATCTTTTCCAAATGAAATCCGATGCAGCAAAAGCCGATGTTTTCTACTTGATATCGGGAATGTGGCGAACTTCAACCGAAAGATTCTTCCAATGGATTGGAGGGTTTCGTCCATCCGAACTTTTAAACGTTGTGATGCCTTATCTTCAACCATTAACGGATCAACAAATCTTGGAAGTGAGAAACCTCCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACAGAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTCCACGCATTATCCCACTCACATGGCTGCAGCTATAGAGAATCTTCAAGCATTAGAAGGATTTGTGAATCAAGCAGATCATCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTAACGACAAGACAATCGGCTCGAGGTTTACTAGCTTTAGGAGAGTATCTTCATAGACTTCGTGCTCTTAGTTCTCTTTGGGCAGCTCGTCCACAAGAACCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

368

Amino Acids

41.91

Weight (kDa)

5.97

Isoelectric Point (pI)

74.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	92 - 134	9.3e-08	bZIP transcription factor
DOG1	PF14144	170 - 244	5.4e-31	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	311, 872
AclI	AACGTT	1 cut(s)	723
AclWI	GGATC	2 cut(s)	149, 762
AfeI	AGCGCT	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	8 cut(s)	68, 97, 533, 583, 669, 743, 839, 929
AluBI	AGCT	4 cut(s)	851, 914, 1034, 1085
AluI	AGCT	4 cut(s)	851, 914, 1034, 1085
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	2 cut(s)	36, 822
AlwI	GGATC	2 cut(s)	149, 762
Ama87I	CYCGRG	1 cut(s)	1020
Aor51HI	AGCGCT	1 cut(s)	528
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	412, 620, 908, 911, 1082
AspLEI	GCGC	2 cut(s)	298, 529
AspS9I	GGNCC	2 cut(s)	418, 428
AvaI	CYCGRG	1 cut(s)	1020
AvaII	GGWCC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	1066
BbvI	GCAGC	5 cut(s)	424, 632, 895, 923, 1094
BccI	CCATC	4 cut(s)	254, 439, 463, 715
BceAI	ACGGC	1 cut(s)	302
BclI	TGATCA	2 cut(s)	112, 169
BcoDI	GTCTC	2 cut(s)	36, 822
BfaI	CTAG	4 cut(s)	159, 237, 566, 1031
BfmI	CTRYAG	2 cut(s)	909, 915
BfoI	RGCGCY	1 cut(s)	530
BglII	AGATCT	1 cut(s)	996
BisI	GCNGC	6 cut(s)	312, 413, 621, 909, 912, 1083
BlsI	GCNGC	6 cut(s)	313, 414, 622, 910, 913, 1084
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	1020
BmgT120I	GGNCC	2 cut(s)	418, 428
BmsI	GCATC	7 cut(s)	41, 467, 552, 607, 720, 799, 859
BpuEI	CTTGAG	2 cut(s)	542, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	488
BseGI	GGATG	2 cut(s)	707, 814
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	956
BseNI	ACTGG	1 cut(s)	488
BseXI	GCAGC	5 cut(s)	424, 632, 895, 923, 1094
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiHKCI	CYCGRG	1 cut(s)	1020
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	36, 822
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	1020
Bsp1286I	GDGCHC	1 cut(s)	1066
Bsp143I	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
BspACI	CCGC	2 cut(s)	311, 872
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	957
BspHI	TCATGA	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	2 cut(s)	149, 762
BsrFI	RCCGGY	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	366
BssMI	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
Bst6I	CTCTTC	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	965, 1067
BstF5I	GGATG	2 cut(s)	707, 814
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	2 cut(s)	298, 529
BstKTI	GATC	7 cut(s)	115, 157, 172, 219, 757, 961, 999
BstMAI	GTCTC	2 cut(s)	36, 822
BstMBI	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 388, 626, 809
BstSFI	CTRYAG	2 cut(s)	909, 915
BstV1I	GCAGC	5 cut(s)	424, 632, 895, 923, 1094
BstX2I	RGATCY	1 cut(s)	996
BstXI	CCANNNNNNTGG	2 cut(s)	692, 904
BstYI	RGATCY	1 cut(s)	996
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	707, 814
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	316
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	2 cut(s)	298, 529
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	418, 428
CviAII	CATG	3 cut(s)	46, 272, 904
DdeI	CTNAG	2 cut(s)	965, 1067
DpnI	GATC	7 cut(s)	114, 156, 171, 218, 756, 960, 998
DpnII	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
DraI	TTTAAA	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco32I	GATATC	2 cut(s)	106, 648
