Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Forward (+)

67774843 .. 67776815

Gene Structure 1973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG473800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAATCTTGCAGGGATCACTACATTTGAGTTGGAATATGGACACTGGGTAGAAGAGCAGCATAGACAGAATAATGAACTTCGAAAAGCATTGCAAGAACATGCAACTGAAATAGAGCTTCGATTACTTGTAGAAGGTGGTTTGAACCACTATGCTACTCTGTTCCGTATGAAGGCAGATGCTGCTAGGGCTGATATCTTTTACTTACTGTCTGGTATATGGAGAACATCAGTAGAACGTTACTTTCACTGGATTGGAGGATTTCGCCCATCAGAGCTTCTAAATATTCTCGAGCCCCAACTTGAGCCATTGACTGATCCACAACCTCTGGATCTCTATAACCTGCGGCAATCATCTCAGCAAGCTGAAGACGCTCTCTCACAGGGAATGGATAAACTACAGCAGACACTGGCCAAGACATTAGAAGCTGATCAAATATGGAACGGAGAAACTTATGGATCTCAGATGGCTGCTGCATTTGAGAAATTTGAAGCACTGGAGAGCTTTGTTAGCCAGGTAATGATGCCAGTGCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

179

Amino Acids

20.56

Weight (kDa)

4.77

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	24 - 98	7.7e-29	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AciI	CCGC	1 cut(s)	346
AclI	AACGTT	1 cut(s)	238
AclWI	GGATC	4 cut(s)	23, 311, 339, 466
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	145, 491
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	5 cut(s)	118, 277, 365, 428, 504
AluI	AGCT	5 cut(s)	118, 277, 365, 428, 504
AlwI	GGATC	4 cut(s)	23, 311, 339, 466
AlwNI	CAGNNNCTG	2 cut(s)	182, 409
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	4 cut(s)	58, 182, 470, 473
ApoI	RAATTY	1 cut(s)	485
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	70, 169, 457, 460
BccI	CCATC	2 cut(s)	277, 460
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	430
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	5 cut(s)	59, 183, 347, 471, 474
BlsI	GCNGC	5 cut(s)	60, 184, 348, 472, 475
Bme1390I	CCNGG	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	169, 513
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	5 cut(s)	50, 254, 414, 501, 527
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	371, 476
BseNI	ACTGG	5 cut(s)	50, 254, 414, 501, 527
BseXI	GCAGC	4 cut(s)	70, 169, 457, 460
BshFI	GGCC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	5 cut(s)	15, 316, 331, 430, 458
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	370, 475
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	4 cut(s)	23, 311, 339, 466
BspQI	GCTCTTC	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	5 cut(s)	50, 254, 414, 501, 527
BssMI	GATC	5 cut(s)	15, 316, 331, 430, 458
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	357, 462
BstKTI	GATC	5 cut(s)	18, 319, 334, 433, 461
BstMBI	GATC	5 cut(s)	15, 316, 331, 430, 458
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 188, 371, 510
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	4 cut(s)	70, 169, 457, 460
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	331, 458
BstYI	RGATCY	2 cut(s)	331, 458
BsuRI	GGCC	1 cut(s)	413
BtsIMutI	CAGTG	5 cut(s)	43, 247, 407, 494, 534
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	2 cut(s)	182, 409
CseI	GACGC	1 cut(s)	380
CviAII	CATG	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	357, 462
DpnI	GATC	5 cut(s)	17, 318, 333, 432, 460
DpnII	GATC	5 cut(s)	15, 316, 331, 430, 458
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	1 cut(s)	104
FatI	CATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	5 cut(s)	59, 183, 347, 471, 474
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	5 cut(s)	59, 183, 347, 471, 474
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	5 cut(s)	59, 183, 347, 471, 474
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	413
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	274, 465
Hpy188III	TCNNGA	3 cut(s)	290, 329, 537
HpyAV	CCTTC	2 cut(s)	128, 166
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	11, 94, 104, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 188, 371, 510
HpyF3I	CTNAG	2 cut(s)	357, 462
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	15, 316, 331, 430, 458
LguI	GCTCTTC	1 cut(s)	48
Lsp1109I	GCAGC	4 cut(s)	70, 169, 457, 460
LweI	GCATC	2 cut(s)	169, 513
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	5 cut(s)	17, 318, 333, 432, 460
MboI	GATC	5 cut(s)	15, 316, 331, 430, 458
MboII	GAAGA	2 cut(s)	65, 380
MflI	RGATCY	2 cut(s)	331, 458
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	1 cut(s)	485
MluNI	TGGCCA	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	2 cut(s)	251, 336
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	4 cut(s)	182, 188, 371, 510
NdeII	GATC	5 cut(s)	15, 316, 331, 430, 458
NlaIII	CATG	1 cut(s)	104
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	60, 184, 348, 472, 475
Psp1406I	AACGTT	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PstNI	CAGNNNCTG	2 cut(s)	182, 409
PsuI	RGATCY	2 cut(s)	331, 458
SapI	GCTCTTC	1 cut(s)	48
SatI	GCNGC	5 cut(s)	59, 183, 347, 471, 474
Sau3AI	GATC	5 cut(s)	15, 316, 331, 430, 458
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	2 cut(s)	169, 513
SfcI	CTRYAG	1 cut(s)	398
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	290, 302
SmoI	CTYRAG	2 cut(s)	290, 302
Sse9I	AATT	1 cut(s)	485
SsiI	CCGC	1 cut(s)	346
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	3 cut(s)	82, 121, 291
TasI	AATT	1 cut(s)	485
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	5 cut(s)	50, 254, 414, 501, 534
TseI	GCWGC	4 cut(s)	58, 182, 470, 473
TspDTI	ATGAA	3 cut(s)	17, 90, 185
TspGWI	ACGGA	2 cut(s)	155, 459
TspRI	CASTG	5 cut(s)	50, 254, 414, 501, 534
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.