Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Forward (+)

68491804 .. 68493863

Gene Structure 2060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG506200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGATACAATGGAATTGTGAATTCAGGGATCACTACATTTGAGTTGGAATATGGACACTGGGTAGAAGAGCAGCATAGACAGAATAATGAACTTCGAAAAGCATTGCAAGAACATGCAACTGAAATAGAGCTTCGATTACTTGTAGAAGGTGGTTTGAACCACTATGCTACTCTGTTCCGTATGAAGGCAGATGCTGCTAGGGCTGATATCTTTTACTTACTGTCTGGTATATGGAGAACATCAGTAGAACGTTACTTTCACTGGATTGGAGGATTTCGCCCATCAGAGCTTCTAAATATTCTCGAGCCCCAACTTGAGCCATTGACTGATCCACAACCTCTGGATCTCTATAACCTGCGGCAATCATCTCAGCAAGCTGAAGACGCTCTCTCACAGGGAATGGATAAACTACAGCAGACACTGGCCAAGACATTAGAAGCTGATCAAATATGGAACGGAGAAACTTATGGATCTCAGATGGCTGCTGCATTTGAGAAATTTGAAGCACTGGAGAGCTTTGTTAGCCAGGCTGATCACCTTCGGCAGCAGACTCTGCAGCAAATGTCCCGAATCCTGACAACTCACCAAGCGGCTCGCGGCTTGCTTGCATTAGGAGAGTACTTTGAGCGTCTTCGTGCCCTCAGTTCTCTTTGGGCTGCTCGTCCACGTGAACCAACCGAGTCATATGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

232

Amino Acids

26.66

Weight (kDa)

