Rh7AG489800
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
68998133 .. 69024023
25891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG489800.1

Sequence Viewer

Length: 1104 bp
ATGAACTATCCATCAACTCAATTTGCCACCTCAAGACAAATGGGGATATATGAGCCTTTCCGGCAAGTGGGTGTGTGGAGGGAAACTTTCAGTGGTGGTTACGGCTCAAATATAGGTGCTTCCACAATTGTAGAGGTGGATTCTGGGCTAGAAAACAAGATCGGATTTGGTTCTCATGAATCGATGGGACCTTCTGGAAATGATCAAGAATCAAACAGATCTGCTGATAAGGTACAGAGACGCTTAGAGCAAAATCGTGAAGCTGCTCGCAAAAGTCGTATGAGGAAAAAGGCTTATGTCCAACAACTAGAAACAAGCCGTTTAAAACTGGCGCAACTGGAGCTCGAACTGGACAAGACTAGAAAACAGGTAGCCTATGGAGGCAGTTCATTTGGTGGTAGTCATATGGGATACAATGGAATTGTGAATTCAGGGATCACTACATTTGAGTTGGAATATGGACACTGGGTAGAAGAGCAGCATAGACAGAATAATGAACTTCGAAAAGCATTGCAAGAACATGCAACTGAAATAGAGCTTCGATTACTTGTAGAAGGTGGTTTGAATCACTATGCTACTCTGTTCCGTATGAAGGCAGATGCTGCTAAGGCTGATATCTTTTATTTACTGTCTGGTATATGGAGAACTTCAGTAGAACGTTACTTTCACTGGATTGGAGGATTTCGCCCATCAGAGCTTCTAAATATTATCGAGCCCCAACTTGAGCCATTGACTGATCCACAACCTCTGGATTTCTATAACCTGCGGCAATCATCTCAGCAAGCTGAAGACGCTCTCTCACAGGGAATGGATAAACTACAGCAGACACTGGCCAAGACATTAGAAGCTGATCAAATATGGAGCGGAGAAACTTATGGATCTCAGATGGCTGCTGCATTTGAGAAATTTGAAGCACTGGAGAGCTTTGTTAGCCAGGCTGATCACCTTCGGCAGCAGACTCTGCAGCAAATGTCCCGAATCCTGACAACTCACCAAGCGGCTCGCGGCTTGCTTGCATTAGGAGAGTACTTTGAGCGTCTTCGTGCCCTCAGTTCTCTTTGGGCTGCTCGTCCACGTGAACCAACCGAGTCATATGCATTTTGA

Protein Analysis

367

Amino Acids

41.69

Weight (kDa)

