transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77920 |
| fragaria_vesca | FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 |
| malus_domestica | MD08G1174200.v1.1 |
| prunus_persica | Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 |
| pyrus_communis | pycom08g14930 |
| rosa_chinensis | RchiOBHm_Chr7g0240401 |
| rosa_laevigata | RLG00000000680 |
| rosa_multiflora | Rmu_sc0002676.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00220150 |
| rosa_rugosa | Rorug07G0335500 Rorug07G0335600 Rorug07G0335700 |
| rosa_samantha | Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800 |
| rosa_wichuraiana | Rw7G040980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 771 |
| AccBSI | CCGCTC | 1 cut(s) | 864 |
| AccII | CGCG | 1 cut(s) | 1005 |
| AciI | CCGC | 4 cut(s) | 766, 864, 998, 1005 |
| AclI | AACGTT | 1 cut(s) | 658 |
| AclWI | GGATC | 3 cut(s) | 443, 731, 886 |
| AcoI | YGGCCR | 1 cut(s) | 831 |
| AcsI | RAATTY | 2 cut(s) | 427, 905 |
| AcuI | CTGAAG | 2 cut(s) | 633, 807 |
| AcvI | CACGTG | 1 cut(s) | 1076 |
| AfaI | GTAC | 2 cut(s) | 234, 1028 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 67, 592 |
| AgsI | TTSAA | 2 cut(s) | 565, 911 |
| AjnI | CCWGG | 1 cut(s) | 933 |
| AluBI | AGCT | 7 cut(s) | 263, 343, 538, 697, 785, 848, 924 |
| AluI | AGCT | 7 cut(s) | 263, 343, 538, 697, 785, 848, 924 |
| Alw21I | GWGCWC | 1 cut(s) | 345 |
| Alw26I | GTCTC | 1 cut(s) | 232 |
| AlwI | GGATC | 3 cut(s) | 443, 731, 886 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 602, 829, 961 |
| AoxI | GGCC | 1 cut(s) | 831 |
| ApeKI | GCWGC | 8 cut(s) | 263, 478, 602, 890, 893, 952, 964, 1064 |
| ApoI | RAATTY | 2 cut(s) | 427, 905 |
| AspLEI | GCGC | 1 cut(s) | 334 |
| AspS9I | GGNCC | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 2 cut(s) | 935, 983 |
| AsuII | TTCGAA | 1 cut(s) | 502 |
| AvaII | GGWCC | 1 cut(s) | 188 |
| BaeGI | GKGCMC | 1 cut(s) | 1048 |
| BalI | TGGCCA | 1 cut(s) | 833 |
| BanII | GRGCYC | 2 cut(s) | 345, 717 |
| BbrPI | CACGTG | 1 cut(s) | 1076 |
| BbsI | GAAGAC | 2 cut(s) | 795, 1031 |
| Bbv12I | GWGCWC | 1 cut(s) | 345 |
| BbvI | GCAGC | 8 cut(s) | 250, 490, 589, 877, 880, 964, 976, 1051 |
| BccI | CCATC | 4 cut(s) | 19, 178, 697, 880 |
| BceAI | ACGGC | 2 cut(s) | 118, 303 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1076 |
| BciT130I | CCWGG | 1 cut(s) | 935 |
| BciVI | GTATCC | 1 cut(s) | 404 |
| BclI | TGATCA | 3 cut(s) | 202, 850, 940 |
| BcoDI | GTCTC | 1 cut(s) | 232 |
| BfaI | CTAG | 3 cut(s) | 149, 308, 360 |
| BfmI | CTRYAG | 2 cut(s) | 818, 962 |
| BfuAI | ACCTGC | 1 cut(s) | 771 |
| BfuI | GTATCC | 1 cut(s) | 404 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 61 |
| BglII | AGATCT | 1 cut(s) | 218 |
