Rorug07G0335600
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
36794090 .. 36795455
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0335600.1

Sequence Viewer

Length: 921 bp
ATGGGGACTCCTTACCCAAACCCCATCTCTCCTGCCCAAACCCGCATAGGCTGGATTGGCATCGGCGTCATGGGTGCCGCCATGGCCTCCCGCCTTATCTCAGCCGGCTACTCCCTCACCGTCTACGCTCGCACTCCTTCCAAAGCCGCTCCCCTACAATCCCAGGGGGCCCACCTCGCCGACTCCCCGTTTCAACTAGCCCAACGCGCCGACGTCGTCTTCACCATGGTGGGCCACCCGTCCGATGTCCGATCAAATGTCCTCGGCCCAAACGCCCTTCTTTCCGGCCTCAATCCCAACTGCGTCACCGTCGACATGACCAGCAGCCATCCCGCCCTCGCGCGTGAGATTTTCGCCGCCGCACGCGCCAAGGACTGCTGGTCCGTCGACGCGCCGGTGTCCGGCGGTGACATTGGCGCCAGGGAAGGCAAGCTTGCTATACTCGCCGGTGGGGATGCTTCGGTGGTGAAGTGGTTGGCGCCATTGTTTGAGATTATGGGGAAGGTTACTTATATGGGTCCAGCAGGGTGCGGCCAGAGTTGTAAAATTGGTAACCAGATCATTGTGGGGGCGAATTTGCTTGGATTGAGTGAAGGGTTGGTGTTTGCGGAGCGGGCCGGGTTGGATGTGAGGCGATTTATGGAGGCGGTGAGGGGCGGCGCGGCGGGTTCTAAAGTAATGGAGTTGTTTGGGGAGAGGATGATTGAGAGGGACTTCAGGCCTGGTGGTTTTGCTGAGTACATGGTGAAGGATATGGGGATGGGTGTGGATGTTGTGGAGGAAGGTGAGGATGGGAAGGTAGTAGTGTTGCCGGGTGCTGCATTGTGCAAGCAGTTGTTTTCGGGTATGGTGGCTAATGGGGACGGGAAGCTTGGTACGCAAGGTCTTATCACTGCTATAGAGAGGCTCAATGGAAAGTGA

Protein Analysis

306

Amino Acids

31.83

Weight (kDa)