6.05

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 75 - 115 5.6e-08 bZIP transcription factor
DOG1 PF14144 164 - 238 1.8e-28 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 771
AccBSI CCGCTC 1 cut(s) 864
AccII CGCG 1 cut(s) 1005
AciI CCGC 4 cut(s) 766, 864, 998, 1005
AclI AACGTT 1 cut(s) 658
AclWI GGATC 3 cut(s) 443, 731, 886
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 2 cut(s) 427, 905
AcuI CTGAAG 2 cut(s) 633, 807
AcvI CACGTG 1 cut(s) 1076
AfaI GTAC 2 cut(s) 234, 1028
AfiI CCNNNNNNNGG 2 cut(s) 67, 592
AgsI TTSAA 2 cut(s) 565, 911
AjnI CCWGG 1 cut(s) 933
AluBI AGCT 7 cut(s) 263, 343, 538, 697, 785, 848, 924
AluI AGCT 7 cut(s) 263, 343, 538, 697, 785, 848, 924
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 3 cut(s) 443, 731, 886
AlwNI CAGNNNCTG 3 cut(s) 602, 829, 961
AoxI GGCC 1 cut(s) 831
ApeKI GCWGC 8 cut(s) 263, 478, 602, 890, 893, 952, 964, 1064
ApoI RAATTY 2 cut(s) 427, 905
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 935, 983
AsuII TTCGAA 1 cut(s) 502
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 1048
BalI TGGCCA 1 cut(s) 833
BanII GRGCYC 2 cut(s) 345, 717
BbrPI CACGTG 1 cut(s) 1076
BbsI GAAGAC 2 cut(s) 795, 1031
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 8 cut(s) 250, 490, 589, 877, 880, 964, 976, 1051
BccI CCATC 4 cut(s) 19, 178, 697, 880
BceAI ACGGC 2 cut(s) 118, 303
BcgI CGANNNNNNTGC 1 cut(s) 1076
BciT130I CCWGG 1 cut(s) 935
BciVI GTATCC 1 cut(s) 404
BclI TGATCA 3 cut(s) 202, 850, 940
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 3 cut(s) 149, 308, 360
BfmI CTRYAG 2 cut(s) 818, 962
BfuAI ACCTGC 1 cut(s) 771
BfuI GTATCC 1 cut(s) 404
BglI GCCNNNNNGGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 1028
Bme1390I CCNGG 1 cut(s) 935
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 935
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 475
BpiI GAAGAC 2 cut(s) 795, 1031
BpmI CTGGAG 2 cut(s) 359, 938
Bpu10I CCTNAGC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 502
BpuEI CTTGAG 2 cut(s) 16, 743
Bsa29I ATCGAT 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 592
Bse1I ACTGG 7 cut(s) 333, 342, 354, 470, 674, 834, 921
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 935
BseCI ATCGAT 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 67, 592
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 791, 896, 1063
BseNI ACTGG 7 cut(s) 333, 342, 354, 470, 674, 834, 921
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 8 cut(s) 250, 490, 589, 877, 880, 964, 976, 1051
Bsh1236I CGCG 1 cut(s) 1005
BshFI GGCC 1 cut(s) 833
BshVI ATCGAT 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 2 cut(s) 201, 958
BslI CCNNNNNNNGG 2 cut(s) 67, 592
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 201, 958
BsnI GGCC 1 cut(s) 833
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 345, 717, 1048
Bsp143I GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
BspACI CCGC 4 cut(s) 766, 864, 998, 1005
BspANI GGCC 1 cut(s) 833
BspCNI CTCAG 3 cut(s) 790, 895, 1062
BspDI ATCGAT 1 cut(s) 182
BspFNI CGCG 1 cut(s) 1005
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 966
BspMI ACCTGC 1 cut(s) 771
BspPI GGATC 3 cut(s) 443, 731, 886
BspQI GCTCTTC 1 cut(s) 468
BspT104I TTCGAA 1 cut(s) 502
BsrBI CCGCTC 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 7 cut(s) 333, 342, 354, 470, 674, 834, 921
BssMI GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 1 cut(s) 630
Bst6I CTCTTC 1 cut(s) 468
BstAPI GCANNNNNTGC 2 cut(s) 602, 961
BstBAI YACGTR 1 cut(s) 1076
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 5 cut(s) 268, 783, 1003, 1010, 1014
BstDEI CTNAG 5 cut(s) 244, 606, 777, 882, 1049
BstFNI CGCG 1 cut(s) 1005
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 8 cut(s) 162, 205, 221, 438, 739, 853, 881, 943
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
BstMWI GCNNNNNNNGC 7 cut(s) 61, 340, 602, 608, 791, 930, 961
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 933
BstSFI CTRYAG 2 cut(s) 818, 962
BstSLI GKGCMC 1 cut(s) 1048
BstUI CGCG 1 cut(s) 1005
BstV1I GCAGC 8 cut(s) 250, 490, 589, 877, 880, 964, 976, 1051
BstV2I GAAGAC 2 cut(s) 795, 1031
BstX2I RGATCY 2 cut(s) 218, 878
BstYI RGATCY 2 cut(s) 218, 878
Bsu15I ATCGAT 1 cut(s) 182
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 833
BsuTUI ATCGAT 1 cut(s) 182
BtsIMutI CAGTG 5 cut(s) 97, 463, 667, 827, 914
BveI ACCTGC 1 cut(s) 771
Cac8I GCNNGC 5 cut(s) 268, 783, 1003, 1010, 1014
CaiI CAGNNNCTG 3 cut(s) 602, 829, 961
CciI TCATGA 1 cut(s) 175
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 182
CseI GACGC 3 cut(s) 249, 800, 1025
Csp6I GTAC 2 cut(s) 233, 1027
CviAII CATG 2 cut(s) 176, 521
CviQI GTAC 2 cut(s) 233, 1027
DdeI CTNAG 5 cut(s) 244, 606, 777, 882, 1049
DpnI GATC 8 cut(s) 161, 204, 220, 437, 738, 852, 880, 942
DpnII GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
