Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Reverse (-)

14364159 .. 14367039

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCTTCCACTTTTGCTGGAGTAGGCATGTTACAAGAGAGTATGAGCTATCCATCAACTCAGTTTGCCACCTCAAGACAAATGGGGATATACGAGCCGTTCCGCCAGGTTGATGTGTGGAAAGAAACCTTGAGAGGTGATCACGGCTCTAACACAGCTGCTTCCTCAATTATAGAAGTGGATTCTGGGATCGAAACCAAGTTTGGATTTGTTTCTCATGAATCCATGATGCCTTCTGGCAATGATCATGAACCGAACAGATCGGCTGATAAGGTACGGAGACGGTTAGAACAAAATCGTGAAGCTGCACGTAAGAGTCGTATGCGAAAAAAAGCTTATGTTCAACAACTCGAAACAAGCCGCTTAAAACTAGCACAGCTGGAGCAGGAACTTGACAAAGCTAGAAAACAGGGTGCCTATGCAGGCAATGCATTAGGTACTAGTCATATGGGATACAATGGAGCTTTGAATTCAGGGATCACTACATTTGAGATGGAATATAGACACTGGGTTGAAGAACAATACAGACAGAATGTTGAACTCAGAAATGCACTGCAAGATCATGTAACGGACATAGAACTGCTGAAACTCGTGAAGGGTGCCTTGAACCATTACGCCAATCTTTTCCGAATGAAGGCAGATGCAGCAACGGCTGATGTCTTTTACTTACTGTCTGGCATATGGCGAACATCAGTTGAACGCTATTTTCATTGGATTGGAGGATTTCGCCCCTCAGAGCTGCTAAACATTGTGTTGCCGCAGCTTCAGCCATTGACTGATCAACAACTTTTGGATTTCTGTAACCTGCGGCTATCGTCTCAGCAAGCGGAGGATGCTCTCTCGCAGGGTATGGACAAACTGCAGCAGACATTGGCACTCAGCATAGCAGCTGATCAAATGAGTGGAGAAAGTTTCGGATCTCAGATGGCTTCTGCACTTGAGAAGTTGGAAGCACTAGAGAACTTTGTCAGCCAGGCAGATCACCTTCGGCAGCAAACACTGCAGCAAATGTCTCGAATCCTCACAACATACCAAGCAGCGCAAGCCTTGCTTGCAATGGGGGAGTACTTTCACCGGCTACGTGCCCTCAGTTCTCTTTGGACTGCTCGTCCCCGTGAACCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

376

Amino Acids

42.48

Weight (kDa)

