Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Forward (+)

28377699 .. 28381623

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38390.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTTCAAGAGAGTATGAGCTATCCATCAACGCAATTTGCTTCCTCAAGACAAATGGGGATATATGAGCCTTTCCGGCAGGTGGGTGTTTGGAGAGAAACCTTCAGTGGTGGTAACAGCTCAAACATAGGTGCTTCCACAATTGTAGAGGTGGATTCTAGGATAGATAACAAGATCGGATTTGGTTCTCCTGAACCGATGGGACCTTCTGGAAATGATCAAGAATCAAACAGATCTGCTGATAAGGTACAGAGACGCTTAGAGCAAAATCGTGAAGCTGCACGCAAAAGTCGTATGCGGAAAAAGGCTTATGTCCAACAACTAGAAACAAGCCGTTTTAAACTGGCACAACTGGAGCTGGAACTGGACAGAACTAGAAAACAGGCTGCTTATGGAGGCAGTTCATTTGGTGGTAGTCATATGGGATACAATGGAATTGTGAGTTCAGGGATCACTACATTTGAGCTGGAATATGGACACTGGGTAGAAGAGCAACATAGACAAAATATTGAACTTCGAAATGCATTGCAAGAACATGCAACTGAAATAGAACTTCGAATACTTGTAGAAGGTGGCTTGAACCACTATGCTACTCTTTTCCGCATGAAGGCAGATGCTGCTAAGGCTGATATCTTTTACTTGCTGTCTGGTATATGGAGAACATCAGTAGAACGGTACTTTCACTGGATTGGAGGATTTCGCCCATCGGAGCTTCTAAATATTCTCGAGTCCCAACTTGAGCCATTGACTGAGCCACAGAGTCTGGATTTTTATAACCTAAAGCAATCATCTCAGCAAGCCGAAGATGCTCTCTCACAGGGAATGGATAAACTGCAGCAGACACTGGCCAAGACATTAGAAGCTGATCAAATATTGAGTGGAGAAACATATGGATCTCAGATGGCTGCTGCAATTGAGAAATTTGAAGCACTGGAAAGCTTTGTTAGCCAGGCTGATCACCTTCGGCAGCAGACTCTGCAGCAAATGTCCAGAATCCTCACGACTCACCAAGCGGCTCGCGGTTTGCTTGCATTAGGAGAGTACTTTCAGCGGCTTCGTGCCCTCAGTTCTCTTTGGACTGCTCGTCCACGCGAACCCCCAGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

370

Amino Acids

41.73

Weight (kDa)