6.83

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_2 PF03446 15 - 173 9.4e-47 NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored PF03807 15 - 77 3.5e-08 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_11 PF14833 176 - 298 1.1e-25 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 3 cut(s) 74, 416, 478
AccBSI CCGCTC 2 cut(s) 149, 613
AccI GTMKAC 3 cut(s) 123, 312, 387
AccII CGCG 6 cut(s) 207, 341, 343, 366, 392, 662
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 700
AcyI GRCGYC 4 cut(s) 66, 213, 417, 479
AfaI GTAC 2 cut(s) 740, 877
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 194
AhdI GACNNNNNGTC 1 cut(s) 379
AjnI CCWGG 3 cut(s) 162, 419, 721
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 2 cut(s) 433, 871
AluI AGCT 2 cut(s) 433, 871
AoxI GGCC 8 cut(s) 84, 168, 232, 265, 286, 532, 615, 719
ApaI GGGCCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 324, 818
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 7 cut(s) 209, 343, 368, 394, 419, 481, 662
AspS9I GGNCC 7 cut(s) 168, 169, 232, 266, 381, 518, 615
AsuC2I CCSGG 2 cut(s) 619, 813
AsuHPI GGTGA 8 cut(s) 109, 214, 298, 419, 478, 661, 757, 797
AvaII GGWCC 2 cut(s) 381, 518
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 3 cut(s) 74, 416, 478
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 336, 805
BccI CCATC 4 cut(s) 32, 336, 754, 785
BciT130I CCWGG 3 cut(s) 164, 421, 723
BcnI CCSGG 2 cut(s) 619, 813
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 2 cut(s) 420, 482
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 9 cut(s) 78, 147, 325, 357, 360, 532, 658, 663, 819
BlsI GCNGC 9 cut(s) 79, 148, 326, 358, 361, 533, 659, 664, 820
Bme1390I CCNGG 5 cut(s) 164, 421, 619, 723, 813
Bme18I GGWCC 2 cut(s) 381, 518
BmeRI GACNNNNNGTC 1 cut(s) 379
BmgT120I GGNCC 7 cut(s) 168, 169, 232, 266, 381, 518, 615
BmiI GGNNCC 6 cut(s) 76, 169, 170, 418, 480, 519
BmrFI CCNGG 5 cut(s) 164, 421, 619, 723, 813
BmsI GCATC 2 cut(s) 69, 445
BpiI GAAGAC 1 cut(s) 211
BpuMI CCSGG 2 cut(s) 619, 813
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 4 cut(s) 66, 213, 417, 479
BsaJI CCNNGG 7 cut(s) 81, 162, 163, 225, 262, 369, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 3 cut(s) 104, 394, 446
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 3 cut(s) 164, 421, 723
BseDI CCNNGG 7 cut(s) 81, 162, 163, 225, 262, 369, 420
BseGI GGATG 7 cut(s) 328, 460, 631, 705, 765, 775, 796
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 114, 726
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 2 cut(s) 336, 805
Bsh1236I CGCG 6 cut(s) 207, 341, 343, 366, 392, 662
BshFI GGCC 8 cut(s) 86, 170, 234, 267, 288, 534, 617, 721
BshNI GGYRCC 3 cut(s) 74, 416, 478
BsiSI CCGG 7 cut(s) 105, 285, 395, 402, 447, 618, 812
BslFI GGGAC 3 cut(s) 19, 725, 875
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 3 cut(s) 19, 725, 875
BsnI GGCC 8 cut(s) 86, 170, 234, 267, 288, 534, 617, 721
Bsp120I GGGCCC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 251, 558
Bsp19I CCATGG 2 cut(s) 81, 225
BspANI GGCC 8 cut(s) 86, 170, 234, 267, 288, 534, 617, 721
BspCNI CTCAG 2 cut(s) 113, 727
BspFNI CGCG 6 cut(s) 207, 341, 343, 366, 392, 662
BspLI GGNNCC 6 cut(s) 76, 169, 170, 418, 480, 519
BspT107I GGYRCC 3 cut(s) 74, 416, 478
BsrBI CCGCTC 2 cut(s) 149, 613
BsrFI RCCGGY 3 cut(s) 104, 394, 446
BssAI RCCGGY 3 cut(s) 104, 394, 446
BssECI CCNNGG 7 cut(s) 81, 162, 163, 225, 262, 369, 420
BssMI GATC 2 cut(s) 251, 558
BssNI GRCGYC 4 cut(s) 66, 213, 417, 479
BssT1I CCWWGG 3 cut(s) 81, 225, 369