6.57

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	813
AccB1I	GGYRCC	2 cut(s)	413, 599
AciI	CCGC	5 cut(s)	103, 361, 758, 808, 827
AclWI	GGATC	3 cut(s)	197, 485, 925
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	3 cut(s)	276, 439, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	634
AgsI	TTSAA	6 cut(s)	344, 469, 515, 539, 607, 698
AhdI	GACNNNNNGTC	1 cut(s)	1107
AhlI	ACTAGT	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	105, 972
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
Alw26I	GTCTC	3 cut(s)	274, 822, 1017
AlwI	GGATC	3 cut(s)	197, 485, 925
ApoI	RAATTY	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	1042
AsuHPI	GGTGA	3 cut(s)	149, 974, 1064
BaeGI	GKGCMC	1 cut(s)	1087
BanI	GGYRCC	2 cut(s)	413, 599
BauI	CACGAG	1 cut(s)	590
BccI	CCATC	3 cut(s)	61, 487, 919
BceAI	ACGGC	3 cut(s)	82, 160, 666
BcgI	CGANNNNNNTGC	2 cut(s)	995, 1029
BciT130I	CCWGG	2 cut(s)	107, 974
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	4 cut(s)	139, 244, 778, 892
BcoDI	GTCTC	3 cut(s)	274, 822, 1017
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	4 cut(s)	371, 402, 441, 956
BfmI	CTRYAG	2 cut(s)	860, 1001
BfuAI	ACCTGC	1 cut(s)	813
BfuI	GTATCC	1 cut(s)	446
BmcAI	AGTACT	1 cut(s)	1067
Bme1390I	CCNGG	2 cut(s)	107, 974
BmeRI	GACNNNNNGTC	1 cut(s)	1107
BmiI	GGNNCC	2 cut(s)	415, 601
BmrFI	CCNGG	2 cut(s)	107, 974
BmrI	ACTGGG	1 cut(s)	517
BmsI	GCATC	3 cut(s)	219, 631, 823
BmuI	ACTGGG	1 cut(s)	517
BpmI	CTGGAG	2 cut(s)	39, 401
BpuEI	CTTGAG	3 cut(s)	58, 151, 959
BsaAI	YACGTR	2 cut(s)	311, 1082
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse118I	RCCGGY	1 cut(s)	1074
Bse1I	ACTGG	1 cut(s)	512
Bse3DI	GCAATG	3 cut(s)	247, 433, 1062
BseBI	CCWGG	2 cut(s)	107, 974
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMI	GCAATG	3 cut(s)	247, 433, 1062
BseMII	CTCAG	7 cut(s)	74, 556, 747, 833, 892, 935, 1102
BseNI	ACTGG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	1087
BsgI	GTGCAG	2 cut(s)	291, 918
BshNI	GGYRCC	2 cut(s)	413, 599
BsiSI	CCGG	1 cut(s)	1075
BslFI	GGGAC	1 cut(s)	1095
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	3 cut(s)	274, 822, 1017
BsmBI	CGTCTC	2 cut(s)	274, 822
BsmFI	GGGAC	1 cut(s)	1095
Bsp1286I	GDGCHC	1 cut(s)	1087
BspACI	CCGC	5 cut(s)	103, 361, 758, 808, 827
BspCNI	CTCAG	7 cut(s)	73, 555, 746, 832, 891, 934, 1101
BspHI	TCATGA	2 cut(s)	217, 247
BspLI	GGNNCC	2 cut(s)	415, 601
BspMAI	CTGCAG	2 cut(s)	864, 1005
BspMI	ACCTGC	1 cut(s)	813
BspPI	GGATC	3 cut(s)	197, 485, 925
BspT107I	GGYRCC	2 cut(s)	413, 599
BsrDI	GCAATG	3 cut(s)	247, 433, 1062
BsrFI	RCCGGY	1 cut(s)	1074
BsrI	ACTGG	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	1074
BssSI	CACGAG	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	2 cut(s)	107, 974
Bst4CI	ACNGT	2 cut(s)	285, 672
BstAPI	GCANNNNNTGC	3 cut(s)	428, 1000, 1048
BstBAI	YACGTR	2 cut(s)	311, 1082
BstC8I	GCNNGC	4 cut(s)	424, 825, 1044, 1053
BstDEI	CTNAG	7 cut(s)	60, 542, 733, 819, 878, 921, 1088
BstF5I	GGATG	1 cut(s)	838
BstHHI	GCGC	1 cut(s)	1042
BstMAI	GTCTC	3 cut(s)	274, 822, 1017
BstMWI	GCNNNNNNNGC	9 cut(s)	428, 644, 650, 766, 833, 1000, 1043, 1048, 1052
BstNI	CCWGG	2 cut(s)	107, 974
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	105, 972
BstSFI	CTRYAG	2 cut(s)	860, 1001
BstSLI	GKGCMC	1 cut(s)	1087
BstX2I	RGATCY	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	917
BsuI	GTATCC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	2 cut(s)	551, 998
BtsIMutI	CAGTG	3 cut(s)	505, 551, 998
BveI	ACCTGC	1 cut(s)	813
Cac8I	GCNNGC	4 cut(s)	424, 825, 1044, 1053
CciI	TCATGA	2 cut(s)	217, 247
CfoI	GCGC	1 cut(s)	1042
Cfr10I	RCCGGY	1 cut(s)	1074
Csp6I	GTAC	3 cut(s)	275, 438, 1066
CviAII	CATG	5 cut(s)	28, 218, 226, 248, 563
CviQI	GTAC	3 cut(s)	275, 438, 1066