6.13

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	75 - 107	9.5e-08	bZIP transcription factor
DOG1	PF14144	166 - 238	4.4e-28	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccII	CGCG	2 cut(s)	1020, 1092
AciI	CCGC	5 cut(s)	298, 601, 1013, 1020, 1051
AclWI	GGATC	2 cut(s)	458, 901
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	1 cut(s)	920
AcuI	CTGAAG	1 cut(s)	88
AfaI	GTAC	3 cut(s)	249, 677, 1043
AfiI	CCNNNNNNNGG	2 cut(s)	82, 607
AgsI	TTSAA	4 cut(s)	8, 512, 580, 926
AhdI	GACNNNNNGTC	1 cut(s)	1083
AjnI	CCWGG	1 cut(s)	948
AluBI	AGCT	8 cut(s)	21, 120, 278, 358, 466, 712, 863, 939
AluI	AGCT	8 cut(s)	21, 120, 278, 358, 466, 712, 863, 939
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	458, 901
AlwNI	CAGNNNCTG	4 cut(s)	617, 763, 844, 976
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	1 cut(s)	846
ApeKI	GCWGC	9 cut(s)	278, 386, 617, 835, 905, 908, 967, 979, 1103
ApoI	RAATTY	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	950, 998
AsuII	TTCGAA	2 cut(s)	517, 556
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	1063
BalI	TGGCCA	1 cut(s)	848
BbvI	GCAGC	8 cut(s)	265, 373, 604, 847, 892, 895, 979, 991
BccI	CCATC	4 cut(s)	34, 193, 712, 895
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	950
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	3 cut(s)	217, 865, 955
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	4 cut(s)	159, 323, 375, 1108
BfmI	CTRYAG	2 cut(s)	833, 977
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	419
BglI	GCCNNNNNGGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	1043
Bme1390I	CCNGG	1 cut(s)	950
Bme18I	GGWCC	1 cut(s)	203
BmeRI	GACNNNNNGTC	1 cut(s)	1083
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	950
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	604, 796
BmuI	ACTGGG	1 cut(s)	490
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	2 cut(s)	517, 556
BpuEI	CTTGAG	2 cut(s)	31, 758
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 607
Bse1I	ACTGG	7 cut(s)	348, 357, 369, 485, 689, 849, 936
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	950
BseLI	CCNNNNNNNGG	2 cut(s)	82, 607
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	4 cut(s)	741, 806, 911, 1078
BseNI	ACTGG	7 cut(s)	348, 357, 369, 485, 689, 849, 936
BseSI	GKGCMC	1 cut(s)	1063
BseXI	GCAGC	8 cut(s)	265, 373, 604, 847, 892, 895, 979, 991
BseYI	CCCAGC	1 cut(s)	1099
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	1020, 1092
BshFI	GGCC	1 cut(s)	848
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	2 cut(s)	216, 715
BslI	CCNNNNNNNGG	2 cut(s)	82, 607
BsmAI	GTCTC	1 cut(s)	247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	216, 715
BsnI	GGCC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	725
Bsp119I	TTCGAA	2 cut(s)	517, 556
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp143I	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
BspACI	CCGC	5 cut(s)	298, 601, 1013, 1020, 1051
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	4 cut(s)	742, 805, 910, 1077
BspFNI	CGCG	2 cut(s)	1020, 1092
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	2 cut(s)	837, 981
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	458, 901
BspQI	GCTCTTC	1 cut(s)	483
BspT104I	TTCGAA	2 cut(s)	517, 556
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	7 cut(s)	348, 357, 369, 485, 689, 849, 936
BssMI	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	483
BstAPI	GCANNNNNTGC	2 cut(s)	617, 976
BstBI	TTCGAA	2 cut(s)	517, 556
BstC8I	GCNNGC	4 cut(s)	283, 798, 1018, 1029
BstDEI	CTNAG	6 cut(s)	259, 621, 750, 792, 897, 1064
BstFNI	CGCG	2 cut(s)	1020, 1092
BstKTI	GATC	7 cut(s)	177, 220, 236, 453, 868, 896, 958
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 617, 623, 806, 945, 976
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	2 cut(s)	833, 977
BstSLI	GKGCMC	1 cut(s)	1063
BstUI	CGCG	2 cut(s)	1020, 1092
BstV1I	GCAGC	8 cut(s)	265, 373, 604, 847, 892, 895, 979, 991
BstX2I	RGATCY	2 cut(s)	233, 893
BstYI	RGATCY	2 cut(s)	233, 893
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	848
BtsIMutI	CAGTG	5 cut(s)	112, 478, 682, 842, 929
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	283, 798, 1018, 1029
CaiI	CAGNNNCTG	4 cut(s)	617, 763, 844, 976
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	3 cut(s)	248, 676, 1042
CviAII	CATG	2 cut(s)	536, 604
CviQI	GTAC	3 cut(s)	248, 676, 1042
DdeI	CTNAG	6 cut(s)	259, 621, 750, 792, 897, 1064
DpnI	GATC	7 cut(s)	176, 219, 235, 452, 867, 895, 957