5.2

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	29 - 103	1.4e-28	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccII	CGCG	1 cut(s)	600
AciI	CCGC	3 cut(s)	361, 593, 600
AclI	AACGTT	1 cut(s)	253
AclWI	GGATC	4 cut(s)	38, 326, 354, 481
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	22, 500
AcuI	CTGAAG	1 cut(s)	402
AcvI	CACGTG	1 cut(s)	671
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	160, 506
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	5 cut(s)	133, 292, 380, 443, 519
AluI	AGCT	5 cut(s)	133, 292, 380, 443, 519
AlwI	GGATC	4 cut(s)	38, 326, 354, 481
AlwNI	CAGNNNCTG	3 cut(s)	197, 424, 556
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	7 cut(s)	73, 197, 485, 488, 547, 559, 659
ApoI	RAATTY	2 cut(s)	22, 500
AsuHPI	GGTGA	2 cut(s)	530, 578
AsuII	TTCGAA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	671
BbsI	GAAGAC	2 cut(s)	390, 626
BbvI	GCAGC	7 cut(s)	85, 184, 472, 475, 559, 571, 646
BccI	CCATC	2 cut(s)	292, 475
BcgI	CGANNNNNNTGC	1 cut(s)	671
BciT130I	CCWGG	1 cut(s)	530
BclI	TGATCA	2 cut(s)	445, 535
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	2 cut(s)	413, 557
BfuAI	ACCTGC	1 cut(s)	366
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	530
BmeT110I	CYCGRG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	390, 626
BpmI	CTGGAG	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	4 cut(s)	65, 269, 429, 516
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	3 cut(s)	386, 491, 658
BseNI	ACTGG	4 cut(s)	65, 269, 429, 516
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	7 cut(s)	85, 184, 472, 475, 559, 571, 646
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	312, 643
Bsp143I	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
BspACI	CCGC	3 cut(s)	361, 593, 600
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	3 cut(s)	385, 490, 657
BspFNI	CGCG	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	4 cut(s)	38, 326, 354, 481
BspQI	GCTCTTC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	65, 269, 429, 516
BssMI	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	2 cut(s)	197, 556
BstBAI	YACGTR	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	378, 598, 605, 609
BstDEI	CTNAG	3 cut(s)	372, 477, 644
BstFNI	CGCG	1 cut(s)	600
BstKTI	GATC	6 cut(s)	33, 334, 349, 448, 476, 538
BstMBI	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 203, 386, 525, 556
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	2 cut(s)	413, 557
BstSLI	GKGCMC	1 cut(s)	643
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	7 cut(s)	85, 184, 472, 475, 559, 571, 646
BstV2I	GAAGAC	2 cut(s)	390, 626
BstX2I	RGATCY	2 cut(s)	346, 473
BstYI	RGATCY	2 cut(s)	346, 473
BsuRI	GGCC	1 cut(s)	428
BtsIMutI	CAGTG	4 cut(s)	58, 262, 422, 509
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	4 cut(s)	378, 598, 605, 609
CaiI	CAGNNNCTG	3 cut(s)	197, 424, 556
CseI	GACGC	2 cut(s)	395, 620
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	3 cut(s)	372, 477, 644
DpnI	GATC	6 cut(s)	32, 333, 348, 447, 475, 537
DpnII	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	402
Eco72I	CACGTG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	312
FaeI	CATG	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	688
FbaI	TGATCA	2 cut(s)	445, 535
FriOI	GRGCYC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	428
HgaI	GACGC	2 cut(s)	395, 620
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	3 cut(s)	553, 573, 683
HphI	GGTGA	2 cut(s)	530, 578
Hpy166II	GTNNAC	2 cut(s)	668, 674
Hpy188I	TCNGA	2 cut(s)	289, 480
Hpy188III	TCNNGA	4 cut(s)	305, 344, 570, 577
Hpy8I	GTNNAC	2 cut(s)	668, 674
HpyAV	CCTTC	3 cut(s)	143, 181, 551
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	2 cut(s)	253, 670
HpyCH4V	TGCA	6 cut(s)	109, 119, 491, 559, 611, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 203, 386, 525, 556
HpyF3I	CTNAG	3 cut(s)	372, 477, 644
HpySE526I	ACGT	2 cut(s)	253, 670
Hsp92II	CATG	1 cut(s)	119
Ksp22I	TGATCA	2 cut(s)	445, 535
Kzo9I	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
LguI	GCTCTTC	1 cut(s)	63
Lsp1109I	GCAGC	7 cut(s)	85, 184, 472, 475, 559, 571, 646
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	253, 670
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	6 cut(s)	32, 333, 348, 447, 475, 537
MboI	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
MboII	GAAGA	3 cut(s)	80, 395, 626
MflI	RGATCY	2 cut(s)	346, 473
MhlI	GDGCHC	2 cut(s)	312, 643
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	3 cut(s)	15, 22, 500
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	547, 692
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	266, 351, 653
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	5 cut(s)	197, 203, 386, 525, 556
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
NlaIII	CATG	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	573
PleI	GAGTC	2 cut(s)	547, 691
PmaCI	CACGTG	1 cut(s)	671
PmlI	CACGTG	1 cut(s)	671
PpsI	GAGTC	2 cut(s)	547, 691
Ppu21I	YACGTR	1 cut(s)	671
Psp1406I	AACGTT	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	528
PspCI	CACGTG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	528
PstI	CTGCAG	1 cut(s)	561
PstNI	CAGNNNCTG	3 cut(s)	197, 424, 556
PsuI	RGATCY	2 cut(s)	346, 473
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SapI	GCTCTTC	1 cut(s)	63
Sau3AI	GATC	6 cut(s)	30, 331, 346, 445, 473, 535
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	2 cut(s)	547, 692
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	312, 643
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	2 cut(s)	413, 557
Sfr274I	CTCGAG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	97
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	305, 317
SmoI	CTYRAG	2 cut(s)	305, 317
Sse9I	AATT	3 cut(s)	15, 22, 500
SsiI	CCGC	3 cut(s)	361, 593, 600
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	2 cut(s)	256, 673
TaqI	TCGA	3 cut(s)	97, 136, 306
TasI	AATT	3 cut(s)	15, 22, 500
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	3 cut(s)	364, 596, 603
TfiI	GAWTC	1 cut(s)	573
TscAI	CASTG	4 cut(s)	65, 269, 429, 516
TseI	GCWGC	7 cut(s)	73, 197, 485, 488, 547, 559, 659
TspDTI	ATGAA	2 cut(s)	105, 200
TspGWI	ACGGA	2 cut(s)	170, 474
TspRI	CASTG	4 cut(s)	65, 269, 429, 516
XapI	RAATTY	2 cut(s)	22, 500
XceI	RCATGY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	305
XspI	CTAG	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.