DdeI	CTNAG	7 cut(s)	60, 542, 733, 819, 878, 921, 1088
DriI	GACNNNNNGTC	1 cut(s)	1107
Eam1105I	GACNNNNNGTC	1 cut(s)	1107
EciI	GGCGGA	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	105, 972
EcoT22I	ATGCAT	1 cut(s)	433
Esp3I	CGTCTC	2 cut(s)	274, 822
FaeI	CATG	5 cut(s)	31, 221, 229, 251, 566
FalI	AAGNNNNNCTT	4 cut(s)	587, 619, 1035, 1067
FaqI	GGGAC	1 cut(s)	1095
FatI	CATG	5 cut(s)	27, 217, 225, 247, 562
FauNDI	CATATG	2 cut(s)	447, 680
FbaI	TGATCA	4 cut(s)	139, 244, 778, 892
FokI	GGATG	1 cut(s)	845
FspBI	CTAG	4 cut(s)	371, 402, 441, 956
GlaI	GCGC	1 cut(s)	1041
GsuI	CTGGAG	2 cut(s)	39, 401
HapII	CCGG	1 cut(s)	1075
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	5 cut(s)	31, 221, 229, 251, 566
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	4 cut(s)	182, 221, 316, 1017
HpaII	CCGG	1 cut(s)	1075
HphI	GGTGA	3 cut(s)	149, 974, 1064
Hpy166II	GTNNAC	1 cut(s)	1118
Hpy188I	TCNGA	5 cut(s)	545, 629, 736, 917, 924
Hpy188III	TCNNGA	6 cut(s)	75, 218, 248, 299, 592, 1014
Hpy8I	GTNNAC	1 cut(s)	1118
HpyAV	CCTTC	4 cut(s)	243, 589, 628, 995
HpyCH4III	ACNGT	2 cut(s)	285, 672
HpyCH4IV	ACGT	2 cut(s)	310, 1081
HpyF10VI	GCNNNNNNNGC	9 cut(s)	428, 644, 650, 766, 833, 1000, 1043, 1048, 1052
HpyF3I	CTNAG	7 cut(s)	60, 542, 733, 819, 878, 921, 1088
HpySE526I	ACGT	2 cut(s)	310, 1081
Hsp92II	CATG	5 cut(s)	31, 221, 229, 251, 566
HspAI	GCGC	1 cut(s)	1040
Ksp22I	TGATCA	4 cut(s)	139, 244, 778, 892
LmnI	GCTCC	2 cut(s)	382, 461
LweI	GCATC	3 cut(s)	219, 631, 823
MaeI	CTAG	4 cut(s)	371, 402, 441, 956
MaeII	ACGT	2 cut(s)	310, 1081
MaeIII	GTNAC	3 cut(s)	30, 565, 800
MboII	GAAGA	1 cut(s)	527
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	1 cut(s)	1087
MluCI	AATT	2 cut(s)	168, 469
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	927
MnlI	CCTC	8 cut(s)	82, 128, 175, 713, 742, 823, 1031, 1097
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	3 cut(s)	158, 379, 890
MspI	CCGG	1 cut(s)	1075
MspR9I	CCNGG	2 cut(s)	107, 974
MvaI	CCWGG	2 cut(s)	107, 974
MwoI	GCNNNNNNNGC	9 cut(s)	428, 644, 650, 766, 833, 1000, 1043, 1048, 1052
NdeI	CATATG	2 cut(s)	447, 680
NlaIII	CATG	5 cut(s)	31, 221, 229, 251, 566
NlaIV	GGNNCC	2 cut(s)	415, 601
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	31
PagI	TCATGA	2 cut(s)	217, 247
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	182, 221, 1017
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Ppu21I	YACGTR	2 cut(s)	311, 1082
Psp6I	CCWGG	2 cut(s)	105, 972
PspGI	CCWGG	2 cut(s)	105, 972
PspN4I	GGNNCC	2 cut(s)	415, 601
PstI	CTGCAG	2 cut(s)	864, 1005
PsuI	RGATCY	1 cut(s)	917
PvuII	CAGCTG	3 cut(s)	158, 379, 890
RsaI	GTAC	3 cut(s)	276, 439, 1067
RsaNI	GTAC	3 cut(s)	275, 438, 1066
SaqAI	TTAA	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	1067
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	107, 974
SduI	GDGCHC	1 cut(s)	1087
SfaNI	GCATC	3 cut(s)	219, 631, 823
SfcI	CTRYAG	2 cut(s)	860, 1001
SmlI	CTYRAG	3 cut(s)	73, 130, 938
SmoI	CTYRAG	3 cut(s)	73, 130, 938
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	2 cut(s)	168, 469
SsiI	CCGC	5 cut(s)	103, 361, 758, 808, 827
SspMI	CTAG	4 cut(s)	371, 402, 441, 956
StyD4I	CCNGG	2 cut(s)	105, 972
TaaI	ACNGT	2 cut(s)	285, 672
TaiI	ACGT	2 cut(s)	313, 1084
TaqI	TCGA	3 cut(s)	192, 351, 1015
TasI	AATT	2 cut(s)	168, 469
TatI	WGTACW	1 cut(s)	1065
TauI	GCSGC	3 cut(s)	363, 760, 811
TfiI	GAWTC	3 cut(s)	182, 221, 1017
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	3 cut(s)	512, 558, 1005
TspDTI	ATGAA	4 cut(s)	234, 264, 647, 698
TspGWI	ACGGA	2 cut(s)	292, 584
TspRI	CASTG	3 cut(s)	512, 558, 1005
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	4 cut(s)	371, 402, 441, 956
ZrmI	AGTACT	1 cut(s)	1067
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.