Bst2UI CCWGG 3 cut(s) 164, 421, 723
Bst4CI ACNGT 2 cut(s) 121, 310
BstACI GRCGYC 4 cut(s) 66, 213, 417, 479
BstC8I GCNNGC 7 cut(s) 106, 130, 364, 431, 435, 615, 830
BstDEI CTNAG 2 cut(s) 100, 735
BstDSI CCRYGG 2 cut(s) 81, 225
BstEII GGTNACC 1 cut(s) 551
BstF5I GGATG 7 cut(s) 328, 460, 631, 705, 765, 775, 796
BstFNI CGCG 6 cut(s) 207, 341, 343, 366, 392, 662
BstH2I RGCGCY 2 cut(s) 420, 482
BstHHI GCGC 7 cut(s) 209, 343, 368, 394, 419, 481, 662
BstKTI GATC 2 cut(s) 254, 561
BstMBI GATC 2 cut(s) 251, 558
BstMWI GCNNNNNNNGC 8 cut(s) 57, 83, 176, 206, 365, 443, 614, 877
BstNI CCWGG 3 cut(s) 164, 421, 723
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 5 cut(s) 162, 419, 617, 721, 811
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 6 cut(s) 207, 341, 343, 366, 392, 662
BstV1I GCAGC 2 cut(s) 336, 805
BstV2I GAAGAC 1 cut(s) 211
BsuRI GGCC 8 cut(s) 86, 170, 234, 267, 288, 534, 617, 721
BtgI CCRYGG 2 cut(s) 81, 225
BtsCI GGATG 7 cut(s) 328, 460, 631, 705, 765, 775, 796
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 1 cut(s) 891
Cac8I GCNNGC 7 cut(s) 106, 130, 364, 431, 435, 615, 830
CfoI GCGC 7 cut(s) 209, 343, 368, 394, 419, 481, 662
Cfr10I RCCGGY 3 cut(s) 104, 394, 446
Cfr13I GGNCC 7 cut(s) 168, 169, 232, 266, 381, 518, 615
CseI GACGC 3 cut(s) 55, 292, 398
Csp6I GTAC 2 cut(s) 739, 876
CviAII CATG 5 cut(s) 70, 82, 226, 316, 742
CviQI GTAC 2 cut(s) 739, 876
DdeI CTNAG 2 cut(s) 100, 735
DinI GGCGCC 2 cut(s) 418, 480
DpnI GATC 2 cut(s) 253, 560
DpnII GATC 2 cut(s) 251, 558
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 532
Eam1105I GACNNNNNGTC 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 81, 225, 369
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 381, 518
Eco57I CTGAAG 1 cut(s) 700
Eco91I GGTNACC 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 551
EcoRII CCWGG 3 cut(s) 162, 419, 721
EcoT14I CCWWGG 3 cut(s) 81, 225, 369
EcoT38I GRGCYC 1 cut(s) 172
EgeI GGCGCC 2 cut(s) 418, 480
EheI GGCGCC 2 cut(s) 418, 480
ErhI CCWWGG 3 cut(s) 81, 225, 369
FaeI CATG 5 cut(s) 73, 85, 229, 319, 745
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 3 cut(s) 19, 725, 875
FatI CATG 5 cut(s) 69, 81, 225, 315, 741
FauI CCCGC 5 cut(s) 50, 98, 340, 606, 658
FblI GTMKAC 3 cut(s) 123, 312, 387
Fnu4HI GCNGC 9 cut(s) 78, 147, 325, 357, 360, 532, 658, 663, 819
FokI GGATG 7 cut(s) 315, 467, 638, 712, 772, 782, 803
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 9 cut(s) 78, 147, 325, 357, 360, 532, 658, 663, 819
FspBI CTAG 1 cut(s) 197
GlaI GCGC 7 cut(s) 208, 342, 367, 393, 418, 480, 661
GluI GCNGC 9 cut(s) 78, 147, 325, 357, 360, 532, 658, 663, 819
HaeII RGCGCY 2 cut(s) 420, 482
HaeIII GGCC 8 cut(s) 86, 170, 234, 267, 288, 534, 617, 721
HapII CCGG 7 cut(s) 105, 285, 395, 402, 447, 618, 812
HgaI GACGC 3 cut(s) 55, 292, 398
HhaI GCGC 7 cut(s) 209, 343, 368, 394, 419, 481, 662
Hin1I GRCGYC 4 cut(s) 66, 213, 417, 479
Hin1II CATG 5 cut(s) 73, 85, 229, 319, 745
Hin6I GCGC 7 cut(s) 207, 341, 366, 392, 417, 479, 660
HinP1I GCGC 7 cut(s) 207, 341, 366, 392, 417, 479, 660
HincII GTYRAC 2 cut(s) 313, 388
HindII GTYRAC 2 cut(s) 313, 388
HindIII AAGCTT 2 cut(s) 431, 869
HinfI GANTC 2 cut(s) 7, 182
HpaII CCGG 7 cut(s) 105, 285, 395, 402, 447, 618, 812
HphI GGTGA 8 cut(s) 109, 214, 298, 419, 478, 661, 757, 797
Hpy166II GTNNAC 3 cut(s) 124, 313, 388
Hpy188I TCNGA 2 cut(s) 244, 251
Hpy8I GTNNAC 3 cut(s) 124, 313, 388
Hpy99I CGWCG 5 cut(s) 215, 218, 314, 389, 392
HpyAV CCTTC 8 cut(s) 147, 287, 419, 496, 587, 742, 776, 790
HpyCH4III ACNGT 2 cut(s) 121, 310