| BmcAI | AGTACT | 1 cut(s) | 1028 |
| Bme1390I | CCNGG | 1 cut(s) | 935 |
| Bme18I | GGWCC | 1 cut(s) | 188 |
| BmgT120I | GGNCC | 1 cut(s) | 188 |
| BmiI | GGNNCC | 1 cut(s) | 189 |
| BmrFI | CCNGG | 1 cut(s) | 935 |
| BmrI | ACTGGG | 1 cut(s) | 475 |
| BmsI | GCATC | 1 cut(s) | 589 |
| BmuI | ACTGGG | 1 cut(s) | 475 |
| BpiI | GAAGAC | 2 cut(s) | 795, 1031 |
| BpmI | CTGGAG | 2 cut(s) | 359, 938 |
| Bpu10I | CCTNAGC | 1 cut(s) | 606 |
| Bpu14I | TTCGAA | 1 cut(s) | 502 |
| BpuEI | CTTGAG | 2 cut(s) | 16, 743 |
| Bsa29I | ATCGAT | 1 cut(s) | 182 |
| BsaAI | YACGTR | 1 cut(s) | 1076 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 67, 592 |
| Bse1I | ACTGG | 7 cut(s) | 333, 342, 354, 470, 674, 834, 921 |
| Bse3DI | GCAATG | 1 cut(s) | 509 |
| BseBI | CCWGG | 1 cut(s) | 935 |
| BseCI | ATCGAT | 1 cut(s) | 182 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 67, 592 |
| BseMI | GCAATG | 1 cut(s) | 509 |
| BseMII | CTCAG | 3 cut(s) | 791, 896, 1063 |
| BseNI | ACTGG | 7 cut(s) | 333, 342, 354, 470, 674, 834, 921 |
| BseSI | GKGCMC | 1 cut(s) | 1048 |
| BseXI | GCAGC | 8 cut(s) | 250, 490, 589, 877, 880, 964, 976, 1051 |
| Bsh1236I | CGCG | 1 cut(s) | 1005 |
| BshFI | GGCC | 1 cut(s) | 833 |
| BshVI | ATCGAT | 1 cut(s) | 182 |
| BsiHKAI | GWGCWC | 1 cut(s) | 345 |
| BsiSI | CCGG | 1 cut(s) | 61 |
| BslFI | GGGAC | 2 cut(s) | 201, 958 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 67, 592 |
| BsmAI | GTCTC | 1 cut(s) | 232 |
| BsmBI | CGTCTC | 1 cut(s) | 232 |
| BsmFI | GGGAC | 2 cut(s) | 201, 958 |
| BsnI | GGCC | 1 cut(s) | 833 |
| Bsp119I | TTCGAA | 1 cut(s) | 502 |
| Bsp1286I | GDGCHC | 3 cut(s) | 345, 717, 1048 |
| Bsp143I | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| BspACI | CCGC | 4 cut(s) | 766, 864, 998, 1005 |
| BspANI | GGCC | 1 cut(s) | 833 |
| BspCNI | CTCAG | 3 cut(s) | 790, 895, 1062 |
| BspDI | ATCGAT | 1 cut(s) | 182 |
| BspFNI | CGCG | 1 cut(s) | 1005 |
| BspHI | TCATGA | 1 cut(s) | 175 |
| BspLI | GGNNCC | 1 cut(s) | 189 |
| BspMAI | CTGCAG | 1 cut(s) | 966 |
| BspMI | ACCTGC | 1 cut(s) | 771 |
| BspPI | GGATC | 3 cut(s) | 443, 731, 886 |
| BspQI | GCTCTTC | 1 cut(s) | 468 |
| BspT104I | TTCGAA | 1 cut(s) | 502 |
| BsrBI | CCGCTC | 1 cut(s) | 864 |
| BsrDI | GCAATG | 1 cut(s) | 509 |
| BsrI | ACTGG | 7 cut(s) | 333, 342, 354, 470, 674, 834, 921 |
| BssMI | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| Bst2UI | CCWGG | 1 cut(s) | 935 |
| Bst4CI | ACNGT | 1 cut(s) | 630 |
| Bst6I | CTCTTC | 1 cut(s) | 468 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 602, 961 |
| BstBAI | YACGTR | 1 cut(s) | 1076 |
| BstBI | TTCGAA | 1 cut(s) | 502 |
| BstC8I | GCNNGC | 5 cut(s) | 268, 783, 1003, 1010, 1014 |