DraI TTTAAA 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 2 cut(s) 345, 717
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 633, 807
Eco72I CACGTG 1 cut(s) 1076
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 933
EcoRV GATATC 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 1099
EcoT38I GRGCYC 2 cut(s) 345, 717
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 2 cut(s) 179, 524
FaqI GGGAC 2 cut(s) 201, 958
FatI CATG 2 cut(s) 175, 520
FauNDI CATATG 2 cut(s) 405, 1093
FbaI TGATCA 3 cut(s) 202, 850, 940
FriOI GRGCYC 2 cut(s) 345, 717
FspBI CTAG 3 cut(s) 149, 308, 360
GlaI GCGC 1 cut(s) 333
GsuI CTGGAG 2 cut(s) 359, 938
HaeIII GGCC 1 cut(s) 833
HapII CCGG 1 cut(s) 61
HgaI GACGC 3 cut(s) 249, 800, 1025
HhaI GCGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 179, 524
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 7 cut(s) 140, 179, 209, 565, 958, 978, 1088
HpaII CCGG 1 cut(s) 61
HphI GGTGA 2 cut(s) 935, 983
Hpy166II GTNNAC 2 cut(s) 1073, 1079
Hpy188I TCNGA 3 cut(s) 164, 694, 885
Hpy188III TCNNGA 8 cut(s) 33, 176, 195, 206, 257, 749, 975, 982
Hpy8I GTNNAC 2 cut(s) 1073, 1079
HpyAV CCTTC 4 cut(s) 201, 548, 586, 956
HpyCH4III ACNGT 1 cut(s) 630
HpyCH4IV ACGT 2 cut(s) 658, 1075
HpyCH4V TGCA 6 cut(s) 514, 524, 896, 964, 1016, 1097
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 340, 602, 608, 791, 930, 961
HpyF3I CTNAG 5 cut(s) 244, 606, 777, 882, 1049
HpySE526I ACGT 2 cut(s) 658, 1075
Hsp92II CATG 2 cut(s) 179, 524
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 3 cut(s) 202, 850, 940
Kzo9I GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 340, 861
Lsp1109I GCAGC 8 cut(s) 250, 490, 589, 877, 880, 964, 976, 1051
LweI GCATC 1 cut(s) 589
MaeI CTAG 3 cut(s) 149, 308, 360
MaeII ACGT 2 cut(s) 658, 1075
MaeIII GTNAC 2 cut(s) 98, 659
MalI GATC 8 cut(s) 161, 204, 220, 437, 738, 852, 880, 942
MbiI CCGCTC 1 cut(s) 864
MboI GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
MboII GAAGA 3 cut(s) 485, 800, 1031
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 218, 878
MhlI GDGCHC 3 cut(s) 345, 717, 1048
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 5 cut(s) 20, 126, 420, 427, 905
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 2 cut(s) 952, 1097
MmeI TCCRAC 2 cut(s) 325, 432
MnlI CCTC 8 cut(s) 40, 72, 127, 276, 374, 671, 756, 1058
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 1 cut(s) 1099
MscI TGGCCA 1 cut(s) 833
MseI TTAA 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 833
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 935
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 935
MvnI CGCG 1 cut(s) 1005
MwoI GCNNNNNNNGC 7 cut(s) 61, 340, 602, 608, 791, 930, 961
NdeI CATATG 2 cut(s) 405, 1093
NdeII GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
NlaIII CATG 2 cut(s) 179, 524
NlaIV GGNNCC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 1099
NspI RCATGY 1 cut(s) 524
NspV TTCGAA 1 cut(s) 502
PagI TCATGA 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 5 cut(s) 140, 179, 209, 565, 978
PleI GAGTC 2 cut(s) 952, 1096
PmaCI CACGTG 1 cut(s) 1076
PmlI CACGTG 1 cut(s) 1076
PpsI GAGTC 2 cut(s) 952, 1096
Ppu21I YACGTR 1 cut(s) 1076
PpuMI RGGWCCY 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 933
PspCI CACGTG 1 cut(s) 1076
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 966
PstNI CAGNNNCTG 3 cut(s) 602, 829, 961
PsuI RGATCY 2 cut(s) 218, 878
RsaI GTAC 2 cut(s) 234, 1028
RsaNI GTAC 2 cut(s) 233, 1027
SacI GAGCTC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 8 cut(s) 159, 202, 218, 435, 736, 850, 878, 940
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 1028
SchI GAGTC 2 cut(s) 952, 1097
ScrFI CCNGG 1 cut(s) 935
SduI GDGCHC 3 cut(s) 345, 717, 1048
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 818, 962
SfuI TTCGAA 1 cut(s) 502
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 31, 722
SmoI CTYRAG 2 cut(s) 31, 722
Sse9I AATT 5 cut(s) 20, 126, 420, 427, 905
SsiI CCGC 4 cut(s) 766, 864, 998, 1005
SspI AATATT 1 cut(s) 706
SspMI CTAG 3 cut(s) 149, 308, 360
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 933
TaaI ACNGT 1 cut(s) 630
TaiI ACGT 2 cut(s) 661, 1078
TaqI TCGA 5 cut(s) 182, 345, 502, 541, 711
TasI AATT 5 cut(s) 20, 126, 420, 427, 905
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 3 cut(s) 769, 1001, 1008
TfiI GAWTC 5 cut(s) 140, 179, 209, 565, 978
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 5 cut(s) 97, 470, 674, 834, 921
TseI GCWGC 8 cut(s) 263, 478, 602, 890, 893, 952, 964, 1064
TspDTI ATGAA 5 cut(s) 17, 192, 378, 510, 605
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 5 cut(s) 97, 470, 674, 834, 921
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 427, 905
XceI RCATGY 1 cut(s) 524
XspI CTAG 3 cut(s) 149, 308, 360
ZrmI AGTACT 1 cut(s) 1028
Zsp2I ATGCAT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.