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 821, 828
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 83, 176, 206, 365, 443, 614, 877
HpyF3I CTNAG 2 cut(s) 100, 735
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 4 cut(s) 66, 213, 417, 479
Hsp92II CATG 5 cut(s) 73, 85, 229, 319, 745
HspAI GCGC 7 cut(s) 207, 341, 366, 392, 417, 479, 660
KasI GGCGCC 2 cut(s) 416, 478
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 251, 558
LmnI GCTCC 2 cut(s) 154, 610
Lsp1109I GCAGC 2 cut(s) 336, 805
LweI GCATC 2 cut(s) 69, 445
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 304, 407, 505, 551
MalI GATC 2 cut(s) 253, 560
MbiI CCGCTC 2 cut(s) 149, 613
MboI GATC 2 cut(s) 251, 558
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 546, 574
Mly113I GGCGCC 2 cut(s) 417, 479
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 603
MroNI GCCGGC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 7 cut(s) 105, 285, 395, 402, 447, 618, 812
MspR9I CCNGG 5 cut(s) 164, 421, 619, 723, 813
MvaI CCWGG 3 cut(s) 164, 421, 723
MvnI CGCG 6 cut(s) 207, 341, 343, 366, 392, 662
MwoI GCNNNNNNNGC 8 cut(s) 57, 83, 176, 206, 365, 443, 614, 877
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 2 cut(s) 417, 479
NciI CCSGG 2 cut(s) 619, 813
NcoI CCATGG 2 cut(s) 81, 225
NdeII GATC 2 cut(s) 251, 558
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 73, 85, 229, 319, 745
NlaIV GGNNCC 6 cut(s) 76, 169, 170, 418, 480, 519
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 304, 407
OliI CACNNNNGTG 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 163
PceI AGGCCT 1 cut(s) 721
PdiI GCCGGC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 9 cut(s) 79, 148, 326, 358, 361, 533, 659, 664, 820
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 2 cut(s) 420, 482
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 162, 419, 721
PspEI GGTNACC 1 cut(s) 551
PspGI CCWGG 3 cut(s) 162, 419, 721
PspN4I GGNNCC 6 cut(s) 76, 169, 170, 418, 480, 519
PspOMI GGGCCC 1 cut(s) 168
PspPI GGNCC 7 cut(s) 168, 169, 232, 266, 381, 518, 615
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 2 cut(s) 740, 877
RsaNI GTAC 2 cut(s) 739, 876
RseI CAYNNNNRTG 1 cut(s) 227
SalI GTCGAC 2 cut(s) 311, 386
SatI GCNGC 9 cut(s) 78, 147, 325, 357, 360, 532, 658, 663, 819
Sau3AI GATC 2 cut(s) 251, 558
Sau96I GGNCC 7 cut(s) 168, 169, 232, 266, 381, 518, 615
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 5 cut(s) 164, 421, 619, 723, 813
SduI GDGCHC 1 cut(s) 172
SetI ASST 8 cut(s) 177, 216, 435, 507, 787, 801, 873, 886
SfaNI GCATC 2 cut(s) 69, 445
SfcI CTRYAG 1 cut(s) 897
SfoI GGCGCC 2 cut(s) 418, 480
SgrAI CRCCGGYG 2 cut(s) 394, 446
SgrDI CGTCGACG 1 cut(s) 386
SinI GGWCC 2 cut(s) 381, 518
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 2 cut(s) 546, 574
SseBI AGGCCT 1 cut(s) 721
SspDI GGCGCC 2 cut(s) 416, 478
SspMI CTAG 1 cut(s) 197
StuI AGGCCT 1 cut(s) 721
StyD4I CCNGG 5 cut(s) 162, 419, 617, 721, 811
StyI CCWWGG 3 cut(s) 81, 225, 369
TaaI ACNGT 2 cut(s) 121, 310
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 312, 387
TasI AATT 2 cut(s) 546, 574
TatI WGTACW 1 cut(s) 738
TauI GCSGC 7 cut(s) 80, 149, 359, 362, 534, 660, 665
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 304, 407
TseI GCWGC 2 cut(s) 324, 818
Tsp45I GTSAC 2 cut(s) 304, 407
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 1 cut(s) 898
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 381, 518
XapI RAATTY 1 cut(s) 574
XmiI GTMKAC 3 cut(s) 123, 312, 387
XspI CTAG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.