| BstDEI | CTNAG | 5 cut(s) | 244, 606, 777, 882, 1049 |
| BstFNI | CGCG | 1 cut(s) | 1005 |
| BstHHI | GCGC | 1 cut(s) | 334 |
| BstKTI | GATC | 8 cut(s) | 162, 205, 221, 438, 739, 853, 881, 943 |
| BstMAI | GTCTC | 1 cut(s) | 232 |
| BstMBI | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 61, 340, 602, 608, 791, 930, 961 |
| BstNI | CCWGG | 1 cut(s) | 935 |
| BstNSI | RCATGY | 1 cut(s) | 524 |
| BstSCI | CCNGG | 1 cut(s) | 933 |
| BstSFI | CTRYAG | 2 cut(s) | 818, 962 |
| BstSLI | GKGCMC | 1 cut(s) | 1048 |
| BstUI | CGCG | 1 cut(s) | 1005 |
| BstV1I | GCAGC | 8 cut(s) | 250, 490, 589, 877, 880, 964, 976, 1051 |
| BstV2I | GAAGAC | 2 cut(s) | 795, 1031 |
| BstX2I | RGATCY | 2 cut(s) | 218, 878 |
| BstYI | RGATCY | 2 cut(s) | 218, 878 |
| Bsu15I | ATCGAT | 1 cut(s) | 182 |
| BsuI | GTATCC | 1 cut(s) | 404 |
| BsuRI | GGCC | 1 cut(s) | 833 |
| BsuTUI | ATCGAT | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 5 cut(s) | 97, 463, 667, 827, 914 |
| BveI | ACCTGC | 1 cut(s) | 771 |
| Cac8I | GCNNGC | 5 cut(s) | 268, 783, 1003, 1010, 1014 |
| CaiI | CAGNNNCTG | 3 cut(s) | 602, 829, 961 |
| CciI | TCATGA | 1 cut(s) | 175 |
| CfoI | GCGC | 1 cut(s) | 334 |
| Cfr13I | GGNCC | 1 cut(s) | 188 |
| ClaI | ATCGAT | 1 cut(s) | 182 |
| CseI | GACGC | 3 cut(s) | 249, 800, 1025 |
| Csp6I | GTAC | 2 cut(s) | 233, 1027 |
| CviAII | CATG | 2 cut(s) | 176, 521 |
| CviQI | GTAC | 2 cut(s) | 233, 1027 |
| DdeI | CTNAG | 5 cut(s) | 244, 606, 777, 882, 1049 |
| DpnI | GATC | 8 cut(s) | 161, 204, 220, 437, 738, 852, 880, 942 |
| DpnII | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| DraI | TTTAAA | 1 cut(s) | 324 |
| EaeI | YGGCCR | 1 cut(s) | 831 |
| Eam1104I | CTCTTC | 1 cut(s) | 468 |
| EarI | CTCTTC | 1 cut(s) | 468 |
| Ecl136II | GAGCTC | 1 cut(s) | 343 |
| Eco24I | GRGCYC | 2 cut(s) | 345, 717 |
| Eco32I | GATATC | 1 cut(s) | 616 |
| Eco47I | GGWCC | 1 cut(s) | 188 |
| Eco53kI | GAGCTC | 1 cut(s) | 343 |
| Eco57I | CTGAAG | 2 cut(s) | 633, 807 |
| Eco72I | CACGTG | 1 cut(s) | 1076 |
| EcoICRI | GAGCTC | 1 cut(s) | 343 |
| EcoO109I | RGGNCCY | 1 cut(s) | 188 |
| EcoRI | GAATTC | 1 cut(s) | 427 |
| EcoRII | CCWGG | 1 cut(s) | 933 |
| EcoRV | GATATC | 1 cut(s) | 616 |
| EcoT22I | ATGCAT | 1 cut(s) | 1099 |
| EcoT38I | GRGCYC | 2 cut(s) | 345, 717 |
| Esp3I | CGTCTC | 1 cut(s) | 232 |
| FaeI | CATG | 2 cut(s) | 179, 524 |
| FaqI | GGGAC | 2 cut(s) | 201, 958 |
| FatI | CATG | 2 cut(s) | 175, 520 |
| FauNDI | CATATG | 2 cut(s) | 405, 1093 |
| FbaI | TGATCA | 3 cut(s) | 202, 850, 940 |
| FriOI | GRGCYC | 2 cut(s) | 345, 717 |
| FspBI | CTAG | 3 cut(s) | 149, 308, 360 |
| GlaI | GCGC | 1 cut(s) | 333 |
| GsuI | CTGGAG | 2 cut(s) | 359, 938 |
| HaeIII | GGCC | 1 cut(s) | 833 |