Eco47I	GGWCC	1 cut(s)	428
Eco47III	AGCGCT	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	1020
EcoRV	GATATC	2 cut(s)	106, 648
FaeI	CATG	3 cut(s)	49, 275, 907
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	3 cut(s)	45, 271, 903
FbaI	TGATCA	2 cut(s)	112, 169
Fnu4HI	GCNGC	6 cut(s)	312, 413, 621, 909, 912, 1083
FokI	GGATG	2 cut(s)	694, 821
Fsp4HI	GCNGC	6 cut(s)	312, 413, 621, 909, 912, 1083
FspBI	CTAG	4 cut(s)	159, 237, 566, 1031
GlaI	GCGC	2 cut(s)	297, 528
GluI	GCNGC	6 cut(s)	312, 413, 621, 909, 912, 1083
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	2 cut(s)	298, 529
Hin1II	CATG	3 cut(s)	49, 275, 907
Hin6I	GCGC	2 cut(s)	296, 527
HinP1I	GCGC	2 cut(s)	296, 527
HinfI	GANTC	7 cut(s)	51, 200, 268, 678, 881, 922, 949
HpaII	CCGG	1 cut(s)	367
Hpy166II	GTNNAC	3 cut(s)	885, 1028, 1091
Hpy188I	TCNGA	4 cut(s)	103, 616, 712, 966
Hpy188III	TCNNGA	5 cut(s)	187, 251, 272, 559, 651
Hpy8I	GTNNAC	3 cut(s)	885, 1028, 1091
HpyAV	CCTTC	3 cut(s)	243, 331, 932
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	5 cut(s)	32, 458, 620, 911, 982
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 388, 626, 809
HpyF3I	CTNAG	2 cut(s)	965, 1067
HpySE526I	ACGT	1 cut(s)	723
Hsp92II	CATG	3 cut(s)	49, 275, 907
HspAI	GCGC	2 cut(s)	296, 527
Ksp22I	TGATCA	2 cut(s)	112, 169
Kzo9I	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
LpnPI	CCDG	8 cut(s)	134, 227, 250, 380, 401, 420, 435, 469
Lsp1109I	GCAGC	5 cut(s)	424, 632, 895, 923, 1094
LweI	GCATC	7 cut(s)	41, 467, 552, 607, 720, 799, 859
MaeI	CTAG	4 cut(s)	159, 237, 566, 1031
MaeII	ACGT	1 cut(s)	723
MalI	GATC	7 cut(s)	114, 156, 171, 218, 756, 960, 998
MboI	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
MboII	GAAGA	9 cut(s)	3, 6, 195, 516, 673, 731, 917, 1006, 1040
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	1 cut(s)	1066
MluCI	AATT	3 cut(s)	72, 162, 193
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	2 cut(s)	44, 808
MnlI	CCTC	7 cut(s)	148, 352, 689, 791, 799, 960, 1016
MseI	TTAA	8 cut(s)	38, 371, 408, 444, 719, 749, 1001, 1105
MslI	CAYNNNNRTG	1 cut(s)	902
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	4 cut(s)	295, 388, 626, 809
NdeII	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
NlaIII	CATG	3 cut(s)	49, 275, 907
PaeR7I	CTCGAG	1 cut(s)	1020
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PfeI	GAWTC	6 cut(s)	51, 200, 268, 678, 922, 949
PkrI	GCNGC	6 cut(s)	313, 414, 622, 910, 913, 1084
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
Psp1406I	AACGTT	1 cut(s)	723
PspPI	GGNCC	2 cut(s)	418, 428
PspXI	VCTCGAGB	1 cut(s)	1020
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	1 cut(s)	996
RseI	CAYNNNNRTG	1 cut(s)	902
SaqAI	TTAA	8 cut(s)	38, 371, 408, 444, 719, 749, 1001, 1105
SatI	GCNGC	6 cut(s)	312, 413, 621, 909, 912, 1083
Sau3AI	GATC	7 cut(s)	112, 154, 169, 216, 754, 958, 996
Sau96I	GGNCC	2 cut(s)	418, 428
SchI	GAGTC	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	1066
SfaNI	GCATC	7 cut(s)	41, 467, 552, 607, 720, 799, 859
SfcI	CTRYAG	2 cut(s)	909, 915
Sfr274I	CTCGAG	1 cut(s)	1020
SinI	GGWCC	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	1020
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	3 cut(s)	557, 819, 1020
SmoI	CTYRAG	3 cut(s)	557, 819, 1020
Sse9I	AATT	3 cut(s)	72, 162, 193
SsiI	CCGC	2 cut(s)	311, 872
SspI	AATATT	1 cut(s)	476
SspMI	CTAG	4 cut(s)	159, 237, 566, 1031
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	4 cut(s)	219, 399, 879, 1021
TasI	AATT	3 cut(s)	72, 162, 193
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	6 cut(s)	51, 200, 268, 678, 922, 949
Tru1I	TTAA	8 cut(s)	38, 371, 408, 444, 719, 749, 1001, 1105
Tru9I	TTAA	8 cut(s)	38, 371, 408, 444, 719, 749, 1001, 1105
TscAI	CASTG	1 cut(s)	488
TseI	GCWGC	5 cut(s)	412, 620, 908, 911, 1082
TspDTI	ATGAA	4 cut(s)	260, 296, 623, 1040
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	1020
XspI	CTAG	4 cut(s)	159, 237, 566, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.