DpnII	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
DraI	TTTAAA	1 cut(s)	340
DriI	GACNNNNNGTC	1 cut(s)	1083
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	1083
EarI	CTCTTC	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	948
EcoRV	GATATC	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	2 cut(s)	539, 607
FaqI	GGGAC	2 cut(s)	216, 715
FatI	CATG	2 cut(s)	535, 603
FauNDI	CATATG	2 cut(s)	420, 889
FbaI	TGATCA	3 cut(s)	217, 865, 955
FspBI	CTAG	4 cut(s)	159, 323, 375, 1108
GsaI	CCCAGC	1 cut(s)	1103
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	539, 607
HindIII	AAGCTT	1 cut(s)	937
HinfI	GANTC	7 cut(s)	155, 224, 728, 760, 973, 993, 1003
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	2 cut(s)	950, 998
Hpy166II	GTNNAC	1 cut(s)	1088
Hpy188I	TCNGA	3 cut(s)	179, 709, 900
Hpy8I	GTNNAC	1 cut(s)	1088
HpyAV	CCTTC	5 cut(s)	112, 216, 563, 601, 971
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4V	TGCA	8 cut(s)	281, 524, 529, 539, 835, 911, 979, 1031
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 617, 623, 806, 945, 976
HpyF3I	CTNAG	6 cut(s)	259, 621, 750, 792, 897, 1064
Hsp92II	CATG	2 cut(s)	539, 607
Ksp22I	TGATCA	3 cut(s)	217, 865, 955
Kzo9I	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	355, 709
Lsp1109I	GCAGC	8 cut(s)	265, 373, 604, 847, 892, 895, 979, 991
LweI	GCATC	2 cut(s)	604, 796
MaeI	CTAG	4 cut(s)	159, 323, 375, 1108
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	7 cut(s)	176, 219, 235, 452, 867, 895, 957
MboI	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
MboII	GAAGA	2 cut(s)	500, 815
MfeI	CAATTG	2 cut(s)	141, 912
MflI	RGATCY	2 cut(s)	233, 893
MhlI	GDGCHC	1 cut(s)	1063
MlsI	TGGCCA	1 cut(s)	848
MluCI	AATT	5 cut(s)	35, 141, 435, 912, 920
MluNI	TGGCCA	1 cut(s)	848
MlyI	GAGTC	4 cut(s)	737, 769, 967, 997
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	55, 142, 389, 686, 1007, 1073
Mox20I	TGGCCA	1 cut(s)	848
Mph1103I	ATGCAT	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	848
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	848
MspA1I	CMGCKG	1 cut(s)	1051
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	950
MunI	CAATTG	2 cut(s)	141, 912
MvaI	CCWGG	1 cut(s)	950
MvnI	CGCG	2 cut(s)	1020, 1092
MwoI	GCNNNNNNNGC	6 cut(s)	76, 617, 623, 806, 945, 976
NdeI	CATATG	2 cut(s)	420, 889
NdeII	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
NlaIII	CATG	2 cut(s)	539, 607
NlaIV	GGNNCC	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	539
NspV	TTCGAA	2 cut(s)	517, 556
PaeR7I	CTCGAG	1 cut(s)	725
PaqCI	CACCTGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	155, 224, 993
PleI	GAGTC	4 cut(s)	736, 768, 967, 997
PpsI	GAGTC	4 cut(s)	736, 768, 967, 997
PpuMI	RGGWCCY	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	948
PspFI	CCCAGC	1 cut(s)	1099
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	203
PspPPI	RGGWCCY	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	543, 575
PstI	CTGCAG	2 cut(s)	837, 981
PstNI	CAGNNNCTG	4 cut(s)	617, 763, 844, 976
PsuI	RGATCY	2 cut(s)	233, 893
RsaI	GTAC	3 cut(s)	249, 677, 1043
RsaNI	GTAC	3 cut(s)	248, 676, 1042
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	7 cut(s)	174, 217, 233, 450, 865, 893, 955
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	1043
SchI	GAGTC	4 cut(s)	737, 769, 967, 997
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	1 cut(s)	1063
SfaNI	GCATC	2 cut(s)	604, 796
SfcI	CTRYAG	2 cut(s)	833, 977
Sfr274I	CTCGAG	1 cut(s)	725
SfuI	TTCGAA	2 cut(s)	517, 556
SinI	GGWCC	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	725
SmlI	CTYRAG	3 cut(s)	46, 725, 737
SmoI	CTYRAG	3 cut(s)	46, 725, 737
Sse9I	AATT	5 cut(s)	35, 141, 435, 912, 920
SsiI	CCGC	5 cut(s)	298, 601, 1013, 1020, 1051
SspI	AATATT	3 cut(s)	508, 721, 873
SspMI	CTAG	4 cut(s)	159, 323, 375, 1108
StyD4I	CCNGG	1 cut(s)	948
TaaI	ACNGT	1 cut(s)	675
TaqI	TCGA	3 cut(s)	517, 556, 726
TasI	AATT	5 cut(s)	35, 141, 435, 912, 920
TatI	WGTACW	1 cut(s)	1041
TauI	GCSGC	2 cut(s)	1016, 1054
TfiI	GAWTC	3 cut(s)	155, 224, 993
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	5 cut(s)	112, 485, 689, 849, 936
TseI	GCWGC	9 cut(s)	278, 386, 617, 835, 905, 908, 967, 979, 1103
TspDTI	ATGAA	2 cut(s)	393, 620
TspRI	CASTG	5 cut(s)	112, 485, 689, 849, 936
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	920
XceI	RCATGY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	725
XspI	CTAG	4 cut(s)	159, 323, 375, 1108
ZrmI	AGTACT	1 cut(s)	1043
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.