| HapII | CCGG | 1 cut(s) | 61 |
| HgaI | GACGC | 3 cut(s) | 249, 800, 1025 |
| HhaI | GCGC | 1 cut(s) | 334 |
| Hin1II | CATG | 2 cut(s) | 179, 524 |
| Hin6I | GCGC | 1 cut(s) | 332 |
| HinP1I | GCGC | 1 cut(s) | 332 |
| HinfI | GANTC | 7 cut(s) | 140, 179, 209, 565, 958, 978, 1088 |
| HpaII | CCGG | 1 cut(s) | 61 |
| HphI | GGTGA | 2 cut(s) | 935, 983 |
| Hpy166II | GTNNAC | 2 cut(s) | 1073, 1079 |
| Hpy188I | TCNGA | 3 cut(s) | 164, 694, 885 |
| Hpy188III | TCNNGA | 8 cut(s) | 33, 176, 195, 206, 257, 749, 975, 982 |
| Hpy8I | GTNNAC | 2 cut(s) | 1073, 1079 |
| HpyAV | CCTTC | 4 cut(s) | 201, 548, 586, 956 |
| HpyCH4III | ACNGT | 1 cut(s) | 630 |
| HpyCH4IV | ACGT | 2 cut(s) | 658, 1075 |
| HpyCH4V | TGCA | 6 cut(s) | 514, 524, 896, 964, 1016, 1097 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 61, 340, 602, 608, 791, 930, 961 |
| HpyF3I | CTNAG | 5 cut(s) | 244, 606, 777, 882, 1049 |
| HpySE526I | ACGT | 2 cut(s) | 658, 1075 |
| Hsp92II | CATG | 2 cut(s) | 179, 524 |
| HspAI | GCGC | 1 cut(s) | 332 |
| Ksp22I | TGATCA | 3 cut(s) | 202, 850, 940 |
| Kzo9I | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| LguI | GCTCTTC | 1 cut(s) | 468 |
| LmnI | GCTCC | 2 cut(s) | 340, 861 |
| Lsp1109I | GCAGC | 8 cut(s) | 250, 490, 589, 877, 880, 964, 976, 1051 |
| LweI | GCATC | 1 cut(s) | 589 |
| MaeI | CTAG | 3 cut(s) | 149, 308, 360 |
| MaeII | ACGT | 2 cut(s) | 658, 1075 |
| MaeIII | GTNAC | 2 cut(s) | 98, 659 |
| MalI | GATC | 8 cut(s) | 161, 204, 220, 437, 738, 852, 880, 942 |
| MbiI | CCGCTC | 1 cut(s) | 864 |
| MboI | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| MboII | GAAGA | 3 cut(s) | 485, 800, 1031 |
| MfeI | CAATTG | 1 cut(s) | 126 |
| MflI | RGATCY | 2 cut(s) | 218, 878 |
| MhlI | GDGCHC | 3 cut(s) | 345, 717, 1048 |
| MlsI | TGGCCA | 1 cut(s) | 833 |
| MluCI | AATT | 5 cut(s) | 20, 126, 420, 427, 905 |
| MluNI | TGGCCA | 1 cut(s) | 833 |
| MlyI | GAGTC | 2 cut(s) | 952, 1097 |
| MmeI | TCCRAC | 2 cut(s) | 325, 432 |
| MnlI | CCTC | 8 cut(s) | 40, 72, 127, 276, 374, 671, 756, 1058 |
| Mox20I | TGGCCA | 1 cut(s) | 833 |
| Mph1103I | ATGCAT | 1 cut(s) | 1099 |
| MscI | TGGCCA | 1 cut(s) | 833 |
| MseI | TTAA | 1 cut(s) | 323 |
| Msp20I | TGGCCA | 1 cut(s) | 833 |
| MspI | CCGG | 1 cut(s) | 61 |
| MspR9I | CCNGG | 1 cut(s) | 935 |
| MunI | CAATTG | 1 cut(s) | 126 |
| MvaI | CCWGG | 1 cut(s) | 935 |
| MvnI | CGCG | 1 cut(s) | 1005 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 61, 340, 602, 608, 791, 930, 961 |
| NdeI | CATATG | 2 cut(s) | 405, 1093 |
| NdeII | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| NlaIII | CATG | 2 cut(s) | 179, 524 |
| NlaIV | GGNNCC | 1 cut(s) | 189 |
| NsiI | ATGCAT | 1 cut(s) | 1099 |
| NspI | RCATGY | 1 cut(s) | 524 |
| NspV | TTCGAA | 1 cut(s) | 502 |
| PagI | TCATGA | 1 cut(s) | 175 |
| PciSI | GCTCTTC | 1 cut(s) | 468 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 274 |
| PfeI | GAWTC | 5 cut(s) | 140, 179, 209, 565, 978 |
| PleI | GAGTC | 2 cut(s) | 952, 1096 |
| PmaCI | CACGTG | 1 cut(s) | 1076 |
| PmlI | CACGTG | 1 cut(s) | 1076 |
| PpsI | GAGTC | 2 cut(s) | 952, 1096 |
| Ppu21I | YACGTR | 1 cut(s) | 1076 |
| PpuMI | RGGWCCY | 1 cut(s) | 188 |
| Psp124BI | GAGCTC | 1 cut(s) | 345 |
| Psp1406I | AACGTT | 1 cut(s) | 658 |
| Psp5II | RGGWCCY | 1 cut(s) | 188 |
| Psp6I | CCWGG | 1 cut(s) | 933 |
| PspCI | CACGTG | 1 cut(s) | 1076 |
| PspGI | CCWGG | 1 cut(s) | 933 |
| PspN4I | GGNNCC | 1 cut(s) | 189 |
| PspPI | GGNCC | 1 cut(s) | 188 |
| PspPPI | RGGWCCY | 1 cut(s) | 188 |
| PstI | CTGCAG | 1 cut(s) | 966 |
| PstNI | CAGNNNCTG | 3 cut(s) | 602, 829, 961 |
| PsuI | RGATCY | 2 cut(s) | 218, 878 |
| RsaI | GTAC | 2 cut(s) | 234, 1028 |
| RsaNI | GTAC | 2 cut(s) | 233, 1027 |
| SacI | GAGCTC | 1 cut(s) | 345 |
| SapI | GCTCTTC | 1 cut(s) | 468 |
| SaqAI | TTAA | 1 cut(s) | 323 |
| Sau3AI | GATC | 8 cut(s) | 159, 202, 218, 435, 736, 850, 878, 940 |
| Sau96I | GGNCC | 1 cut(s) | 188 |
| ScaI | AGTACT | 1 cut(s) | 1028 |
| SchI | GAGTC | 2 cut(s) | 952, 1097 |
| ScrFI | CCNGG | 1 cut(s) | 935 |
| SduI | GDGCHC | 3 cut(s) | 345, 717, 1048 |
| SfaNI | GCATC | 1 cut(s) | 589 |
| SfcI | CTRYAG | 2 cut(s) | 818, 962 |
| SfuI | TTCGAA | 1 cut(s) | 502 |
| SinI | GGWCC | 1 cut(s) | 188 |
| SmlI | CTYRAG | 2 cut(s) | 31, 722 |
| SmoI | CTYRAG | 2 cut(s) | 31, 722 |
| Sse9I | AATT | 5 cut(s) | 20, 126, 420, 427, 905 |
| SsiI | CCGC | 4 cut(s) | 766, 864, 998, 1005 |
| SspI | AATATT | 1 cut(s) | 706 |
| SspMI | CTAG | 3 cut(s) | 149, 308, 360 |
| SstI | GAGCTC | 1 cut(s) | 345 |
| StyD4I | CCNGG | 1 cut(s) | 933 |
| TaaI | ACNGT | 1 cut(s) | 630 |
| TaiI | ACGT | 2 cut(s) | 661, 1078 |
| TaqI | TCGA | 5 cut(s) | 182, 345, 502, 541, 711 |
| TasI | AATT | 5 cut(s) | 20, 126, 420, 427, 905 |
| TatI | WGTACW | 1 cut(s) | 1026 |
| TauI | GCSGC | 3 cut(s) | 769, 1001, 1008 |
| TfiI | GAWTC | 5 cut(s) | 140, 179, 209, 565, 978 |
| Tru1I | TTAA | 1 cut(s) | 323 |
| Tru9I | TTAA | 1 cut(s) | 323 |
| TscAI | CASTG | 5 cut(s) | 97, 470, 674, 834, 921 |
| TseI | GCWGC | 8 cut(s) | 263, 478, 602, 890, 893, 952, 964, 1064 |
| TspDTI | ATGAA | 5 cut(s) | 17, 192, 378, 510, 605 |
| TspGWI | ACGGA | 1 cut(s) | 575 |
| TspRI | CASTG | 5 cut(s) | 97, 470, 674, 834, 921 |
| VpaK11BI | GGWCC | 1 cut(s) | 188 |
| XapI | RAATTY | 2 cut(s) | 427, 905 |
| XceI | RCATGY | 1 cut(s) | 524 |
| XspI | CTAG | 3 cut(s) | 149, 308, 360 |
| ZrmI | AGTACT | 1 cut(s) | 1028 |
| Zsp2I | ATGCAT | 1 cut(s) | 1099 |